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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917212
Clone id YMU001_000097_G01
Library
Length 407
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGATCTATGATGAAATGTTGCCCAATTCCCCCTTTAGTAATGTAGTGCTGTTTCTTTTAT
GCTTTATATGTCTGTTTATTTGTCACCTTCCTTTAAAATAAAAAGAATACATCTTATCTT
AACTCTATACCGGTATACAGTTATACTGTCTCAATTTGCCTTCTTACGTCTTTTCATACA
ATATGAGAGTAAATCACCGAAGAGTCATTGCATGGGAGGTAAAGGGGGTCCTGATTTAGA
TTGTCTCCTGCATAAGGCATTGGAGTAAGGAGGTAGTGGTCTTGAGGCCAAGTTGTGGTG
CGAGAGAGTCCTCTTGTGGCAAGAAGTTACGTGATAATTACTTTGTGGTGTTACAACTGC
CTTCTGGTTGCAGGCTGTGGCCCTGATTGGGTCATATAAATTCTTGA
■■Homology search results ■■ -
sp_hit_id Q9BXT4
Definition sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens
Align length 62
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917212|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_G01.
         (407 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo ...    31   2.2  
sp|Q8A5W2|G6PI_BACTN Glucose-6-phosphate isomerase OS=Bacteroide...    30   3.7  
sp|Q9BGP6|LRRT3_MACFA Leucine-rich repeat transmembrane neuronal...    30   4.8  
sp|Q86VH5|LRRT3_HUMAN Leucine-rich repeat transmembrane neuronal...    30   4.8  
sp|P34308|CAN_CAEEL Calpain clp-1 OS=Caenorhabditis elegans GN=c...    30   4.8  
sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-con...    29   8.2  
sp|Q08759|MYB_XENLA Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1     29   8.2  
sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium ...    29   8.2  

>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo
           sapiens GN=TDRD1 PE=1 SV=2
          Length = 1180

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = -3

Query: 402 NLYDPIRATACNQ-------KAVVTPQSNYHVTSCHKRTLSHHNLASRPLPPYSNALCRR 244
           +L  P+R+T C++       +     Q+ Y  T+C +R  S H++  RP+ P  + L  +
Sbjct: 160 SLGPPLRSTTCHRCGLFGSLRCSQCKQTYYCSTACQRRDWSAHSIVCRPVQPNFHKLENK 219

Query: 243 QS 238
            S
Sbjct: 220 SS 221


>sp|Q8A5W2|G6PI_BACTN Glucose-6-phosphate isomerase OS=Bacteroides
           thetaiotaomicron GN=pgi PE=3 SV=1
          Length = 445

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 308 LSRTTTWPQDHYLLTPMPYAGDNLNQDPLY 219
           LS + TW QD      M YAG N+++D LY
Sbjct: 93  LSNSFTWLQDKKTAPVMIYAGHNISEDYLY 122


>sp|Q9BGP6|LRRT3_MACFA Leucine-rich repeat transmembrane neuronal
           protein 3 OS=Macaca fascicularis GN=LRRTM3 PE=2 SV=1
          Length = 581

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 357 VVTPQSNYHVTSCHKRTLSHHNLA-SRPLPPYSNALCRRQSKSGPPLPP 214
           V+    NY +  C K T    +LA + P P +   L R + +S PPLPP
Sbjct: 351 VIDAVKNYSI--CGKSTTERFDLARALPKPTFKPKLPRPKHESKPPLPP 397


>sp|Q86VH5|LRRT3_HUMAN Leucine-rich repeat transmembrane neuronal
           protein 3 OS=Homo sapiens GN=LRRTM3 PE=2 SV=2
          Length = 581

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 357 VVTPQSNYHVTSCHKRTLSHHNLA-SRPLPPYSNALCRRQSKSGPPLPP 214
           V+    NY +  C K T    +LA + P P +   L R + +S PPLPP
Sbjct: 351 VIDAVKNYSI--CGKSTTERFDLARALPKPTFKPKLPRPKHESKPPLPP 397


>sp|P34308|CAN_CAEEL Calpain clp-1 OS=Caenorhabditis elegans
           GN=clp-1 PE=2 SV=4
          Length = 780

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 302 RTTTWPQDHYLLTPMPYAGDNLNQDPLYLPCNDSSVIYS 186
           R TT PQD Y L         L +DP +L  NDSS+ +S
Sbjct: 295 RPTTEPQDFYELRDQCLESKRLFEDPQFL-ANDSSLFFS 332


>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger
           domain-containing protein 1 OS=Homo sapiens GN=RCHY1
           PE=1 SV=1
          Length = 261

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
 Frame = -1

Query: 308 LSRTTTWPQ--DHYLLTPMPYAGDNLNQDPLYLPCNDSSVIYSHIV 177
           L  T  W Q  D    TPMP    N+  D L   CN  S +  HI+
Sbjct: 191 LDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHIL 236


>sp|Q08759|MYB_XENLA Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1
          Length = 624

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 369 NQKAVVT--PQSNYHVTSCHKRTLSHHNLASRPLPPYSNALCRRQSKSGP 226
           NQ  +VT  P+SN+ +T  H R  + H+ AS    PY + +   Q+ S P
Sbjct: 203 NQHTIVTNFPKSNHLMTFTHTRASAEHSQASTSSFPYYH-IAEHQNASYP 251


>sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium
            discoideum GN=kif1 PE=1 SV=1
          Length = 2205

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 327  TSCHKRTLSHHNLASRPLPPYSNALCRRQSKSG-PPLPPMQ 208
            T  + R     N    P+ PYSN    +QS S  PPLP  Q
Sbjct: 1099 TPNNSRIAGIQNTPGTPMTPYSNQTNNQQSSSSQPPLPQQQ 1139
tr_hit_id Q2RPQ9
Definition tr|Q2RPQ9|Q2RPQ9_RHORT Glycosyl transferase, group 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
Align length 110
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917212|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_G01.
         (407 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2RPQ9|Q2RPQ9_RHORT Glycosyl transferase, group 1 OS=Rhodospi...    35   2.5  
tr|Q87AJ7|Q87AJ7_XYLFT Beta-hexosaminidase OS=Xylella fastidiosa...    34   4.2  
tr|B2I970|B2I970_XYLF2 Beta-N-acetylhexosaminidase OS=Xylella fa...    34   4.2  
tr|B0U4V6|B0U4V6_XYLFM Beta-N-acetylhexosaminidase OS=Xylella fa...    34   4.2  
tr|Q3RGJ6|Q3RGJ6_XYLFA Beta-N-acetylhexosaminidase OS=Xylella fa...    34   4.2  
tr|Q3QZW0|Q3QZW0_XYLFA Beta-N-acetylhexosaminidase (Fragment) OS...    34   4.2  
tr|B6HID3|B6HID3_PENCH Pc21g01410 protein OS=Penicillium chrysog...    34   4.2  

>tr|Q2RPQ9|Q2RPQ9_RHORT Glycosyl transferase, group 1
           OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
           GN=Rru_A3091 PE=4 SV=1
          Length = 770

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
 Frame = -3

Query: 399 LYDPIRATACNQKAVVTPQSNYHVTSCHKRTLSHHNLASRPLPPYSNALCRRQSKSGPPL 220
           +YD I   A  Q  V+ P+ N+     H  T SH      P+         R     PP+
Sbjct: 30  VYDQICRNASEQVVVLAPRRNHETGQVHPGTDSHDRACGYPV--------HRVDYLRPPI 81

Query: 219 P--PMQ*L--FGDLLSYCMKRRKKAN*DSI-TVYRYRVKIRCILFILKEG 85
           P  P   L    D L Y +    +A   +I  + RYRVK+ CI  +++ G
Sbjct: 82  PQGPRSRLGHLTDALRYDLPVMARALAAAIGLIVRYRVKVVCIGELVQNG 131


>tr|Q87AJ7|Q87AJ7_XYLFT Beta-hexosaminidase OS=Xylella fastidiosa
           (strain Temecula1 / ATCC 700964) GN=nahA PE=4 SV=1
          Length = 812

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 327 TSCHKRTLSHHNLASRPLPPYSNALCRRQSKSGPPLPPM 211
           T+    T SHH  +  PLPP        ++ SGPPLPP+
Sbjct: 28  TTSFDTTASHHKKSQHPLPP--------RTASGPPLPPL 58


>tr|B2I970|B2I970_XYLF2 Beta-N-acetylhexosaminidase OS=Xylella
           fastidiosa (strain M23) GN=XfasM23_1927 PE=4 SV=1
          Length = 812

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 327 TSCHKRTLSHHNLASRPLPPYSNALCRRQSKSGPPLPPM 211
           T+    T SHH  +  PLPP        ++ SGPPLPP+
Sbjct: 28  TTSFDTTASHHKKSQHPLPP--------RTASGPPLPPL 58


>tr|B0U4V6|B0U4V6_XYLFM Beta-N-acetylhexosaminidase OS=Xylella
           fastidiosa (strain M12) GN=Xfasm12_2003 PE=4 SV=1
          Length = 812

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 327 TSCHKRTLSHHNLASRPLPPYSNALCRRQSKSGPPLPPM 211
           T+    T SHH  +  PLPP        ++ SGPPLPP+
Sbjct: 28  TTSFDTTASHHKKSQHPLPP--------RTASGPPLPPL 58


>tr|Q3RGJ6|Q3RGJ6_XYLFA Beta-N-acetylhexosaminidase OS=Xylella
           fastidiosa Dixon GN=XfasaDRAFT_1685 PE=4 SV=1
          Length = 865

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 327 TSCHKRTLSHHNLASRPLPPYSNALCRRQSKSGPPLPPM 211
           T+    T SHH  +  PLPP        ++ SGPPLPP+
Sbjct: 81  TTSFDTTASHHKKSQHPLPP--------RTASGPPLPPL 111


>tr|Q3QZW0|Q3QZW0_XYLFA Beta-N-acetylhexosaminidase (Fragment)
           OS=Xylella fastidiosa Ann-1 GN=XfasoDRAFT_0313 PE=4 SV=1
          Length = 795

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 327 TSCHKRTLSHHNLASRPLPPYSNALCRRQSKSGPPLPPM 211
           T+    T SHH  +  PLPP        ++ SGPPLPP+
Sbjct: 81  TTSFDTTASHHKKSQHPLPP--------RTASGPPLPPL 111


>tr|B6HID3|B6HID3_PENCH Pc21g01410 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc21g01410 PE=4 SV=1
          Length = 646

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = -1

Query: 395 MTQSGPQPATRRQL*HHKVIIT*LLATRGLSRTTTWPQDHYLLTPMPYAGDNLNQDPLY 219
           + QS P P TR +L H  +    L+  R       W +D  L +P P + DN+ QDPLY
Sbjct: 434 IVQSHPSPETRFKLIHKILEDDRLVPAR--DSAIAWLKDELLRSPTP-SSDNIFQDPLY 489