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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917182
Clone id YMU001_000097_C10
Library
Length 525
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_C10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGATACAGAAGCGCGCGGCATTGTTGCTCATTGACAATCATAAACAAAAACACTTGAGA
ACCATAATGAAAACCCTGTAGCAGTACATAAATAGAGGTGTTCTGCTTCATAAATAGAGG
TGCTGCTCATTGCAGCCATAAAGCAAACCACATGACAAAAACTGACAACCATGTATAACA
TGACTCAATCCGCAGACTCCGAATCATCATCAAGCCCTGAGTACGAGCAAGGACGCACAC
GTAAAGACACAGTGGAACGCGATTGCAAGACCTCACCTGCACAAAAGTAAACATGTCGTT
TATATCAATTATTCTGCAATGATATGTGTAGAGCTCAAAGTAAAAGGAGAATGTACTATG
GTGATGTGTACATAAACTTACTGATTTGGCTTCTTAGAGATAAGTTTCGCGATCTCTAAG
AAGATTTGGTGACGCTTCGTCTCTTCCTCCTCTCTGATCCTTGCGAATCTCTCCGCATGT
AGCATCCTGGCAGTCTCAAGCTCTTGCAAGGTGCTTGTCTTCTTA
■■Homology search results ■■ -
sp_hit_id Q4VNC1
Definition sp|Q4VNC1|AT134_HUMAN Probable cation-transporting ATPase 13A4 OS=Homo sapiens
Align length 24
Score (bit) 30.8
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917182|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_C10.
         (525 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4VNC1|AT134_HUMAN Probable cation-transporting ATPase 13A4 O...    31   4.1  
sp|P08649|CO4_RAT Complement C4 OS=Rattus norvegicus GN=C4 PE=1 ...    31   4.1  

>sp|Q4VNC1|AT134_HUMAN Probable cation-transporting ATPase 13A4
           OS=Homo sapiens GN=ATP13A4 PE=2 SV=2
          Length = 1196

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 304 YKRHVYFCAGEVLQSRSTVSLRVR 233
           YKRHV FC  EV+Q+++  S  VR
Sbjct: 342 YKRHVLFCGTEVIQAKAACSGTVR 365


>sp|P08649|CO4_RAT Complement C4 OS=Rattus norvegicus GN=C4 PE=1
           SV=3
          Length = 1737

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 384 SVSLCTHHHSTFSFYFELYTYHCRIIDINDMFTFVQVRSC 265
           S+S+   HH   SFYF  Y YH  +   N +   VQ   C
Sbjct: 526 SISVLVDHHLAPSFYFVAYFYHQGLPVANSLLINVQPGDC 565
tr_hit_id B4P501
Definition tr|B4P501|B4P501_DROYA GE13429 OS=Drosophila yakuba
Align length 59
Score (bit) 33.9
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917182|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_C10.
         (525 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4P501|B4P501_DROYA GE13429 OS=Drosophila yakuba GN=GE13429 P...    34   5.2  
tr|Q2PRF1|Q2PRF1_DANRE Odorant receptor (Fragment) OS=Danio reri...    33   8.6  
tr|B0S2I2|B0S2I2_FINM2 Formate dehydrogenase alpha subunit OS=Fi...    33   8.8  

>tr|B4P501|B4P501_DROYA GE13429 OS=Drosophila yakuba GN=GE13429 PE=4
           SV=1
          Length = 1843

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -1

Query: 342 YFELYTYHCRIIDINDMFTFVQVRSCNRVPLCLYVCV---LARTQGLMMIRSLRIESCY 175
           YFE+ ++ C   DI D+F   +  +CN+  L L VCV   L    GL+++R + + + Y
Sbjct: 733 YFEILSFIC---DILDLFNTSKESNCNQRELLLKVCVYSLLNLDNGLILLRFVGVGNAY 788


>tr|Q2PRF1|Q2PRF1_DANRE Odorant receptor (Fragment) OS=Danio rerio
           GN=or126-7 PE=4 SV=1
          Length = 309

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
 Frame = -3

Query: 268 LQSRSTVSLRVRPCSYSGLDDDSES-----AD*VMLYMVVSFCHVVCFMAAMSSTSIYEA 104
           L++ S+VS+     + SGLD+  E+     +  V+ Y ++ FC+V   +A +S   ++E 
Sbjct: 1   LENESSVSV----FTLSGLDETMENRYVLFSLTVLFYPLMVFCNVTVIVAIISHKKLHEP 56

Query: 103 EHLYLCTATGFSLW----FSSVFVYD 38
            ++++C     +L+    F   F+YD
Sbjct: 57  MYVFICNLCANALFGTAGFYPKFLYD 82


>tr|B0S2I2|B0S2I2_FINM2 Formate dehydrogenase alpha subunit
           OS=Finegoldia magna (strain ATCC 29328) GN=FMG_1154 PE=4
           SV=1
          Length = 308

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -1

Query: 441 DEASPNLLRDRETYL*EAKSVSLCTHHHSTFSFYFELYTYHCRI-IDINDMFTFVQVRSC 265
           D++SP ++RD    +   K V  C          F    Y  RI +DIND F      SC
Sbjct: 133 DDSSPYIIRDDSKCILCGKCVRTCNVMDDRKILNFSNRGYETRINLDINDTFESSYCISC 192

Query: 264 NRVPLCLYVCVLARTQGLMM 205
           NR       CV+A   G +M
Sbjct: 193 NR-------CVVACPVGALM 205