| BP917193 |
| Clone id |
YMU001_000097_D12 |
| Library |
YMU01 |
| Length |
486 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000097_D12. |
| Accession |
BP917193 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL1805Contig1 |
| Sequence |
TGCTGCACACACTTTATGCATACCATTGACCTTGAATTTGGGCAAACCTTTTACGATCTG
TTTTGATTGCATGCTGCGCAATCTCTGCTCATTAACATGGCCAATGCGTTTGTGTCAAAT
GTCCACATCAGCCACAACACCTGTGCCTTGTGCAAATAATGTAGCTTTTACCTCAGGCAT
GTCTACATTCAGCGTAAACATTCTGCCCACACATTTGCCCTCTCTGATCAGCTTACAGCC
ATTCTGGAAATCTTCTACATAACAGCTATTTGGATTGAAGCAAACCTGCAAACCTTGCTC
AACCATTTGTCCAACAGAAACAAGATTCTTTGTAATGTTTGGGACATGAAGTACATCTGC
TAAGTACTTTGATTTCCCACTCTTCGTATTTAGAGGTATGTCCCCTACATGAGCAATGGG
GTGAGCTGTGTCATCTCCTGTCTGCACATAGCCTGACACATCTGGTTTGCACATATCTCT
AAACCA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P10978 |
| Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
| Align length |
134 |
| Score (bit) |
53.5 |
| E-value |
5.0e-07 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917193|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_D12.
(486 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 54 5e-07
sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein OS=... 38 0.028
sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=S... 38 0.028
sp|Q12501|YO22B_YEAST Transposon Ty2-OR2 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein OS=... 38 0.028
sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein OS=S... 38 0.028
sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=S... 38 0.028
sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=... 38 0.028
sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=... 38 0.028
sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=... 38 0.028
sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=... 38 0.028
sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=... 38 0.028
sp|P0C2J5|YL22B_YEAST Transposon Ty2-LR2 Gag-Pol polyprotein OS=... 38 0.028
sp|P0C2J3|YL21B_YEAST Transposon Ty2-LR1 Gag-Pol polyprotein OS=... 38 0.028
sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=... 38 0.028
sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=... 38 0.028
sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Sa... 38 0.028
sp|Q12337|YG21B_YEAST Transposon Ty2-GR1 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12503|YF21B_YEAST Transposon Ty2-F/Ty2-GR2 Gag-Pol polyprote... 38 0.028
sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=... 38 0.028
sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=... 38 0.028
sp|Q07791|YD23B_YEAST Transposon Ty2-DR3 Gag-Pol polyprotein OS=... 38 0.028
sp|Q03494|YD22B_YEAST Transposon Ty2-DR2 Gag-Pol polyprotein OS=... 38 0.028
sp|Q12472|YD21B_YEAST Transposon Ty2-DR1 Gag-Pol polyprotein OS=... 38 0.028
sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=... 38 0.028
>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328
Score = 53.5 bits (127), Expect = 5e-07
Identities = 38/134 (28%), Positives = 67/134 (50%)
Frame = -1
Query: 453 GYVQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFN 274
G V+ G+ + IA +GDI + T G + L DV HVP++ NL+S + G + F
Sbjct: 320 GTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFA 379
Query: 273 PNSCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADVDI*HKRIGHV 94
+ G +I +G G ++ N ++ + + AQ VD+ HKR+GH+
Sbjct: 380 NQKWRL---TKGSLVIAKGVARGTLYRTNAEICQGELNA-AQDE---ISVDLWHKRMGHM 432
Query: 93 NEQRLRSMQSKQIV 52
+E+ L+ + K ++
Sbjct: 433 SEKGLQILAKKSLI 446
>sp|P0C2J0|YP13B_YEAST Transposon Ty1-PR2 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-PR2 PE=1 SV=1
Length = 1756
Score = 37.7 bits (86), Expect = 0.028
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +GD+ + + +K VLH PNI +L+S+ ++ + CF N D
Sbjct: 495 PINAIGDLQFHFQDN-TKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTV 553
Query: 240 GCKLIREGK--CVGRMFTL--NVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLR 76
+++ G V + + L N+ +P + ++ T I H+ + H N Q +R
Sbjct: 554 LAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAHANAQTIR 611
>sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-PR1 PE=3 SV=1
Length = 1755
Score = 37.7 bits (86), Expect = 0.028
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +GD+ + + +K VLH PNI +L+S+ ++ + CF N D
Sbjct: 495 PINAIGDLQFHFQDN-TKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTV 553
Query: 240 GCKLIREGK--CVGRMFTL--NVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLR 76
+++ G V + + L N+ +P + ++ T I H+ + H N Q +R
Sbjct: 554 LAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAHANAQTIR 611
>sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-PL PE=2 SV=1
Length = 1755
Score = 37.7 bits (86), Expect = 0.028
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +GD+ + + +K VLH PNI +L+S+ ++ + CF N D
Sbjct: 495 PINAIGDLQFHFQDN-TKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTV 553
Query: 240 GCKLIREGK--CVGRMFTL--NVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLR 76
+++ G V + + L N+ +P + ++ T I H+ + H N Q +R
Sbjct: 554 LAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAHANAQTIR 611
>sp|Q12501|YO22B_YEAST Transposon Ty2-OR2 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY2B-OR2 PE=3 SV=1
Length = 1770
Score = 37.7 bits (86), Expect = 0.028
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +G++ N ++G +K LH PNI +L+S+ ++ Q + CF N+ D
Sbjct: 491 PINAIGNLHFNFQNG-TKTSIKALHTPNIAYDLLSLSELTNQNITACFTRNTLERSDGTV 549
Query: 240 GCKLIREG 217
+++ G
Sbjct: 550 LAPIVKHG 557
>sp|Q12113|YO21B_YEAST Transposon Ty2-OR1 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY2B-OR1 PE=3 SV=1
Length = 1770
Score = 37.7 bits (86), Expect = 0.028
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +G++ N ++G +K LH PNI +L+S+ ++ Q + CF N+ D
Sbjct: 491 PINAIGNLHFNFQNG-TKTSIKALHTPNIAYDLLSLSELANQNITACFTRNTLERSDGTV 549
Query: 240 GCKLIREG 217
+++ G
Sbjct: 550 LAPIVKHG 557
>sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-OR PE=1 SV=1
Length = 1755
Score = 37.7 bits (86), Expect = 0.028
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +GD+ + + +K VLH PNI +L+S+ ++ + CF N D
Sbjct: 495 PINAIGDLQFHFQDN-TKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTV 553
Query: 240 GCKLIREGK--CVGRMFTL--NVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLR 76
+++ G V + + L N+ +P + ++ T I H+ + H N Q +R
Sbjct: 554 LAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAHANAQTIR 611
>sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-OL PE=3 SV=1
Length = 1755
Score = 37.7 bits (86), Expect = 0.028
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +GD+ + + +K VLH PNI +L+S+ ++ + CF N D
Sbjct: 495 PINAIGDLQFHFQDN-TKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTV 553
Query: 240 GCKLIREGK--CVGRMFTL--NVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLR 76
+++ G V + + L N+ +P + ++ T I H+ + H N Q +R
Sbjct: 554 LAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAHANAQTIR 611
>sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-NL2 PE=1 SV=1
Length = 1749
Score = 37.7 bits (86), Expect = 0.028
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +GD+ + + +K VLH PNI +L+S+ ++ + CF N D
Sbjct: 495 PINAIGDLQFHFQDN-TKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTV 553
Query: 240 GCKLIREGK--CVGRMFTL--NVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLR 76
+++ G V + + L N+ +P + ++ T I H+ + H N Q +R
Sbjct: 554 LAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAHANAQTIR 611
>sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein
OS=Saccharomyces cerevisiae GN=TY1B-NL1 PE=3 SV=1
Length = 1755
Score = 37.7 bits (86), Expect = 0.028
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Frame = -1
Query: 420 PIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQN 241
PI +GD+ + + +K VLH PNI +L+S+ ++ + CF N D
Sbjct: 495 PINAIGDLQFHFQDN-TKTSIKVLHTPNIAYDLLSLNELAAVDITACFTKNVLERSDGTV 553
Query: 240 GCKLIREGK--CVGRMFTL--NVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLR 76
+++ G V + + L N+ +P + ++ T I H+ + H N Q +R
Sbjct: 554 LAPIVKYGDFYWVSKKYLLPSNISVPTINNVHTSESTRKYPYPFI-HRMLAHANAQTIR 611
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A5AWN8 |
| Definition |
tr|A5AWN8|A5AWN8_VITVI Putative uncharacterized protein OS=Vitis vinifera |
| Align length |
161 |
| Score (bit) |
79.3 |
| E-value |
9.0e-14 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917193|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_D12.
(486 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A5AWN8|A5AWN8_VITVI Putative uncharacterized protein OS=Vitis... 79 9e-14
tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical O... 78 3e-13
tr|Q9ZUF2|Q9ZUF2_ARATH Putative retroelement pol polyprotein OS=... 76 7e-13
tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=A... 76 1e-12
tr|Q9ZQE9|Q9ZQE9_ARATH Putative retroelement pol polyprotein OS=... 75 2e-12
tr|B6REL8|B6REL8_9BRAS Integrase OS=Boechera divaricarpa GN=TnIn... 75 2e-12
tr|Q9LPK1|Q9LPK1_ARATH F6N18.1 OS=Arabidopsis thaliana PE=4 SV=2 74 3e-12
tr|Q9FH39|Q9FH39_ARATH Copia-type polyprotein (Polyprotein) OS=A... 74 3e-12
tr|Q9C7Y1|Q9C7Y1_ARATH Copia-type polyprotein, putative; 28768-3... 74 3e-12
tr|A5C216|A5C216_VITVI Putative uncharacterized protein (Fragmen... 74 4e-12
tr|A5BQ49|A5BQ49_VITVI Putative uncharacterized protein OS=Vitis... 73 8e-12
tr|Q572I3|Q572I3_PHYIN Putative polyprotein OS=Phytophthora infe... 72 1e-11
tr|A5BNA8|A5BNA8_VITVI Putative uncharacterized protein OS=Vitis... 72 1e-11
tr|A5AL21|A5AL21_VITVI Putative uncharacterized protein OS=Vitis... 72 2e-11
tr|Q9SHL9|Q9SHL9_ARATH Putative retroelement pol polyprotein OS=... 71 2e-11
tr|A5BT67|A5BT67_VITVI Putative uncharacterized protein OS=Vitis... 71 2e-11
tr|A5AWP3|A5AWP3_VITVI Putative uncharacterized protein OS=Vitis... 71 2e-11
tr|A5BPR9|A5BPR9_VITVI Putative uncharacterized protein OS=Vitis... 70 4e-11
tr|A5BC25|A5BC25_VITVI Putative uncharacterized protein OS=Vitis... 70 7e-11
tr|A5ADA3|A5ADA3_VITVI Putative uncharacterized protein OS=Vitis... 69 9e-11
tr|A5BT63|A5BT63_VITVI Putative uncharacterized protein OS=Vitis... 69 1e-10
tr|A5BBA3|A5BBA3_VITVI Putative uncharacterized protein OS=Vitis... 69 2e-10
tr|Q9ZPU5|Q9ZPU5_ARATH Putative retroelement pol polyprotein OS=... 68 2e-10
tr|A5BFG0|A5BFG0_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A5B9M8|A5B9M8_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A5AFP3|A5AFP3_VITVI Putative uncharacterized protein OS=Vitis... 68 2e-10
tr|A7QRB7|A7QRB7_VITVI Chromosome chr13 scaffold_149, whole geno... 68 3e-10
tr|A5C3F9|A5C3F9_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
tr|A5BWV9|A5BWV9_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
tr|A5BT74|A5BT74_VITVI Putative uncharacterized protein OS=Vitis... 68 3e-10
>tr|A5AWN8|A5AWN8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_041092 PE=4 SV=1
Length = 1014
Score = 79.3 bits (194), Expect = 9e-14
Identities = 54/161 (33%), Positives = 90/161 (55%)
Frame = -1
Query: 483 FRDMCKPDVSGYVQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQM 304
FR++ + +S V+ G+ P+ G + + + +G K+++DVL VPNI +NL+SVGQ+
Sbjct: 218 FREIDRTAISK-VRIGNGEYIPVKGKGTVAIESLTGL-KFISDVLFVPNIDQNLLSVGQL 275
Query: 303 VEQGLQVCFNPNSCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADV 124
VE+G +VCF +C ++D + + + K G+ F LN M E + AQ +
Sbjct: 276 VEKGFKVCFEDRNCIIKDAEG--RKVFNIKMKGKSFALN--MLEDEQIAAAQHEN---NT 328
Query: 123 DI*HKRIGHVNEQRLRSMQSKQIVKGLPKFKVNGMHKVCAA 1
+ HKR+GH + + M+ QIV+GLP + +CAA
Sbjct: 329 MLWHKRLGHFHHNVMLYMKKNQIVEGLPDLEEE--LPICAA 367
>tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical
OS=Solanum demissum GN=SDM1_42t00010 PE=4 SV=1
Length = 1333
Score = 77.8 bits (190), Expect = 3e-13
Identities = 48/151 (31%), Positives = 77/151 (50%)
Frame = -1
Query: 483 FRDMCKPDVSGYVQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQM 304
FRD+ + S V+ GDD I G + + T G K+L DV +VP + NL+SVGQ+
Sbjct: 328 FRDLDESQKSE-VRLGDDKQVHIEGKGTVEIKTVQGNVKFLYDVQYVPTLAHNLLSVGQL 386
Query: 303 VEQGLQVCFNPNSCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADV 124
+ G V F N+C ++D ++G + R +MF L++ A + + +
Sbjct: 387 MTSGYSVVFYDNACDIKDKESGRTIARVPMTQNKMFPLDISNVGNSALVVKEKN----ET 442
Query: 123 DI*HKRIGHVNEQRLRSMQSKQIVKGLPKFK 31
++ H R GH+N L+ + K +V GLP K
Sbjct: 443 NLWHLRYGHLNVNWLKLLVQKDMVIGLPNIK 473
>tr|Q9ZUF2|Q9ZUF2_ARATH Putative retroelement pol polyprotein
OS=Arabidopsis thaliana GN=At2g05960 PE=2 SV=1
Length = 1200
Score = 76.3 bits (186), Expect = 7e-13
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Frame = -1
Query: 486 WFRDMCKPD--VSGYVQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSV 313
WF CK D V+G V+ GDD+ I G I TK+G+ K LA+V ++P++ N++S+
Sbjct: 273 WF---CKLDEMVTGKVKFGDDSRIDIRGKGSILFLTKNGEPKTLANVYYIPDLKSNIISL 329
Query: 312 GQMVEQGLQVCFNPNSCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVV 133
GQ E G V N + D ++G L++ + R++ + + + K A +
Sbjct: 330 GQATEAGCDVRLKDNYLTLHD-RDGNLLVKATRSRNRLYRVELKVKNTKCLQLA----AL 384
Query: 132 ADVDI*HKRIGHVNEQRLRSMQSKQIVKGLP 40
D+ H R+GH+N + +++M +K+ V G+P
Sbjct: 385 NDLTKWHARLGHINLETIKAMVTKEFVIGIP 415
>tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element
OS=Arabidopsis thaliana PE=4 SV=1
Length = 1499
Score = 75.9 bits (185), Expect = 1e-12
Identities = 46/135 (34%), Positives = 74/135 (54%)
Frame = -1
Query: 405 GDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQNGCKLI 226
GDI ++T G + DVL+VP + +NL+SV QM+ G +V F N C ++D + + I
Sbjct: 366 GDIRVSTNKG-DHVIKDVLYVPELARNLLSVSQMISNGYRVIFEDNKCVIQDLKG--RKI 422
Query: 225 REGKCVGRMFTLNVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLRSMQSKQIVKG 46
+ K R F + + + + D+ HKR GHVN ++ +MQ+ +IV+
Sbjct: 423 LDIKMKDRSFP--IIWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEK 480
Query: 45 LPKFKVNGMHKVCAA 1
LPKF+V + +CAA
Sbjct: 481 LPKFEV--IKGICAA 493
>tr|Q9ZQE9|Q9ZQE9_ARATH Putative retroelement pol polyprotein
OS=Arabidopsis thaliana GN=At2g15650 PE=2 SV=1
Length = 1347
Score = 75.1 bits (183), Expect = 2e-12
Identities = 47/126 (37%), Positives = 71/126 (56%)
Frame = -1
Query: 405 GDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPNSCYVEDFQNGCKLI 226
GDI + T+ GK + + +V VP + KNL+SV Q++ G V F C ++D NG K I
Sbjct: 368 GDITVMTRHGK-RIIKNVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQD-ANG-KEI 424
Query: 225 REGKCVGRMFTLNVDMPEVKATLFAQGTGVVADVDI*HKRIGHVNEQRLRSMQSKQIVKG 46
+ + F + + E +A T V + HKR+GHV+ +RL+ MQ K++V G
Sbjct: 425 MNIEMTDKSFKIKLSSVEEEAM-----TANVQTEETWHKRLGHVSNKRLQQMQDKELVNG 479
Query: 45 LPKFKV 28
LP+FKV
Sbjct: 480 LPRFKV 485
>tr|B6REL8|B6REL8_9BRAS Integrase OS=Boechera divaricarpa GN=TnInt1
PE=4 SV=1
Length = 1165
Score = 74.7 bits (182), Expect = 2e-12
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Frame = -1
Query: 447 VQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPN 268
V+ G+D + G + ++ G K + V ++P++ NL+SVGQMVE V F+ N
Sbjct: 175 VKLGNDKEVQVEGRGVVAVHNGHGNLKLIYGVYYIPDLAHNLLSVGQMVENNCSVLFDGN 234
Query: 267 SCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADVD-I*HKRIGHVN 91
C +++ ++G L K ++ L + E KA + V+D+ + H R GH++
Sbjct: 235 ECVIKEKKSGVTLAMVKKTSNNLYPLEMSSVETKALV-----AKVSDISKLLHLRYGHLH 289
Query: 90 EQRLRSMQSKQIVKGLPKFKVNGMHKVC 7
E LR + K +V GLPK G K+C
Sbjct: 290 ENGLRVLNQKDMVIGLPKI---GALKLC 314
>tr|Q9LPK1|Q9LPK1_ARATH F6N18.1 OS=Arabidopsis thaliana PE=4 SV=2
Length = 1207
Score = 74.3 bits (181), Expect = 3e-12
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Frame = -1
Query: 447 VQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPN 268
V+ GDD + G + L G+ + ++DV VP + NL SVGQ+ ++GL+ +
Sbjct: 230 VRLGDDRRMAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGD 288
Query: 267 SCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADVD-I*HKRIGHVN 91
C V ++ RMF + + + K T + V+ + + HKR GH+N
Sbjct: 289 VCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLN 348
Query: 90 EQRLRSMQSKQIVKGLPKFKVNGMHKVC 7
Q LRS+ K++VKGLPKF + VC
Sbjct: 349 HQGLRSLAEKEMVKGLPKFDLGEEEAVC 376
>tr|Q9FH39|Q9FH39_ARATH Copia-type polyprotein (Polyprotein)
OS=Arabidopsis thaliana PE=4 SV=1
Length = 1334
Score = 74.3 bits (181), Expect = 3e-12
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Frame = -1
Query: 447 VQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPN 268
V+ GDD + G + L G+ + ++DV VP + NL SVGQ+ ++GL+ +
Sbjct: 325 VRLGDDRRMAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGD 383
Query: 267 SCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADVD-I*HKRIGHVN 91
C V ++ RMF + + + K T + V+ + + HKR GH+N
Sbjct: 384 VCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLN 443
Query: 90 EQRLRSMQSKQIVKGLPKFKVNGMHKVC 7
Q LRS+ K++VKGLPKF + VC
Sbjct: 444 HQGLRSLAEKEMVKGLPKFDLGEEEAVC 471
>tr|Q9C7Y1|Q9C7Y1_ARATH Copia-type polyprotein, putative;
28768-32772 OS=Arabidopsis thaliana GN=T9G5.7 PE=4 SV=1
Length = 1334
Score = 74.3 bits (181), Expect = 3e-12
Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 1/148 (0%)
Frame = -1
Query: 447 VQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQMVEQGLQVCFNPN 268
V+ GDD + G + L G+ + ++DV VP + NL SVGQ+ ++GL+ +
Sbjct: 325 VRLGDDRRMAVEGKGKLRLEV-DGRIQVISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGD 383
Query: 267 SCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADVD-I*HKRIGHVN 91
C V ++ RMF + + + K T + V+ + + HKR GH+N
Sbjct: 384 VCEVWHKTEKRMVMHSTMTKNRMFVVFAAVKKSKETEETRCLQVIGKANNMWHKRFGHLN 443
Query: 90 EQRLRSMQSKQIVKGLPKFKVNGMHKVC 7
Q LRS+ K++VKGLPKF + VC
Sbjct: 444 HQGLRSLAEKEMVKGLPKFDLGEEEAVC 471
>tr|A5C216|A5C216_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_027476 PE=4 SV=1
Length = 515
Score = 73.9 bits (180), Expect = 4e-12
Identities = 53/161 (32%), Positives = 88/161 (54%)
Frame = -1
Query: 483 FRDMCKPDVSGYVQTGDDTAHPIAHVGDIPLNTKSGKSKYLADVLHVPNITKNLVSVGQM 304
FR++ + +S V+ G+ P+ G + + + G K ++DVL VP+I +NL+SVGQ+
Sbjct: 313 FREIDRTAISK-VRIGNGEYIPVKGKGTVAIESLIGL-KLISDVLFVPDIDQNLLSVGQL 370
Query: 303 VEQGLQVCFNPNSCYVEDFQNGCKLIREGKCVGRMFTLNVDMPEVKATLFAQGTGVVADV 124
VE+G +VCF +C ++D + + + K G+ F LN M E + AQ +
Sbjct: 371 VEKGFKVCFEDKNCIIKDAEG--REVFNIKMKGKSFALN--MLEDEQIAAAQHEN---NT 423
Query: 123 DI*HKRIGHVNEQRLRSMQSKQIVKGLPKFKVNGMHKVCAA 1
+ HKR+GH + + M+ QIV+GLP + +CAA
Sbjct: 424 MLWHKRLGHFHHNVVLYMKKNQIVEGLPDLEEE--LPICAA 462
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