BP917197
Clone id YMU001_000097_E05
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGGTAGACTCAGTCTACACAAAAATTTCAGACTCCTTTACATAATGCACATTGAATAACT
GTACTTCAGACTCACTTTTGACCTGGTACAAATGCAGAATGTCATCGCTGTAATTTCTGT
TTTTCGCTAGGGGACGGTCGCACAGCTTTAGCTTTCCCTTGCTTCCCATTACAGAGCATG
TCGATCGTCGTCGTCGTCGTCTTCATCCTCATCAAACTTCCTCTTATCCTTTCCCTTCTT
TGCAGCAGCATGATCTGGAACTGTAAAGATGGTGACCTTTCTCTTGATCTCTTCTTCCGC
TTCCAATCCTTTATCGTCATCTTCCATTTCATCCGTTTGGTCTCCAGATATATAAAGATC
CTGAGCTACCAGAAGCAAGTACATCTAATCGAGGATGCAGCTTGTTTACTGGAGTGATGG
TCGTAATGTTTTTGTCCACAACCTCAGCTACAAGCTGCCCTGTGCTTACGTCAATAAAGT
CAATCGGATGCAAAGCAATCCCATTGAAATCATCACTTATGTAACGACCAATAACTGCTA
AATTTTCACTTGGAT
■■Homology search results ■■ -
sp_hit_id Q6NQ88
Definition sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana
Align length 71
Score (bit) 119.0
E-value 1.0e-26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917197|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_E05.
(555 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2 OS=Arabidopsi... 119 1e-26
sp|Q5ZJL7|DDB2_CHICK DNA damage-binding protein 2 OS=Gallus gall... 52 2e-06
sp|Q2YDS1|DDB2_DANRE DNA damage-binding protein 2 OS=Danio rerio... 46 1e-04
sp|Q0VBY8|DDB2_BOVIN DNA damage-binding protein 2 OS=Bos taurus ... 45 3e-04
sp|Q66JG1|DDB2_XENTR DNA damage-binding protein 2 OS=Xenopus tro... 44 4e-04
sp|Q92466|DDB2_HUMAN DNA damage-binding protein 2 OS=Homo sapien... 44 7e-04
sp|Q99J79|DDB2_MOUSE DNA damage-binding protein 2 OS=Mus musculu... 42 0.002
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=O... 30 6.0

>sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis
thaliana GN=DDB2 PE=1 SV=1
Length = 557

Score = 119 bits (298), Expect = 1e-26
Identities = 58/71 (81%), Positives = 64/71 (90%)
Frame = -3

Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371
SE+L VIGRYIS+++NG ALHPIDFID S GQLVAEV+D NITTITPVNKLHPR DVLAS
Sbjct: 422 SESLIVIGRYISENYNGTALHPIDFIDASNGQLVAEVMDPNITTITPVNKLHPRDDVLAS 481

Query: 370 GSSGSLYIWRP 338
GSS SL+IWRP
Sbjct: 482 GSSRSLFIWRP 492


>sp|Q5ZJL7|DDB2_CHICK DNA damage-binding protein 2 OS=Gallus gallus
GN=DDB2 PE=2 SV=1
Length = 507

Score = 52.0 bits (123), Expect = 2e-06
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLD 383
P +L V+GRY F G L +D D +TG++V ++ D N + I +NK +P D
Sbjct: 367 PRYDLIVVGRYPDPKFPGYTVNELRTVDIFDGNTGEMVCQLYDPNASGIISLNKFNPMGD 426

Query: 382 VLASGSSGSLYIW 344
LASG ++ IW
Sbjct: 427 TLASGMGFNILIW 439


>sp|Q2YDS1|DDB2_DANRE DNA damage-binding protein 2 OS=Danio rerio
GN=ddb2 PE=2 SV=2
Length = 496

Score = 46.2 bits (108), Expect = 1e-04
Identities = 27/70 (38%), Positives = 35/70 (50%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374
P +L V GRY D ID D ++G LV ++ D N I +NK P DVLA
Sbjct: 349 PMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLA 408

Query: 373 SGSSGSLYIW 344
SG ++ IW
Sbjct: 409 SGMGFNILIW 418


>sp|Q0VBY8|DDB2_BOVIN DNA damage-binding protein 2 OS=Bos taurus
GN=DDB2 PE=2 SV=1
Length = 426

Score = 44.7 bits (104), Expect = 3e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDV---STGQLVAEVVDKNITTITPVNKLHPRLD 383
P NL V+GRY +F + H + IDV S+G+++ ++ D + I +N+ +P D
Sbjct: 345 PRYNLIVVGRYPDPNFKSCSPHELRTIDVFDGSSGKIMYQLYDPESSGIMSLNEFNPMGD 404

Query: 382 VLASGSSGSLYIWRP 338
LAS + +W P
Sbjct: 405 TLASVMGYHILVWSP 419


>sp|Q66JG1|DDB2_XENTR DNA damage-binding protein 2 OS=Xenopus
tropicalis GN=ddb2 PE=2 SV=1
Length = 501

Score = 44.3 bits (103), Expect = 4e-04
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLD 383
P +L V+GRY F G L +D D G +V ++ D + I +NK +P D
Sbjct: 356 PRYDLIVVGRYPDPLFPGYMSDELRTVDVFDGQKGNIVCQLYDPYASGIVSLNKFNPMGD 415

Query: 382 VLASGSSGSLYIW 344
+LASG ++ IW
Sbjct: 416 LLASGMGFNILIW 428


>sp|Q92466|DDB2_HUMAN DNA damage-binding protein 2 OS=Homo sapiens
GN=DDB2 PE=1 SV=1
Length = 427

Score = 43.5 bits (101), Expect = 7e-04
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLD 383
P NL V+GRY +F L ID D ++G+++ ++ D + I+ +N+ +P D
Sbjct: 346 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 405

Query: 382 VLASGSSGSLYIW 344
LAS + IW
Sbjct: 406 TLASAMGYHILIW 418


>sp|Q99J79|DDB2_MOUSE DNA damage-binding protein 2 OS=Mus musculus
GN=Ddb2 PE=2 SV=1
Length = 432

Score = 42.0 bits (97), Expect = 0.002
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -3

Query: 544 NLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374
NL V+GRY + L ID D S+G+++ ++ D + IT +N+ +P D LA
Sbjct: 349 NLIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSGITSLNEFNPMGDTLA 408

Query: 373 SGSSGSLYIW 344
S + IW
Sbjct: 409 STMGYHILIW 418


>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40
OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2
SV=2
Length = 792

Score = 30.4 bits (67), Expect = 6.0
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3

Query: 526 RYISDDFNGIALHPIDFIDVSTGQLVAE-VVDKNITTITPVNKLHPRLDVLASGSSGS 356
R I++D + +HP+ S +LVA + +N+ ITP KL +L S SGS
Sbjct: 342 RRIAED---LLVHPVQVTIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGS 396


tr_hit_id A5BX89
Definition tr|A5BX89|A5BX89_VITVI Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis vinifera
Align length 72
Score (bit) 122.0
E-value 1.0e-26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917197|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_E05.
(555 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5BX89|A5BX89_VITVI Putative uncharacterized protein (Chromos... 122 1e-26
tr|Q9FU94|Q9FU94_ORYSJ cDNA clone:002-108-A04, full insert seque... 114 5e-24
tr|Q84KJ3|Q84KJ3_ORYSJ UV-damaged DNA binding protein 2 (Os01g01... 114 5e-24
tr|B8AD68|B8AD68_ORYSI Putative uncharacterized protein OS=Oryza... 114 5e-24
tr|A2ZP40|A2ZP40_ORYSJ Putative uncharacterized protein OS=Oryza... 114 5e-24
tr|A9SST7|A9SST7_PHYPA Predicted protein OS=Physcomitrella paten... 112 1e-23
tr|A8HTF1|A8HTF1_CHLRE UV-damaged DNA binding complex subunit 2 ... 75 3e-12
tr|Q4SUG1|Q4SUG1_TETNG Chromosome undetermined SCAF13949, whole ... 44 0.008
tr|B2R875|B2R875_HUMAN cDNA, FLJ93771, Homo sapiens damage-speci... 44 0.008
tr|Q4FZK4|Q4FZK4_MOUSE Ddb2 protein OS=Mus musculus GN=Ddb2 PE=2... 42 0.022
tr|A2AGR7|A2AGR7_MOUSE Damage specific DNA binding protein 2 OS=... 42 0.022
tr|A2AGR6|A2AGR6_MOUSE Damage specific DNA binding protein 2 OS=... 42 0.022
tr|B6NGN9|B6NGN9_BRAFL Putative uncharacterized protein (Fragmen... 37 0.70
tr|A9V5B9|A9V5B9_MONBE Predicted protein OS=Monosiga brevicollis... 36 1.2

>tr|A5BX89|A5BX89_VITVI Putative uncharacterized protein (Chromosome
chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis
vinifera GN=GSVIVT00024110001 PE=4 SV=1
Length = 559

Score = 122 bits (306), Expect = 1e-26
Identities = 57/72 (79%), Positives = 67/72 (93%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374
P+E+L V+GRYIS+++NG ALHPIDFID+STGQLVAEV+D NITTI+PVNKLHPR DVLA
Sbjct: 421 PAESLVVVGRYISENYNGAALHPIDFIDISTGQLVAEVMDPNITTISPVNKLHPRDDVLA 480

Query: 373 SGSSGSLYIWRP 338
SGSS SL+IWRP
Sbjct: 481 SGSSRSLFIWRP 492


>tr|Q9FU94|Q9FU94_ORYSJ cDNA clone:002-108-A04, full insert sequence
OS=Oryza sativa subsp. japonica GN=P0019D06.8 PE=2 SV=1
Length = 583

Score = 114 bits (284), Expect = 5e-24
Identities = 52/71 (73%), Positives = 66/71 (92%)
Frame = -3

Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371
+E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS
Sbjct: 444 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 503

Query: 370 GSSGSLYIWRP 338
GSS S++IW+P
Sbjct: 504 GSSRSIFIWKP 514


>tr|Q84KJ3|Q84KJ3_ORYSJ UV-damaged DNA binding protein 2
(Os01g0141700 protein) OS=Oryza sativa subsp. japonica
GN=UV-DDB2 PE=2 SV=1
Length = 584

Score = 114 bits (284), Expect = 5e-24
Identities = 52/71 (73%), Positives = 66/71 (92%)
Frame = -3

Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371
+E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS
Sbjct: 445 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 504

Query: 370 GSSGSLYIWRP 338
GSS S++IW+P
Sbjct: 505 GSSRSIFIWKP 515


>tr|B8AD68|B8AD68_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_00336 PE=4 SV=1
Length = 589

Score = 114 bits (284), Expect = 5e-24
Identities = 52/71 (73%), Positives = 66/71 (92%)
Frame = -3

Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371
+E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS
Sbjct: 450 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 509

Query: 370 GSSGSLYIWRP 338
GSS S++IW+P
Sbjct: 510 GSSRSIFIWKP 520


>tr|A2ZP40|A2ZP40_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000312 PE=4 SV=1
Length = 607

Score = 114 bits (284), Expect = 5e-24
Identities = 52/71 (73%), Positives = 66/71 (92%)
Frame = -3

Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371
+E +AVIGRYIS+++NGIALHPIDFID STG+L+AEV+D +ITTI+PVNKLHPR D+LAS
Sbjct: 450 TETVAVIGRYISENYNGIALHPIDFIDTSTGKLLAEVMDPDITTISPVNKLHPRDDILAS 509

Query: 370 GSSGSLYIWRP 338
GSS S++IW+P
Sbjct: 510 GSSRSIFIWKP 520


>tr|A9SST7|A9SST7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_188047 PE=4 SV=1
Length = 675

Score = 112 bits (280), Expect = 1e-23
Identities = 55/75 (73%), Positives = 62/75 (82%)
Frame = -3

Query: 550 SENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLAS 371
SE L VIGRYISDDFNG+ALHPIDFIDVS G+LV +V D +ITTI VNKLHPRLD +A+
Sbjct: 430 SECLIVIGRYISDDFNGVALHPIDFIDVSNGRLVEQVYDPSITTICTVNKLHPRLDCMAT 489

Query: 370 GSSGSLYIWRPNG*N 326
GSS SL+IWRP N
Sbjct: 490 GSSRSLFIWRPRDAN 504


>tr|A8HTF1|A8HTF1_CHLRE UV-damaged DNA binding complex subunit 2
protein OS=Chlamydomonas reinhardtii GN=DDB2 PE=4 SV=1
Length = 187

Score = 74.7 bits (182), Expect = 3e-12
Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPR-LDVL 377
P+E++ V+GRYIS+DF G+ALHP+D + + G L+ ++ D N+TTI+PVNK HPR D
Sbjct: 98 PTESVFVVGRYISEDFGGVALHPVDVMSAADGGLLRQLTDTNLTTISPVNKPHPRSFDAD 157

Query: 376 ASGSSGS 356
G +G+
Sbjct: 158 PGGKAGA 164


>tr|Q4SUG1|Q4SUG1_TETNG Chromosome undetermined SCAF13949, whole
genome shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00012482001 PE=4 SV=1
Length = 485

Score = 43.5 bits (101), Expect = 0.008
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIALHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374
P +L V GRY + +D D +T +LV ++ D + I +NK +P DV+
Sbjct: 339 PVYDLIVAGRYPDNRICLSDKRTVDLYDANTAELVCQLQDPTVAGIKSINKFNPLGDVIG 398

Query: 373 SGSSGSLYIWRPN 335
SG ++ +W N
Sbjct: 399 SGMGVTVVLWNRN 411


>tr|B2R875|B2R875_HUMAN cDNA, FLJ93771, Homo sapiens damage-specific
DNA binding protein 2, 48kDa (DDB2),mRNA
(Damage-specific DNA binding protein 2, 48kDa, isoform
CRA_a) OS=Homo sapiens GN=DDB2 PE=2 SV=1
Length = 427

Score = 43.5 bits (101), Expect = 0.008
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Frame = -3

Query: 553 PSENLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLD 383
P NL V+GRY +F L ID D ++G+++ ++ D + I+ +N+ +P D
Sbjct: 346 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGD 405

Query: 382 VLASGSSGSLYIW 344
LAS + IW
Sbjct: 406 TLASAMGYHILIW 418


>tr|Q4FZK4|Q4FZK4_MOUSE Ddb2 protein OS=Mus musculus GN=Ddb2 PE=2
SV=1
Length = 243

Score = 42.0 bits (97), Expect = 0.022
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = -3

Query: 544 NLAVIGRYISDDFNGIA---LHPIDFIDVSTGQLVAEVVDKNITTITPVNKLHPRLDVLA 374
NL V+GRY + L ID D S+G+++ ++ D + IT +N+ +P D LA
Sbjct: 160 NLIVVGRYPDPNLKSCVPYELRTIDVFDGSSGKMMCQLYDPGYSGITSLNEFNPMGDTLA 219

Query: 373 SGSSGSLYIW 344
S + IW
Sbjct: 220 STMGYHILIW 229