NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917206
Clone id YMU001_000097_F05
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGCGGCCGCAGGAATTTTTTTTTTTTTCCCGGTAGGAGACGTGCTCCTCTCCACTTGAAT
CTCCAGGTACGCATCTATTGATTTGGTGTTATTCCATTTTCAGTATGCTTTGCTCGGATT
TTCAAGACGTATAAGTACGCTTGAAATGTTATAGAGCCATGCCAAGGGCATGTCGGCACA
AAGTACTTTGGGCCAAGTGTCCAATCTATCTTTCTGCCTTATGTTGTTACGAACCTACTT
GTAGTGGTTCAATTCTGGCACATGTTGTCACATGGGATACAACATGGTCTAGGAACTCAA
GGAGTTCGATTTAGCCAGTGGAGCAAGACTAATGAGGATCCCTCTCACTCCCGTCGTAGA
GTGTTTGCAGTTACCTCCACACACAAGTACATCTTGTACTTGAAGGATGTTCCTTTTTAC
ACATCCTTACATGAGACATATGCCACATGTGGAGAATATGAGTCTCTAGACAGACACTGG
C
■■Homology search results ■■ -
sp_hit_id P38811
Definition sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Saccharomyces cerevisiae
Align length 65
Score (bit) 30.4
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917206|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_F05.
         (454 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Sacch...    30   3.8  
sp|Q9HCC8|GDPD2_HUMAN Glycerophosphodiester phosphodiesterase do...    30   4.9  
sp|A4WNY6|ATP6_RHOS5 ATP synthase subunit a OS=Rhodobacter sphae...    30   6.4  
sp|Q3IZ12|ATP6_RHOS4 ATP synthase subunit a OS=Rhodobacter sphae...    30   6.4  
sp|A3PN85|ATP6_RHOS1 ATP synthase subunit a OS=Rhodobacter sphae...    30   6.4  
sp|B3QF37|ATP6_RHOPT ATP synthase subunit a OS=Rhodopseudomonas ...    30   6.4  
sp|Q6NBI2|ATP6_RHOPA ATP synthase subunit a OS=Rhodopseudomonas ...    30   6.4  
sp|P36146|LAS1_YEAST Protein LAS1 OS=Saccharomyces cerevisiae GN...    29   8.4  

>sp|P38811|TRA1_YEAST Transcription-associated protein 1
            OS=Saccharomyces cerevisiae GN=TRA1 PE=1 SV=1
          Length = 3744

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +1

Query: 124  IEPCQGHVGTKYFGPSVQSIF--LPYVVTNLLVVVQFWHMLSHGIQHGLGTQGVRFSQWS 297
            +E C  ++  +YF P ++ +   +   + NLL    F H +SH +   LG  G R  Q+ 
Sbjct: 901  LELCIDNLTAEYFDPIIEPVIDDVSKALFNLLQPQPFNHAISHNVVRILGKLGGRNRQFL 960

Query: 298  KTNED 312
            K   D
Sbjct: 961  KPPTD 965


>sp|Q9HCC8|GDPD2_HUMAN Glycerophosphodiester phosphodiesterase
           domain-containing protein 2 OS=Homo sapiens GN=GDPD2
           PE=2 SV=1
          Length = 539

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 427 LHMWHMSHVRMCKKEHPSSTRCTCVW 350
           LH  +  H R C +E   +++C C+W
Sbjct: 15  LHCLYSCHWRKCPRERMQTSKCDCIW 40


>sp|A4WNY6|ATP6_RHOS5 ATP synthase subunit a OS=Rhodobacter
           sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpB PE=3
           SV=1
          Length = 261

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 103 YKYA*NVIEPCQGHVGTKYFGPSVQSIFLPYVVTNLL 213
           Y +  N++E   GH G KYF P V ++FL  +  N+L
Sbjct: 85  YGFIHNMVEEVTGHEGVKYF-PYVMTLFLFVLCGNVL 120


>sp|Q3IZ12|ATP6_RHOS4 ATP synthase subunit a OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=atpB PE=3 SV=1
          Length = 247

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 103 YKYA*NVIEPCQGHVGTKYFGPSVQSIFLPYVVTNLL 213
           Y +  N++E   GH G KYF P V ++FL  +  N+L
Sbjct: 71  YGFIHNMVEEVTGHEGVKYF-PYVMTLFLFVLCGNVL 106


>sp|A3PN85|ATP6_RHOS1 ATP synthase subunit a OS=Rhodobacter
           sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpB PE=3
           SV=1
          Length = 261

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 103 YKYA*NVIEPCQGHVGTKYFGPSVQSIFLPYVVTNLL 213
           Y +  N++E   GH G KYF P V ++FL  +  N+L
Sbjct: 85  YGFIHNMVEEVTGHEGVKYF-PYVMTLFLFVLCGNVL 120


>sp|B3QF37|ATP6_RHOPT ATP synthase subunit a OS=Rhodopseudomonas
           palustris (strain TIE-1) GN=atpB PE=3 SV=1
          Length = 248

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 100 TYKYA*NVIEPCQGHVGTKYFGPSVQSIFLPYVVTNLLVVVQFWHMLS 243
           +Y++  N+I    G  G K+F P V S+F+   V+NL+ +V +   +S
Sbjct: 64  SYEFVANMIRSTAGKEGLKFF-PLVFSLFMFIAVSNLIGIVPYTFTVS 110


>sp|Q6NBI2|ATP6_RHOPA ATP synthase subunit a OS=Rhodopseudomonas
           palustris GN=atpB PE=3 SV=1
          Length = 248

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 100 TYKYA*NVIEPCQGHVGTKYFGPSVQSIFLPYVVTNLLVVVQFWHMLS 243
           +Y++  N+I    G  G K+F P V S+F+   V+NL+ +V +   +S
Sbjct: 64  SYEFVANMIRSTAGKEGLKFF-PLVFSLFMFIAVSNLIGIVPYTFTVS 110


>sp|P36146|LAS1_YEAST Protein LAS1 OS=Saccharomyces cerevisiae
           GN=LAS1 PE=1 SV=1
          Length = 502

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -2

Query: 201 NNIRQKDRLDTWPKVLCADMPLAWLYNISSVLIRLENPSKAY*KWNN---TKSIDAYLEI 31
           NN   K++   W K++  +     LY   S+L +LE        W N    K ID+ +EI
Sbjct: 345 NNKNFKNKWQNWEKLIDENASYLILYFCQSMLAKLETEKITGNSWRNKKRRKQIDSTVEI 404

Query: 30  QVE 22
           + +
Sbjct: 405 EAK 407
tr_hit_id A4YGF7
Definition tr|A4YGF7|A4YGF7_METS5 Transcriptional activator, TenA family OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
Align length 44
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917206|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_F05.
         (454 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4YGF7|A4YGF7_METS5 Transcriptional activator, TenA family OS...    34   3.2  
tr|B3LYL9|B3LYL9_DROAN GF18233 OS=Drosophila ananassae GN=GF1823...    33   7.1  
tr|B8HKZ3|B8HKZ3_9CHRO Beta-ketoacyl synthase OS=Cyanothece sp. ...    33   9.3  

>tr|A4YGF7|A4YGF7_METS5 Transcriptional activator, TenA family
           OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348)
           GN=Msed_1351 PE=4 SV=1
          Length = 226

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 168 WPKVLCADMPLAWLY-NISSVLIRLENPSKAY*KWNNTKSIDAY 40
           +P+VL A +P  W+Y ++   L++L +P + Y +W NT   + Y
Sbjct: 122 FPEVLAAVLPCYWIYMHVGKSLVKLGSPVEEYRRWINTYGGEEY 165


>tr|B3LYL9|B3LYL9_DROAN GF18233 OS=Drosophila ananassae GN=GF18233
           PE=4 SV=1
          Length = 239

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 23/68 (33%), Positives = 32/68 (47%)
 Frame = +1

Query: 133 CQGHVGTKYFGPSVQSIFLPYVVTNLLVVVQFWHMLSHGIQHGLGTQGVRFSQWSKTNED 312
           C GH   +YF   +  +F   V T L +V  F + LSHG      T G +FS+      D
Sbjct: 152 CIGHNNHRYF---IWLLFYMSVGTGLALVYNFIYTLSHGRI----TLGQKFSKGLSKTTD 204

Query: 313 PSHSRRRV 336
            SH+  R+
Sbjct: 205 HSHTNSRI 212


>tr|B8HKZ3|B8HKZ3_9CHRO Beta-ketoacyl synthase OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_2882 PE=4 SV=1
          Length = 2462

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 226 FWHMLSHGIQHGLGTQGVRFSQWSKTNEDPSH 321
           FWH L+HGI         R+S+W   + DP+H
Sbjct: 364 FWHNLTHGIDTIAEVSDDRWSEWDWYHPDPAH 395