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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917180
Clone id YMU001_000097_C08
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTGCTTTACCTCATGCGGCCAACCACATCGAACATTTCAGTATTTGAAAACTAGTTATTA
ATAGTTCGCCCGCTAGAATAACCCCCTTCGAGTCTCTGTACCTATCCCGCTTTTGTAGCG
ATCTGATCATTACTCCACAACGTGGAACGGGACTTGGCTCAGGATTGCCTGCTGAATAAT
CCCAGGTTTCCCTGAATCTGGGAGTTGCCACTTGATACGTTTCCATACCTAGGCTCAATC
CGATTAAGTCCGCTGCGTCTACTATTTCGCCATATCCCCACCTTTAGGCCCCAAGGAACC
GCGAAGGAAAATACCTAGATATTTCCTCATTATCGAAAGTTCAAAGTAATTTTGGTGCAC
TTTCCTTTTATTTGTCAACTTGCTTCCATTCTATCCAGGTGAAAAGTCATCAAGTGGGAA
AGATTAGCACATATGTACAAATATGCGCATGTCTAATCTAAACATTCTACTTTTTTCGCT
TCTGTTCTACAGCGCTCTTTCCCAACCTTGCCTCCCGTTCGCTAAGAATGGGAATACGCA
CGAGAAACTCTGTCTA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917180|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_C08.
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q7X9D8
Definition tr|Q7X9D8|Q7X9D8_MARQU ABRH15 (Fragment) OS=Marsilea quadrifolia
Align length 50
Score (bit) 62.4
E-value 6.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917180|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_C08.
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7X9D8|Q7X9D8_MARQU ABRH15 (Fragment) OS=Marsilea quadrifolia...    62   6e-11
tr|A9USW9|A9USW9_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.0  

>tr|Q7X9D8|Q7X9D8_MARQU ABRH15 (Fragment) OS=Marsilea quadrifolia
           PE=2 SV=1
          Length = 92

 Score = 62.4 bits (150), Expect(2) = 6e-11
 Identities = 33/50 (66%), Positives = 35/50 (70%)
 Frame = -1

Query: 292 GA*RWGYGEIVDAADLIGLSLGMETYQVATPRFRETWDYSAGNPEPSPVP 143
           G  R GYG +VDAADLI LSL MET QV   RFR T DY AGNPEP+  P
Sbjct: 1   GPTRGGYGGMVDAADLIRLSLSMETDQVTALRFRGTQDYFAGNPEPNLAP 50



 Score = 27.7 bits (60), Expect(2) = 6e-11
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 120 RYKSGIGTETRRGLF*R 70
           R +SGIGTETRR LF R
Sbjct: 56  RLRSGIGTETRRELFQR 72


>tr|A9USW9|A9USW9_MONBE Predicted protein OS=Monosiga brevicollis
           GN=31392 PE=4 SV=1
          Length = 504

 Score = 33.9 bits (76), Expect = 6.0
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = -3

Query: 278 GIWRNSRRSGLNRIEPRYGNVSSGN--SQIQGNLGLFSRQS*AKSRSTLWSNDQIA 117
           G W+N R+SG  R+E   G V  G      +  LG  SR + A  R   WSND+++
Sbjct: 273 GSWKNDRKSGFGRMEFANGAVYEGQWVGNRRNGLGRLSRGTLA--RCGKWSNDELS 326