BP917204
Clone id YMU001_000097_F03
Library
Length 314
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CAGCCACACACACGCACACGCACACGCATTCTTCGAGTTGCGGCTGGATCGGCAGCTTTC
CTCTTGACGATCATTGTCCTCGCTACGCTAAGGTGAAACGAAAAGATGCTGGCAGTGTTT
CAAGGAAGTGTAGCCAGCGGGCCACAGGAGCTCTGTAGTCCTAGTGCAAAACCAGATGAG
CGGAAGTCTGGTTTGGAGATCTTGGAAATTTTCACCGCACAAAATGCAAATGCTGTTCGT
GTCGTGCTTCAAGATGCCGGAGGCATGGCTTACACTCATAATAAGCAAGCCTTGCTTAGA
CCCAGGTCATTTGC
■■Homology search results ■■ -
sp_hit_id P24805
Definition sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum
Align length 70
Score (bit) 38.1
E-value 0.014
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917204|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_F03.
(314 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana t... 38 0.014
sp|Q13W50|GLMM_BURXL Phosphoglucosamine mutase OS=Burkholderia x... 33 0.57
sp|Q9P2E7|PCD10_HUMAN Protocadherin-10 OS=Homo sapiens GN=PCDH10... 32 1.3
sp|P68337|IE68_EHV1K Immediate-early protein IE68 OS=Equine herp... 31 1.7
sp|Q6S6W5|IE68_EHV1B Immediate-early protein IE68 OS=Equine herp... 31 1.7
sp|P18346|IE68_EHV4 Immediate-early protein IE68 (Fragment) OS=E... 31 2.2
sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Hom... 30 4.9
sp|A1W6V9|MNMC_ACISJ tRNA 5-methylaminomethyl-2-thiouridine bios... 29 8.3

>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana
tabacum GN=TSJT1 PE=2 SV=1
Length = 149

Score = 38.1 bits (87), Expect = 0.014
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSPSA--KPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAYTH 279
MLAVF+ S+ P EL P A + E K+ EI E F ++ L + MA++H
Sbjct: 1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 280 NKQALLRPRS 309
+ L+PRS
Sbjct: 61 GNENPLQPRS 70


>sp|Q13W50|GLMM_BURXL Phosphoglucosamine mutase OS=Burkholderia
xenovorans (strain LB400) GN=glmM PE=3 SV=1
Length = 452

Score = 32.7 bits (73), Expect = 0.57
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +1

Query: 70 IIVLATLR*NEKMLAVFQGSVASGPQELCSPSAKPDERKSGLEILEIFTAQNANAV---- 237
++VLA ++ ++K LA G V PQ+L + KPD G +++ A+ +A+
Sbjct: 352 LLVLAAMKRSDKTLAELLGGVTLFPQKLINVRMKPDADWKGSDVIRRAIAKAEDALNGRG 411

Query: 238 RVVLQDAG 261
RV+++ +G
Sbjct: 412 RVLIRASG 419


>sp|Q9P2E7|PCD10_HUMAN Protocadherin-10 OS=Homo sapiens GN=PCDH10 PE=2
SV=2
Length = 1040

Score = 31.6 bits (70), Expect = 1.3
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Frame = +1

Query: 22 TRILRVAAGSAAF--LLTIIVLATLR*NEKMLAVFQGSVA----------SGPQELCSPS 165
T IL +A GS +F LL +IVLA EK L ++ + G C
Sbjct: 715 TLILIIALGSVSFIFLLAMIVLAVRCQKEKKLNIYTCLASDCCLCCCCCGGGGSTCCGRQ 774

Query: 166 AKPDERKSGLEILEIFTAQN--ANAVRVVLQDAGGMAYTHNKQ 288
A+ ++K + + + N +N +V ++++GG H+ Q
Sbjct: 775 ARARKKKLSKSDIMLVQSSNVPSNPAQVPIEESGGFGSHHHNQ 817


>sp|P68337|IE68_EHV1K Immediate-early protein IE68 OS=Equine
herpesvirus 1 (strain Kentucky A) GN=IR4 PE=3 SV=1
Length = 293

Score = 31.2 bits (69), Expect = 1.7
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Frame = +1

Query: 130 VASGPQELCSPSAKPDERK---------SGLEILEIFTAQNANAVRVVLQDAGGMAYTHN 282
+A GP C+P +PD + G+ I +++ +R L D M YTH
Sbjct: 79 LARGPGAFCAPPWRPDVNRLAGDVNRLFRGISTSSIHVTEDSRTLRRALLDFYAMGYTHT 138

Query: 283 KQAL 294
+ L
Sbjct: 139 RPTL 142


>sp|Q6S6W5|IE68_EHV1B Immediate-early protein IE68 OS=Equine
herpesvirus 1 (strain Ab4p) GN=IR4 PE=3 SV=1
Length = 293

Score = 31.2 bits (69), Expect = 1.7
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Frame = +1

Query: 130 VASGPQELCSPSAKPDERK---------SGLEILEIFTAQNANAVRVVLQDAGGMAYTHN 282
+A GP C+P +PD + G+ I +++ +R L D M YTH
Sbjct: 79 LARGPGAFCAPPWRPDVNRLAGDVNRLFRGISTSSIHVTEDSRTLRRALLDFYAMGYTHT 138

Query: 283 KQAL 294
+ L
Sbjct: 139 RPTL 142


>sp|P18346|IE68_EHV4 Immediate-early protein IE68 (Fragment)
OS=Equine herpesvirus 4 (strain 1942) PE=3 SV=1
Length = 273

Score = 30.8 bits (68), Expect = 2.2
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Frame = +1

Query: 130 VASGPQELCSPSAKPDERK---------SGLEILEIFTAQNANAVRVVLQDAGGMAYTHN 282
++ GP C+P +PD + G+ I +++ +R VL D M YTH
Sbjct: 67 LSRGPGAFCAPPWRPDVNRLAGDVNRLFRGISTSSIHVTEDSRVLRRVLLDFYAMGYTHA 126

Query: 283 KQAL 294
+ L
Sbjct: 127 RPTL 130


>sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Homo
sapiens GN=TRERF1 PE=1 SV=1
Length = 1200

Score = 29.6 bits (65), Expect = 4.9
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2

Query: 283 YYECKPCLRHLEARHEQHLHFVR*KFPRSPNQ 188
YY+ +P ++HL+ + +Q +H + R P+Q
Sbjct: 326 YYQPQPMMQHLQEQQQQQMHLQPPSYHRDPHQ 357


>sp|A1W6V9|MNMC_ACISJ tRNA 5-methylaminomethyl-2-thiouridine
biosynthesis bifunctional protein mnmC OS=Acidovorax sp.
(strain JS42) GN=mnmC PE=3 SV=1
Length = 639

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2

Query: 188 LVWRSWKFSPHKMQML-FVSCFKMPEAWLTLIISKP 292
+ W +W+ PH+ Q L FVSC P + L+ + P
Sbjct: 67 VTWAAWRADPHRPQRLHFVSCEAWPVSAADLLRAAP 102


tr_hit_id A9NR85
Definition tr|A9NR85|A9NR85_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 69
Score (bit) 77.4
E-value 3.0e-13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917204|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_F03.
(314 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NR85|A9NR85_PICSI Putative uncharacterized protein OS=Picea... 77 3e-13
tr|A9NP52|A9NP52_PICSI Putative uncharacterized protein OS=Picea... 77 3e-13
tr|A9P0N0|A9P0N0_PICSI Putative uncharacterized protein OS=Picea... 73 8e-12
tr|A9NTI5|A9NTI5_PICSI Putative uncharacterized protein OS=Picea... 72 1e-11
tr|A9NPI2|A9NPI2_PICSI Putative uncharacterized protein OS=Picea... 72 1e-11
tr|B8LRD8|B8LRD8_PICSI Putative uncharacterized protein OS=Picea... 59 9e-08
tr|A9NZU4|A9NZU4_PICSI Putative uncharacterized protein OS=Picea... 59 1e-07
tr|A9NKZ6|A9NKZ6_PICSI Putative uncharacterized protein OS=Picea... 59 1e-07
tr|B8LMG6|B8LMG6_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07
tr|A9NXI3|A9NXI3_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07
tr|A9NXH4|A9NXH4_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07
tr|A9NV94|A9NV94_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07
tr|A9NMJ2|A9NMJ2_PICSI Putative uncharacterized protein OS=Picea... 57 6e-07
tr|A9SVZ6|A9SVZ6_PHYPA Predicted protein OS=Physcomitrella paten... 54 3e-06
tr|A9TLC6|A9TLC6_PHYPA Predicted protein OS=Physcomitrella paten... 54 5e-06
tr|B8LMZ0|B8LMZ0_PICSI Putative uncharacterized protein OS=Picea... 53 9e-06
tr|Q94KH9|Q94KH9_AVIMR Aluminium induced protein OS=Avicennia ma... 52 1e-05
tr|Q2RAK8|Q2RAK8_ORYSJ Os11g0147800 protein OS=Oryza sativa subs... 52 1e-05
tr|A2ZBF1|A2ZBF1_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05
tr|B4YYA6|B4YYA6_THEHA ST7-5-2 OS=Thellungiella halophila PE=2 SV=1 52 1e-05
tr|Q94BR2|Q94BR2_ARATH Putative aluminium-induced protein OS=Ara... 52 2e-05
tr|Q2V367|Q2V367_ARATH Uncharacterized protein At5g19140.2 OS=Ar... 52 2e-05
tr|Q2QXS4|Q2QXS4_ORYSJ Os12g0145100 protein OS=Oryza sativa subs... 52 2e-05
tr|A2ZI12|A2ZI12_ORYSI Putative uncharacterized protein OS=Oryza... 52 2e-05
tr|A9NZE6|A9NZE6_PICSI Putative uncharacterized protein OS=Picea... 51 3e-05
tr|A8IXL5|A8IXL5_BRACM Aluminum-induced protein OS=Brassica camp... 51 3e-05
tr|O64461|O64461_BRANA Aluminum-induced OS=Brassica napus GN=bal... 50 4e-05
tr|B4FQW0|B4FQW0_MAIZE Putative uncharacterized protein OS=Zea m... 50 4e-05
tr|Q43661|Q43661_WHEAT Wali7 protein (Fragment) OS=Triticum aest... 46 8e-04
tr|A9PEF3|A9PEF3_POPTR Putative uncharacterized protein OS=Popul... 46 0.001

>tr|A9NR85|A9NR85_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 249

Score = 77.4 bits (189), Expect = 3e-13
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSPSAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAYTHNK 285
ML V + SVA GP+EL SP+ K D+RK+G ++++ F + N+ V + L DAG MAYTH++
Sbjct: 1 MLTVLKRSVAQGPEELTSPNGKADQRKNGSDVVQSFVSANSGTVCINLGDAGAMAYTHSR 60

Query: 286 QALLRPRSF 312
Q LL PRSF
Sbjct: 61 QPLLTPRSF 69


>tr|A9NP52|A9NP52_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 249

Score = 77.4 bits (189), Expect = 3e-13
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSPSAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAYTHNK 285
ML V + SVA GP+EL SP+ K D+RK+G ++++ F + N+ V + L DAG MAYTH++
Sbjct: 1 MLTVLKRSVAQGPEELTSPNGKADQRKNGSDVVQSFVSANSGTVCINLGDAGAMAYTHSR 60

Query: 286 QALLRPRSF 312
Q LL PRSF
Sbjct: 61 QPLLTPRSF 69


>tr|A9P0N0|A9P0N0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 249

Score = 72.8 bits (177), Expect = 8e-12
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSPSAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAYTHNK 285
ML V + SVA GP+EL SP + D+RK+G++++ F + N+ V + L D G +AYTH++
Sbjct: 1 MLTVLKKSVAQGPEELTSPHVEADKRKNGIDLVHSFVSANSGTVSINLGDVGAIAYTHSR 60

Query: 286 QALLRPRSF 312
Q LL PRSF
Sbjct: 61 QPLLTPRSF 69


>tr|A9NTI5|A9NTI5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 249

Score = 72.0 bits (175), Expect = 1e-11
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSPSAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAYTHNK 285
ML V + SVA GP+EL SP + D+RK+G++++ F + N+ V + L D G +AYTH++
Sbjct: 1 MLTVLKKSVAQGPEELTSPHVEADKRKNGIDLVHSFVSANSGTVCINLGDVGAIAYTHSR 60

Query: 286 QALLRPRSF 312
Q LL PRSF
Sbjct: 61 QPLLTPRSF 69


>tr|A9NPI2|A9NPI2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 249

Score = 72.0 bits (175), Expect = 1e-11
Identities = 33/69 (47%), Positives = 48/69 (69%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSPSAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAYTHNK 285
ML V + SVA GP+EL SP + D+RK+G++++ F + ++ V + L D G MAYTH++
Sbjct: 1 MLTVLKRSVAQGPEELTSPHVEADQRKNGIDLVHSFLSADSGTVCIKLGDVGAMAYTHSR 60

Query: 286 QALLRPRSF 312
Q LL PRSF
Sbjct: 61 QPLLTPRSF 69


>tr|B8LRD8|B8LRD8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 252

Score = 59.3 bits (142), Expect = 9e-08
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 3/72 (4%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSPSAK-PDERKSGLEILEIFTAQNANAVRVVLQD--AGGMAYT 276
MLAVF+ S+ GP+EL SP++K +KSG+EI+ F + + A+ + D GGMAY
Sbjct: 2 MLAVFEKSIGQGPEELTSPTSKRAANQKSGMEIMNSFVSSMSQAISIRFGDGGGGGMAYA 61

Query: 277 HNKQALLRPRSF 312
H K+ + +PR F
Sbjct: 62 HVKETVRQPRLF 73


>tr|A9NZU4|A9NZU4_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 245

Score = 58.9 bits (141), Expect = 1e-07
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSP----SAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAY 273
MLA+F+ +VA GP+EL P S PD +KS +L F ++ V ++D MA+
Sbjct: 1 MLAIFKSTVAYGPEELRFPTGEISPSPDLKKSSSALLRSFLDALPQSISVTMEDMATMAF 60

Query: 274 THNKQALLRPRSF 312
TH+ Q+L RPRSF
Sbjct: 61 THSNQSLFRPRSF 73


>tr|A9NKZ6|A9NKZ6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 245

Score = 58.9 bits (141), Expect = 1e-07
Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSP----SAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAY 273
MLA+F+ +VA GP+EL P S PD +KS +L F ++ V ++D MA+
Sbjct: 1 MLAIFKSTVAYGPEELRFPTGEISPSPDLKKSSSALLRSFLDALPQSISVTMEDMATMAF 60

Query: 274 THNKQALLRPRSF 312
TH+ Q+L RPRSF
Sbjct: 61 THSNQSLFRPRSF 73


>tr|B8LMG6|B8LMG6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 241

Score = 56.6 bits (135), Expect = 6e-07
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSP----SAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAY 273
MLA+F +VA GP+EL SP S PD +K+ +L F ++ V + + MA+
Sbjct: 1 MLAIFNSAVAYGPEELRSPTGEISTSPDLKKNSSALLSSFMDAFPQSISVKMDEMATMAF 60

Query: 274 THNKQALLRPRSF 312
TH+ Q+LL PRSF
Sbjct: 61 THSNQSLLHPRSF 73


>tr|A9NXI3|A9NXI3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 238

Score = 56.6 bits (135), Expect = 6e-07
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +1

Query: 106 MLAVFQGSVASGPQELCSP----SAKPDERKSGLEILEIFTAQNANAVRVVLQDAGGMAY 273
MLA+F +VA GP+EL SP S PD +K+ +L F ++ V + + MA+
Sbjct: 1 MLAIFNSAVAYGPEELRSPRGEISTSPDLKKNSSALLSSFLDAFPQSISVKMDEMATMAF 60

Query: 274 THNKQALLRPRSF 312
TH+ Q+LL PRSF
Sbjct: 61 THSNQSLLHPRSF 73