BP917222
Clone id YMU001_000097_H02
Library
Length 141
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGGCACTTGGTGCATGCTCCTCATCCTCTGAATGCTCAGAATACTTGTCACTTTGCAAAA
GATCATCTCGGTACTCACCTTTATCATTATCTGTAGGGTCTACACTTCCTTTATTGTAAG
TGATACCATCAGCTTCTCTAG
■■Homology search results ■■ -
sp_hit_id Q8H0T4
Definition sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana
Align length 36
Score (bit) 30.4
E-value 2.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917222|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_H02.
(141 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabido... 30 2.8
sp|Q5H1X2|GCSH_XANOR Glycine cleavage system H protein OS=Xantho... 30 3.7
sp|Q2P4S4|GCSH_XANOM Glycine cleavage system H protein OS=Xantho... 30 3.7
sp|Q54FJ7|Y9094_DICDI Uncharacterized protein DDB_G0290803 OS=Di... 29 8.2
sp|Q3BQN7|GCSH_XANC5 Glycine cleavage system H protein OS=Xantho... 29 8.2
sp|Q8PI38|GCSH_XANAC Glycine cleavage system H protein OS=Xantho... 29 8.2

>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis
thaliana GN=UPL2 PE=1 SV=2
Length = 3658

Score = 30.4 bits (67), Expect = 2.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3

Query: 127 GITYNKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDE 20
G YN VD + D+ EY DD++ D E EDE
Sbjct: 2166 GDEYNDDMVDEDEEDEDEYNDDMVDED---EDDEDE 2198



Score = 30.4 bits (67), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3

Query: 136 EADGITYNKGSVDPTDNDKGEYRDDLLQSDKYSEH 32
E D YN VD ++D+ EY DD++ D+ H
Sbjct: 2178 EEDEDEYNDDMVDEDEDDEDEYNDDMVDEDEDDFH 2212


>sp|Q5H1X2|GCSH_XANOR Glycine cleavage system H protein
OS=Xanthomonas oryzae pv. oryzae GN=gcvH PE=3 SV=1
Length = 131

Score = 30.0 bits (66), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3

Query: 118 YNKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDEEH 14
Y +G + + D E +DLL D Y+E ED+EH
Sbjct: 97 YGEGWIFVVEIDDKEQLNDLLDPDDYAELLEDDEH 131


>sp|Q2P4S4|GCSH_XANOM Glycine cleavage system H protein
OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
GN=gcvH PE=3 SV=1
Length = 131

Score = 30.0 bits (66), Expect = 3.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3

Query: 118 YNKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDEEH 14
Y +G + + D E +DLL D Y+E ED+EH
Sbjct: 97 YGEGWIFVVEIDDKEQLNDLLDPDDYAELLEDDEH 131


>sp|Q54FJ7|Y9094_DICDI Uncharacterized protein DDB_G0290803
OS=Dictyostelium discoideum GN=DDB_G0290803 PE=4 SV=1
Length = 367

Score = 28.9 bits (63), Expect = 8.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -3

Query: 115 NKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDEEH 14
N +V +ND+ + D+ ++D+Y E+ +DEE+
Sbjct: 92 NDENVQNEENDENQENDENQENDEYEENYDDEEN 125


>sp|Q3BQN7|GCSH_XANC5 Glycine cleavage system H protein
OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)
GN=gcvH PE=3 SV=1
Length = 131

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3

Query: 118 YNKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDEEH 14
Y +G + + D E +DLL D Y+E ED++H
Sbjct: 97 YGEGWIFVVEIDDKEQLNDLLDPDDYAELLEDDDH 131


>sp|Q8PI38|GCSH_XANAC Glycine cleavage system H protein
OS=Xanthomonas axonopodis pv. citri GN=gcvH PE=3 SV=1
Length = 131

Score = 28.9 bits (63), Expect = 8.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3

Query: 118 YNKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDEEH 14
Y +G + + D E +DLL D Y+E ED++H
Sbjct: 97 YGEGWIFVVEIDDKEQLNDLLDPDDYAELLEDDDH 131


tr_hit_id B1ZDS3
Definition tr|B1ZDS3|B1ZDS3_METPB Alpha amylase catalytic region OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
Align length 40
Score (bit) 33.5
E-value 5.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917222|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_H02.
(141 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B1ZDS3|B1ZDS3_METPB Alpha amylase catalytic region OS=Methylo... 33 5.3
tr|A9W697|A9W697_METEP Alpha amylase catalytic region OS=Methylo... 33 7.0

>tr|B1ZDS3|B1ZDS3_METPB Alpha amylase catalytic region
OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB
13946 / BJ001) GN=Mpop_2834 PE=4 SV=1
Length = 1124

Score = 33.5 bits (75), Expect = 5.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3

Query: 139 READGITYNKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDE 20
R+ADG + ++DP D K DL++ D +SEH+ E
Sbjct: 141 RDADGKPVSPAAIDPDDPSKRTVWGDLIELDYHSEHARGE 180


>tr|A9W697|A9W697_METEP Alpha amylase catalytic region
OS=Methylobacterium extorquens (strain PA1) GN=Mext_2712
PE=4 SV=1
Length = 1124

Score = 33.1 bits (74), Expect = 7.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3

Query: 139 READGITYNKGSVDPTDNDKGEYRDDLLQSDKYSEHSEDE 20
R+ADG + ++DP D K DL++ D +SEH+ E
Sbjct: 141 RDADGKPVSPAAIDPDDPTKRTVWGDLIELDYHSEHARGE 180