BP917197 |
Clone id |
YMU001_000097_E05 |
Library |
YMU01 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000097_E05. |
Accession |
BP917197 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2854Contig1 |
Sequence |
GGGTAGACTCAGTCTACACAAAAATTTCAGACTCCTTTACATAATGCACATTGAATAACT GTACTTCAGACTCACTTTTGACCTGGTACAAATGCAGAATGTCATCGCTGTAATTTCTGT TTTTCGCTAGGGGACGGTCGCACAGCTTTAGCTTTCCCTTGCTTCCCATTACAGAGCATG TCGATCGTCGTCGTCGTCGTCTTCATCCTCATCAAACTTCCTCTTATCCTTTCCCTTCTT TGCAGCAGCATGATCTGGAACTGTAAAGATGGTGACCTTTCTCTTGATCTCTTCTTCCGC TTCCAATCCTTTATCGTCATCTTCCATTTCATCCGTTTGGTCTCCAGATATATAAAGATC CTGAGCTACCAGAAGCAAGTACATCTAATCGAGGATGCAGCTTGTTTACTGGAGTGATGG TCGTAATGTTTTTGTCCACAACCTCAGCTACAAGCTGCCCTGTGCTTACGTCAATAAAGT CAATCGGATGCAAAGCAATCCCATTGAAATCATCACTTATGTAACGACCAATAACTGCTA AATTTTCACTTGGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6NQ88 |
Definition |
sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana |
Align length |
71 |
Score (bit) |
119.0 |
E-value |
1.0e-26 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A5BX89 |
Definition |
tr|A5BX89|A5BX89_VITVI Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis vinifera |
Align length |
72 |
Score (bit) |
122.0 |
E-value |
1.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917197|Adiantum capillus-veneris mRNA, clone: YMU001_000097_E05. (555 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5BX89|A5BX89_VITVI Putative uncharacterized protein (Chromos... 122 1e-26 tr|Q9FU94|Q9FU94_ORYSJ cDNA clone:002-108-A04, full insert seque... 114 5e-24 tr|Q84KJ3|Q84KJ3_ORYSJ UV-damaged DNA binding protein 2 (Os01g01... 114 5e-24 tr|B8AD68|B8AD68_ORYSI Putative uncharacterized protein OS=Oryza... 114 5e-24 tr|A2ZP40|A2ZP40_ORYSJ Putative uncharacterized protein OS=Oryza... 114 5e-24 tr|A9SST7|A9SST7_PHYPA Predicted protein OS=Physcomitrella paten... 112 1e-23 tr|A8HTF1|A8HTF1_CHLRE UV-damaged DNA binding complex subunit 2 ... 75 3e-12 tr|Q4SUG1|Q4SUG1_TETNG Chromosome undetermined SCAF13949, whole ... 44 0.008 tr|B2R875|B2R875_HUMAN cDNA, FLJ93771, Homo sapiens damage-speci... 44 0.008 tr|Q4FZK4|Q4FZK4_MOUSE Ddb2 protein OS=Mus musculus GN=Ddb2 PE=2... 42 0.022 tr|A2AGR7|A2AGR7_MOUSE Damage specific DNA binding protein 2 OS=... 42 0.022 tr|A2AGR6|A2AGR6_MOUSE Damage specific DNA binding protein 2 OS=... 42 0.022 tr|B6NGN9|B6NGN9_BRAFL Putative uncharacterized protein (Fragmen... 37 0.70 tr|A9V5B9|A9V5B9_MONBE Predicted protein OS=Monosiga brevicollis... 36 1.2
>tr|A5BX89|A5BX89_VITVI Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00024110001 PE=4 SV=1 Length = 559
Score = 122 bits (306), Expect = 1e-26 Identities = 57/72 (79%), Positives = 67/72 (93%) Frame = -3
Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374 P+E+L V+GRYIS+++NG ALHPIDFID+STGQLVAEV+D NITTI+PVNKLHPR DVLA Sbjct: 421 PAESLVVVGRYISENYNGAALHPIDFIDISTGQLVAEVMDPNITTISPVNKLHPRDDVLA 480
Query: 373 SGSSGSLYIWRP 338 SGSS SL+IWRP Sbjct: 481 SGSSRSLFIWRP 492
>tr|Q9FU94|Q9FU94_ORYSJ cDNA clone:002-108-A04, full insert sequence OS=Oryza sativa subsp. japonica GN=P0019D06.8 PE=2 SV=1 Length = 583
Score = 114 bits (284), Expect = 5e-24 Identities = 52/71 (73%), Positives = 66/71 (92%) Frame = -3
Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371 +E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS Sbjct: 444 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 503
Query: 370 GSSGSLYIWRP 338 GSS S++IW+P Sbjct: 504 GSSRSIFIWKP 514
>tr|Q84KJ3|Q84KJ3_ORYSJ UV-damaged DNA binding protein 2 (Os01g0141700 protein) OS=Oryza sativa subsp. japonica GN=UV-DDB2 PE=2 SV=1 Length = 584
Score = 114 bits (284), Expect = 5e-24 Identities = 52/71 (73%), Positives = 66/71 (92%) Frame = -3
Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371 +E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS Sbjct: 445 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 504
Query: 370 GSSGSLYIWRP 338 GSS S++IW+P Sbjct: 505 GSSRSIFIWKP 515
>tr|B8AD68|B8AD68_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00336 PE=4 SV=1 Length = 589
Score = 114 bits (284), Expect = 5e-24 Identities = 52/71 (73%), Positives = 66/71 (92%) Frame = -3
Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371 +E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS Sbjct: 450 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 509
Query: 370 GSSGSLYIWRP 338 GSS S++IW+P Sbjct: 510 GSSRSIFIWKP 520
>tr|A2ZP40|A2ZP40_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_000312 PE=4 SV=1 Length = 607
Score = 114 bits (284), Expect = 5e-24 Identities = 52/71 (73%), Positives = 66/71 (92%) Frame = -3
Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371 +E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS Sbjct: 450 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 509
Query: 370 GSSGSLYIWRP 338 GSS S++IW+P Sbjct: 510 GSSRSIFIWKP 520
>tr|A9SST7|A9SST7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_188047 PE=4 SV=1 Length = 675
Score = 112 bits (280), Expect = 1e-23 Identities = 55/75 (73%), Positives = 62/75 (82%) Frame = -3
Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371 SE L VIGRYISDDFNG+ALHPIDFIDVS G+LV +V D +ITTI VNKLHPRLD +A+ Sbjct: 430 SECLIVIGRYISDDFNGVALHPIDFIDVSNGRLVEQVYDPSITTICTVNKLHPRLDCMAT 489
Query: 370 GSSGSLYIWRPNG*N 326 GSS SL+IWRP N Sbjct: 490 GSSRSLFIWRPRDAN 504
>tr|A8HTF1|A8HTF1_CHLRE UV-damaged DNA binding complex subunit 2 protein OS=Chlamydomonas reinhardtii GN=DDB2 PE=4 SV=1 Length = 187
Score = 74.7 bits (182), Expect = 3e-12 Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 1/67 (1%) Frame = -3
Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPR-LDVL 377 P+E++ V+GRYIS+DF G+ALHP+D + + G L+ ++ D N+TTI+PVNK HPR D Sbjct: 98 PTESVFVVGRYISEDFGGVALHPVDVMSAADGGLLRQLTDTNLTTISPVNKPHPRSFDAD 157
Query: 376 ASGSSGS 356 G +G+ Sbjct: 158 PGGKAGA 164
>tr|Q4SUG1|Q4SUG1_TETNG Chromosome undetermined SCAF13949, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00012482001 PE=4 SV=1 Length = 485
Score = 43.5 bits (101), Expect = 0.008 Identities = 22/73 (30%), Positives = 36/73 (49%) Frame = -3
Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374 P +L V GRY + +D D +T +LV ++ D + I +NK +P DV+ Sbjct: 339 PVYDLIVAGRYPDNRICLSDKRTVDLYDANTAELVCQLQDPTVAGIKSINKFNPLGDVIG 398
Query: 373 SGSSGSLYIWRPN 335 SG ++ +W N Sbjct: 399 SGMGVTVVLWNRN 411
>tr|B2R875|B2R875_HUMAN cDNA, FLJ93771, Homo sapiens damage-specific DNA binding protein 2, 48kDa (DDB2),mRNA (Damage-specific DNA binding protein 2, 48kDa, isoform CRA_a) OS=Homo sapiens GN=DDB2 PE=2 SV=1 Length = 427
Score = 43.5 bits (101), Expect = 0.008 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = -3
Query: 553 PSENLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLD 383 P NL V+GRY +F L ID D ++G+++ ++ D + I+ +N+ +P D Sbjct: 346 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 405
Query: 382 VLASGSSGSLYIW 344 LAS + IW Sbjct: 406 TLASAMGYHILIW 418
>tr|Q4FZK4|Q4FZK4_MOUSE Ddb2 protein OS=Mus musculus GN=Ddb2 PE=2 SV=1 Length = 243
Score = 42.0 bits (97), Expect = 0.022 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = -3
Query: 544 NLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374 NL V+GRY + L ID D S+G+++ ++ D + IT +N+ +P D LA Sbjct: 160 NLIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSGITSLNEFNPMGDTLA 219
Query: 373 SGSSGSLYIW 344 S + IW Sbjct: 220 STMGYHILIW 229
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