| BP917216 |
| Clone id |
YMU001_000097_G05 |
| Library |
YMU01 |
| Length |
519 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000097_G05. |
| Accession |
BP917216 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL4032Contig1 |
| Sequence |
AGCCAAAGGAACTCCCTACGGTACAAGCAACAATGGAAAGCAGACATCTACATGTCAACA
AGGAGAACCGACATATGTGGATGCTGATGAAAGACAAACCAGTGGCAAACAAGAAAGTGC
CAAACCATCGATAAAAATCGGCAGCAACAAAATACCAATGGAAAGCCAAGGCCATAAGGC
CCATAGCTATTACATCCCAGCCAATTCTATCTTCAGAAACAGCTACGAGTCCATCAACAG
TGTCGGCAAAGCAATTGCCTCTTGCCAAAAAGACAATTAAACAGAGAGTAGTAGAGTTGC
ATCTGCTACTCGCAAAGAAAGCAGGAAACCTCGACGGCGAATGCCAATAAGCATCTTGCT
CATTCCCTTCTCTTGCACAGCATTAATTTTTCCATGCATTGACCGAGTATGCATAAAATA
GGGCCACATTAATCGGCCAGGCATTAGCACAATTTTTTCAACCTATGCACGCCACATACT
CCGAGGCAAAACCTTGTCGTCCGGGAGGACTCCGACTAG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q68FU0 |
| Definition |
sp|Q68FU0|TM174_RAT Transmembrane protein 174 OS=Rattus norvegicus |
| Align length |
55 |
| Score (bit) |
32.0 |
| E-value |
1.8 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917216|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_G05.
(519 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q68FU0|TM174_RAT Transmembrane protein 174 OS=Rattus norvegic... 32 1.8
sp|Q9DCX7|TM174_MOUSE Transmembrane protein 174 OS=Mus musculus ... 32 2.3
sp|Q96N23|CL055_HUMAN Uncharacterized protein C12orf55 OS=Homo s... 32 2.3
sp|Q5R8E0|TM174_PONAB Transmembrane protein 174 OS=Pongo abelii ... 31 3.0
sp|Q8WUU8|TM174_HUMAN Transmembrane protein 174 OS=Homo sapiens ... 31 3.0
sp|P48558|YN45_YEAST Uncharacterized vacuolar membrane protein Y... 31 4.0
sp|Q9YEA0|VATI_AERPE V-type ATP synthase subunit I OS=Aeropyrum ... 30 5.2
sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcriptio... 30 5.2
sp|O74477|MCA1_SCHPO Metacaspase-1 OS=Schizosaccharomyces pombe ... 30 5.2
sp|P24278|ZBT25_HUMAN Zinc finger and BTB domain-containing prot... 30 6.8
sp|A1YEX3|ZBT25_GORGO Zinc finger and BTB domain-containing prot... 30 6.8
sp|Q8N9M5|TM102_HUMAN Transmembrane protein 102 OS=Homo sapiens ... 30 6.8
sp|A4VHN7|RL16_PSEU5 50S ribosomal protein L16 OS=Pseudomonas st... 30 6.8
sp|Q3IF18|RL16_PSEHT 50S ribosomal protein L16 OS=Pseudoalteromo... 30 6.8
sp|Q47QX1|MURD_THEFY UDP-N-acetylmuramoylalanine--D-glutamate li... 30 6.8
sp|Q8BB47|IE2_HHV6G Immediate-early protein 2 OS=Human herpesvir... 30 6.8
sp|Q5ABG1|SET1_CANAL Histone-lysine N-methyltransferase, H3 lysi... 30 8.8
sp|P10923|OSTP_MOUSE Osteopontin OS=Mus musculus GN=Spp1 PE=1 SV=1 30 8.8
>sp|Q68FU0|TM174_RAT Transmembrane protein 174 OS=Rattus norvegicus
GN=Tmem174 PE=2 SV=1
Length = 243
Score = 32.0 bits (71), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -3
Query: 190 IAMGLMALAFH---WY-FVAADFYRW---FGTFLFATGLSFISIHICRFSLLTCR 47
I +GL+ + F W + + W G L + G++FI I +C+F +L+C+
Sbjct: 45 IFLGLVGITFTVMGWIKYQGVSHFEWTQLLGPILLSVGVTFILISVCKFKMLSCQ 99
>sp|Q9DCX7|TM174_MOUSE Transmembrane protein 174 OS=Mus musculus
GN=Tmem174 PE=2 SV=1
Length = 243
Score = 31.6 bits (70), Expect = 2.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -3
Query: 190 IAMGLMALAFH---WY-FVAADFYRW---FGTFLFATGLSFISIHICRFSLLTCR 47
I +GL+ + F W + + W G L + G++FI I +C+F +L+C+
Sbjct: 45 IFLGLVGITFTVMGWIKYQGVSHFEWTQLLGPILLSVGVTFILIAVCKFKMLSCQ 99
>sp|Q96N23|CL055_HUMAN Uncharacterized protein C12orf55 OS=Homo
sapiens GN=C12orf55 PE=2 SV=2
Length = 812
Score = 31.6 bits (70), Expect = 2.3
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Frame = +2
Query: 59 QGEPTYVDADERQTSGKQESAKPSIKIGSNKIPMESQGHKAHS---YYIPANSI-FRNSY 226
QG P+ +D+ TSG P+ +++ P ES+G S + P +S+ Y
Sbjct: 4 QGSPSSSPSDDSTTSGSLPELPPT-STATSRSPPESKGSSRSSLLQWTCPEDSLPLAVFY 62
Query: 227 ESINSVGKAIASCQKD-----N*TESSRVASATRKESRKPRRRMPISILLI 364
+++ +ASC+K+ + + T +E + RRR S+ I
Sbjct: 63 GPLDAKNPLLASCEKEIQELLGFMRKKKALATTEEEKHEFRRRCATSLFNI 113
>sp|Q5R8E0|TM174_PONAB Transmembrane protein 174 OS=Pongo abelii
GN=TMEM174 PE=2 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 3.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -3
Query: 190 IAMGLMALAFH---WY-FVAADFYRW---FGTFLFATGLSFISIHICRFSLLTCR 47
I +GL+ + F W + + W G L + G++FI I +C+F +L+C+
Sbjct: 45 IFLGLVGITFTVMGWIKYQGVSHFEWTQLLGPVLLSVGVTFILIAVCKFKMLSCQ 99
>sp|Q8WUU8|TM174_HUMAN Transmembrane protein 174 OS=Homo sapiens
GN=TMEM174 PE=2 SV=1
Length = 243
Score = 31.2 bits (69), Expect = 3.0
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = -3
Query: 190 IAMGLMALAFH---WY-FVAADFYRW---FGTFLFATGLSFISIHICRFSLLTCR 47
I +GL+ + F W + + W G L + G++FI I +C+F +L+C+
Sbjct: 45 IFLGLVGITFTVMGWIKYQGVSHFEWTQLLGPVLLSVGVTFILIAVCKFKMLSCQ 99
>sp|P48558|YN45_YEAST Uncharacterized vacuolar membrane protein
YNL305C OS=Saccharomyces cerevisiae GN=YNL305C PE=1 SV=1
Length = 297
Score = 30.8 bits (68), Expect = 4.0
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = -3
Query: 199 WDVIAMGLMALAFHWYFVAADF---YRWFGTFLFATGL 95
W +I MGL AL F W ++ F Y W G LF L
Sbjct: 215 WIMIGMGLTALLFGWNTHSSKFNLLYGWLGAILFTAYL 252
>sp|Q9YEA0|VATI_AERPE V-type ATP synthase subunit I OS=Aeropyrum
pernix GN=atpI PE=3 SV=2
Length = 685
Score = 30.4 bits (67), Expect = 5.2
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 280 LIVFLARGNCFADTVDGLVAVSEDRIGWDVIAM-GLMALAFHWYFVAADFYRWFGTFLFA 104
L V + +G AD V L+ V + V AM GL+A A + FY WF F
Sbjct: 610 LTVMIMQGGILADVVGALLYVGGNLA---VAAMEGLLAFA---HASRLHFYEWFSKFYSG 663
Query: 103 TGLSFISIHI 74
TG+ + I +
Sbjct: 664 TGVPYTPIKV 673
>sp|P0C656|MED12_CAEBR Mediator of RNA polymerase II transcription
subunit 12 OS=Caenorhabditis briggsae GN=dpy-22 PE=3 SV=1
Length = 3941
Score = 30.4 bits (67), Expect = 5.2
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Frame = +2
Query: 8 GTPYGTSNNGKQTSTCQQGE-----PTYVDADERQTSGKQE----SAKPSIKIGSNKIPM 160
G YG +Q+ QQG+ P + +++ Q+ A+P ++IG K+ M
Sbjct: 3139 GQQYGNQPQQQQSQQAQQGQYPQQYPQQLSQNQQMNQQNQQRNPFGAQPEMQIGGPKVLM 3198
Query: 161 ESQGHKAHS 187
+++ +AH+
Sbjct: 3199 QAKPDEAHA 3207
>sp|O74477|MCA1_SCHPO Metacaspase-1 OS=Schizosaccharomyces pombe
GN=pca1 PE=2 SV=1
Length = 425
Score = 30.4 bits (67), Expect = 5.2
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Frame = +2
Query: 17 YGTSNNGKQTSTCQQGEPTYVDADERQTSGKQESAKPSIKIGSNKIPMESQGH------K 178
Y +N + +T Q +P + S +P SN+IPME+ GH
Sbjct: 24 YSPNNGSQSNNTVHQYQPPRMPPP---------STRPQTDGNSNQIPMENVGHISLSSAN 74
Query: 179 AHSYYIPAN---SIFRNSYESINSVGKAIASCQ 268
+H+Y P+ + NSY + N G + + Q
Sbjct: 75 SHAYAPPSGPPPNTGANSYGNPNYSGPQLPNTQ 107
>sp|P24278|ZBT25_HUMAN Zinc finger and BTB domain-containing protein
25 OS=Homo sapiens GN=ZBTB25 PE=1 SV=2
Length = 435
Score = 30.0 bits (66), Expect = 6.8
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Frame = +3
Query: 198 QPILSSETATSPSTVSAKQLPLAKKTIKQRVVELHLLLAKKAGNLDGECQ*ASCSFP--- 368
QP ++ T P +S Q+ L K + + + ++K C FP
Sbjct: 308 QPDHTNRGTTEPLQIS--QVSLISKDTEPVELNCNFSFSRKRKM---SCTICGHKFPRKS 362
Query: 369 SLAQH*FFHALTEYA*NRATLIGQALAQFFQPMHATYSE 485
L +H + H Y NR G ALAQ FQP ++S+
Sbjct: 363 QLLEHMYTHKGKSYRYNRCQRFGNALAQRFQPYCDSWSD 401
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A6M054 |
| Definition |
tr|A6M054|A6M054_CLOB8 Glycosyl hydrolase family 32, N terminal domain protein OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) |
| Align length |
96 |
| Score (bit) |
36.2 |
| E-value |
1.0 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917216|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_G05.
(519 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A6M054|A6M054_CLOB8 Glycosyl hydrolase family 32, N terminal ... 36 1.0
tr|B7FLD8|B7FLD8_MEDTR Putative uncharacterized protein (Fragmen... 35 2.9
tr|B2W412|B2W412_PYRTR ISWI chromatin-remodeling complex ATPase ... 35 2.9
tr|A0NS50|A0NS50_9RHOB Methyl-accepting chemotaxis receptor/sens... 34 3.8
tr|B4QAY6|B4QAY6_DROSI GD11793 OS=Drosophila simulans GN=GD11793... 34 3.8
tr|B6A488|B6A488_RHILW OmpA/MotB domain protein OS=Rhizobium leg... 33 6.5
tr|B4AMF4|B4AMF4_BACPU Membrane protein, putative OS=Bacillus pu... 33 8.5
tr|B4I8S7|B4I8S7_DROSE GM15514 OS=Drosophila sechellia GN=GM1551... 33 8.5
>tr|A6M054|A6M054_CLOB8 Glycosyl hydrolase family 32, N terminal
domain protein OS=Clostridium beijerinckii (strain ATCC
51743 / NCIMB 8052) GN=Cbei_3870 PE=3 SV=1
Length = 1496
Score = 36.2 bits (82), Expect = 1.0
Identities = 25/96 (26%), Positives = 44/96 (45%)
Frame = +2
Query: 23 TSNNGKQTSTCQQGEPTYVDADERQTSGKQESAKPSIKIGSNKIPMESQGHKAHSYYIPA 202
TS TST G+ ++ + T +E+ +I I K +G A Y + +
Sbjct: 227 TSEQSNSTSTTSSGK-SHHSSGSSSTKVNKEALINAITIAKTKYEAAVEGTDAGQYSVGS 285
Query: 203 NSIFRNSYESINSVGKAIASCQKDN*TESSRVASAT 310
+IF+ + ++ +V S QKD + + +ASAT
Sbjct: 286 KAIFKAAIDAAQAVSDNTGSTQKDIDSAVTALASAT 321
>tr|B7FLD8|B7FLD8_MEDTR Putative uncharacterized protein (Fragment)
OS=Medicago truncatula PE=2 SV=1
Length = 464
Score = 34.7 bits (78), Expect = 2.9
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = +2
Query: 104 GKQESAKP-----SIKIGSNKIPMESQGHKAHSYYIPANSIF-RNSYESINSVGKAIASC 265
G S +P SI I + + +G S+Y P N +F ++++ S++ +G S
Sbjct: 260 GDHNSPRPQFYFDSINIFFHNVLQPPEGEVGESFYDPVNDVFGKDAWRSVHELGYINESS 319
Query: 266 QKDN*TESSRVASATRK-ESRKPRRRMPI 349
K+ +S A ++ SR+P RM +
Sbjct: 320 SKNKEPSTSSTVDAIKEVRSRRPMSRMEV 348
>tr|B2W412|B2W412_PYRTR ISWI chromatin-remodeling complex ATPase
ISW2 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
GN=PTRG_05212 PE=4 SV=1
Length = 916
Score = 34.7 bits (78), Expect = 2.9
Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Frame = +2
Query: 5 KGTPYGTSNNGKQTSTCQQGEPTYVDA------DERQTSGKQESAKPSIKIGSNKIPMES 166
KG N ++T+ Q T A DE +T+ K+ +P + ++
Sbjct: 112 KGQTTKREKNAEKTAAESQRRATRGSAASAPKTDEPETTPKRGRGRPKKQDNKGNAKLKK 171
Query: 167 QGHKAHSYYIPANSIFRNSYESINSVGKAIASCQKDN*TESSRVASATRKESRKPR 334
QG SY+ A+ + ++++ K A KDN ++S + K +R+P+
Sbjct: 172 QGSDISSYFSKADLEKKTDHKNVGDALKEAAEEDKDN-VKTSDIGMTDLKSARQPK 226
>tr|A0NS50|A0NS50_9RHOB Methyl-accepting chemotaxis receptor/sensory
transducer OS=Labrenzia aggregata IAM 12614
GN=SIAM614_04435 PE=4 SV=1
Length = 821
Score = 34.3 bits (77), Expect = 3.8
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +3
Query: 165 AKAIRPIAITSQPILSSETATSPSTVS-AKQLPLAKKTIKQRVVELHLLLAKKAGNLDGE 341
A I +T + +S+E + S + A QL A +K VV++H+L + +GN+DGE
Sbjct: 161 ATNISDAVLTEEKRISAEAFAANSRLDDANQLQRAVFELKDEVVQVHMLYLQGSGNIDGE 220
>tr|B4QAY6|B4QAY6_DROSI GD11793 OS=Drosophila simulans GN=GD11793
PE=4 SV=1
Length = 169
Score = 34.3 bits (77), Expect = 3.8
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Frame = +2
Query: 11 TPYGTSNNGKQTSTCQQGEPTYVDADERQTSGKQESAKPSIKIGSNKIPMESQGHKAHSY 190
T YG + + +S+ T + S S+ PS S+ P S + S
Sbjct: 17 TAYGGTTSSDSSSSDSSSSTTPTSSSSSTPSSSSSSSTPSSS-SSSSTPSSSSSTPSSSS 75
Query: 191 YIPANSIFRNSYESINSVGKAIA--SCQKDN*TESSRVASATRKESRKPRRRM 343
P++S + S +S S DN TESS +S+ +E + RRR+
Sbjct: 76 STPSSSSSTSPTSSTSSTTATTKAPSTSSDNTTESSSSSSSDSEEVDRLRRRL 128
>tr|B6A488|B6A488_RHILW OmpA/MotB domain protein OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304)
GN=Rleg2_6051 PE=3 SV=1
Length = 642
Score = 33.5 bits (75), Expect = 6.5
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = +3
Query: 36 ESRHLHVNKENRHMWMLMKDKPVANKKVPNHR*KSAATKYQWKAKAIRPIAITSQPILSS 215
E+R L ++ + + D P A V +A + A P+A +P+
Sbjct: 162 EARSLGTKISSKTLMLTTVDSPAALPPVAAPPVAAAPAVKPVEQAAKPPVAPKQKPVTKQ 221
Query: 216 ETATSPSTVSAKQLPLAKKTIKQRVVE 296
E A P TV K P+A K + + VE
Sbjct: 222 EVAKKPETVVEKPKPVAPKKVAPKPVE 248
>tr|B4AMF4|B4AMF4_BACPU Membrane protein, putative OS=Bacillus
pumilus ATCC 7061 GN=BAT_1336 PE=4 SV=1
Length = 415
Score = 33.1 bits (74), Expect = 8.5
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Frame = -1
Query: 354 MLIGIRRRGFLLSLRVADATLLLSV*LSFWQEAIALPTLLMDS*LFLKIELAGM**LW-- 181
M+ GIR G L LR++D ++ L+ + F + + LAG+ W
Sbjct: 159 MIFGIRVNGVLF-LRLSDISINLTEVVPF----------------LVAVSLAGIFHSWNW 201
Query: 180 --ALWPWLSIGILLLPIFIDGLA----------LSCLPLVCLSSAS 79
L WL +GI+ LP+ + + CL ++C+SSAS
Sbjct: 202 ENGLKAWLGVGIMALPVILISAIGFLPATVICFVMCLTMMCVSSAS 247
>tr|B4I8S7|B4I8S7_DROSE GM15514 OS=Drosophila sechellia GN=GM15514
PE=4 SV=1
Length = 169
Score = 33.1 bits (74), Expect = 8.5
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Frame = +2
Query: 11 TPYGTSNNGKQTSTCQQGEPTYVDADERQTSGKQESAKPSIKIGSNKIPMESQGHKAHSY 190
T YG + TS+ T + S S+ P+ S+ P S + S
Sbjct: 17 TAYGGTTTTGSTSSDSSSSTTPTSSSSSTPSSSSSSSTPNSS-SSSSTPSSSSSTPSSSS 75
Query: 191 YIPANSIFRNSYESINSVGKAIA--SCQKDN*TESSRVASATRKESRKPRRRM 343
P++S + S +S S DN TESS +S+ +E + RRR+
Sbjct: 76 STPSSSSSTSPTSSTSSTTATTKAPSTSSDNTTESSSSSSSDSEEVDRLRRRL 128
|