NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917236
Clone id YMU001_000098_A09
Library
Length 291
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATCTTCTAACTCCAGCTCCTTGAGGTTGTAAACAGCTCTTTGACATTGGAACTGCAGTTT
GATCTGCTCTAAGTGATTGTCAATGTCAAATGATCTAACTATCTCTGCTCCTTCTTTTAT
GGCTGCTTGTGTGAGTGGTGTTCTTGAACCATGCTGGTCCTTTCGGCTCTGATCCGATTG
CTCATCCACCTCAGCTTGCTTTTACTTTTTTTTCAAATCCTCTAATGCATCAAAGGTTGT
GGCAGGCTTTGTCTGTGATTCTGTTTGTTGATCCATTTGCTATTCCGTCTG
■■Homology search results ■■ -
sp_hit_id Q6C880
Definition sp|Q6C880|SEC22_YARLI Protein transport protein SEC22 OS=Yarrowia lipolytica
Align length 60
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917236|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_A09.
         (291 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6C880|SEC22_YARLI Protein transport protein SEC22 OS=Yarrowi...    31   1.7  
sp|P13393|TBP_YEAST TATA-box-binding protein OS=Saccharomyces ce...    30   3.7  
sp|Q9A478|Y2965_CAUCR UPF0339 protein CC_2965 OS=Caulobacter cre...    29   8.2  
sp|Q04AM0|FTHS_LACDB Formate--tetrahydrofolate ligase OS=Lactoba...    29   8.2  
sp|Q1GA94|FTHS_LACDA Formate--tetrahydrofolate ligase OS=Lactoba...    29   8.2  
sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain...    29   8.2  

>sp|Q6C880|SEC22_YARLI Protein transport protein SEC22 OS=Yarrowia
           lipolytica GN=SEC22 PE=3 SV=1
          Length = 213

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -1

Query: 183 EQSDQSRKDQHGSRTPLTQAAIKEGAEIVRSFDIDNHLEQIKLQFQCQRAVYNLKELELE 4
           ++ D+  +  HG      Q A+KEG    +  + D  +++ K  +Q  RA +NL +L  E
Sbjct: 86  DELDREFQKSHG------QEALKEGVRPYKFVEFDTFMQKTKRVYQDTRATHNLDKLNTE 139


>sp|P13393|TBP_YEAST TATA-box-binding protein OS=Saccharomyces
           cerevisiae GN=SPT15 PE=1 SV=3
          Length = 240

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 273 DQQTESQTKPATTFDALEDLKKK*KQAEVD 184
           + Q    TKPATTF + ED+K+   ++E D
Sbjct: 27  ENQNRDGTKPATTFQSEEDIKRAAPESEKD 56


>sp|Q9A478|Y2965_CAUCR UPF0339 protein CC_2965 OS=Caulobacter
           crescentus GN=CC_2965 PE=3 SV=1
          Length = 59

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 264 TESQTKPATTFDALEDLKKK*KQAEVDEQSD 172
           TE     A+  +A+E +KK   +AE+D+Q+D
Sbjct: 29  TEGYASKASAKNAIESIKKNGPEAEIDDQTD 59


>sp|Q04AM0|FTHS_LACDB Formate--tetrahydrofolate ligase
           OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
           ATCC BAA-365) GN=fhs PE=3 SV=1
          Length = 559

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 192 EVDEQSDQSRKDQHGSRTPLTQAAIKEGAEIVRSFDIDNHLEQIKLQFQCQRAVYNLKEL 13
           E+    D+  K    +   + + A K   EI RS+D+D+ LE  K++   +R +Y+  ++
Sbjct: 407 EIVTAHDEGSKGAKAAAEKIVELADKSDYEIKRSYDLDDDLE-TKIEKVAKR-IYHAADV 464

Query: 12  ELED 1
           E  D
Sbjct: 465 EYTD 468


>sp|Q1GA94|FTHS_LACDA Formate--tetrahydrofolate ligase
           OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
           ATCC 11842 / DSM 20081) GN=fhs PE=3 SV=2
          Length = 559

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -1

Query: 192 EVDEQSDQSRKDQHGSRTPLTQAAIKEGAEIVRSFDIDNHLEQIKLQFQCQRAVYNLKEL 13
           E+    D+  K    +   + + A K   EI RS+D+D+ LE  K++   +R +Y+  ++
Sbjct: 407 EIVTAHDEGSKGAKAAAEKIVELADKSDYEIKRSYDLDDDLE-TKIEKVAKR-IYHAADV 464

Query: 12  ELED 1
           E  D
Sbjct: 465 EYTD 468


>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain
           protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1
          Length = 2130

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 273 DQQTESQTKPATTFDALEDLKKK*KQAEVDEQSDQSRKDQHGSRTPL 133
           D Q+ES +   +  D  ED     +  E D+  D+S  D  G +TPL
Sbjct: 577 DSQSESDSNSESDTDGSED-----EDDEDDKDQDESDTDTEGEKTPL 618
tr_hit_id A0DTB8
Definition tr|A0DTB8|A0DTB8_PARTE Chromosome undetermined scaffold_62, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 98
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917236|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_A09.
         (291 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0DTB8|A0DTB8_PARTE Chromosome undetermined scaffold_62, whol...    37   0.49 
tr|A9SDX1|A9SDX1_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.84 
tr|Q29IZ1|Q29IZ1_DROPS GA10986 OS=Drosophila pseudoobscura pseud...    36   0.84 
tr|B4GTN2|B4GTN2_DROPE GL14242 OS=Drosophila persimilis GN=GL142...    36   1.1  
tr|B4NFC4|B4NFC4_DROWI GK22552 OS=Drosophila willistoni GN=GK225...    33   7.1  
tr|B6BIP0|B6BIP0_9PROT Dihydropteroate synthase OS=Campylobacter...    33   9.2  

>tr|A0DTB8|A0DTB8_PARTE Chromosome undetermined scaffold_62, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00019978001 PE=4 SV=1
          Length = 1535

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
 Frame = -1

Query: 273 DQQTESQTKPATTFDALEDLKK-------K*KQAEVDEQSDQSRKDQHGSRTPLTQAAIK 115
           +Q  +      T    +E+ KK       K  Q E  +++ Q +  +     PL +   K
Sbjct: 201 EQVADQNVGKTTLIKKIEEFKKMKQSKDTKETQQETQQENQQEQTIKSVPENPLRKLLNK 260

Query: 114 EGAEIVRSFDIDNHLEQIKLQFQCQRAVYNLKELELED 1
           + AE  +  +++  +EQ KLQ Q Q A   LK+++ ED
Sbjct: 261 K-AEERKEQELNQQIEQNKLQIQTQEAEIELKQIDAED 297


>tr|A9SDX1|A9SDX1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164436 PE=4 SV=1
          Length = 801

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = -1

Query: 291 QTE*QMDQQTESQTKPATTFDALEDLKKK*KQAEVDEQSDQSRKDQHGSRTPLTQAAIKE 112
           Q+E   D+  +++ KPATT        K+ + AEV  QS++ R+D+   +    Q  I  
Sbjct: 567 QSEDMEDESVDTKQKPATT--GRVSTTKRSRAAEVHNQSERRRRDRINEKMRALQELIPN 624

Query: 111 GAEIVRSFDIDNHLEQIK-LQFQCQ 40
             +  ++  +D  +E +K LQ Q Q
Sbjct: 625 SNKTDKASMLDEAIEYLKMLQLQLQ 649


>tr|Q29IZ1|Q29IZ1_DROPS GA10986 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA10986 PE=4 SV=2
          Length = 432

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -1

Query: 291 QTE*QMDQQTESQTKPATTFDALEDLKKK*KQAEVDEQSDQSRKDQHGSRTPLTQA-AIK 115
           Q + Q  QQT+     ATT    +  K K K  E  ++  QS++    ++ P+    A  
Sbjct: 47  QQQQQQQQQTQQTPAVATTTSGKKKCKNKKKTIEKQQEQQQSQQ----NKQPVANGHAGH 102

Query: 114 EGAEIVRSFDIDNHLEQIKLQFQ 46
           E AE+V   D D  L+Q +LQFQ
Sbjct: 103 EAAEVVS--DADPELQQNELQFQ 123


>tr|B4GTN2|B4GTN2_DROPE GL14242 OS=Drosophila persimilis GN=GL14242
           PE=4 SV=1
          Length = 391

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -1

Query: 291 QTE*QMDQQTESQTKPATTFDALEDLKKK*KQAEVDEQSDQSRKDQHGSRTPLTQA-AIK 115
           Q + Q  QQT+     ATT    +  K K K  E  ++  QS++    ++ P+    A  
Sbjct: 6   QQQQQQQQQTQQTPAVATTTSGKKKCKNKKKTIEKQQEQQQSQQ----NKQPVENGHAGH 61

Query: 114 EGAEIVRSFDIDNHLEQIKLQFQ 46
           E AE+V   D D  L+Q +LQFQ
Sbjct: 62  EAAEVVS--DADPELQQNELQFQ 82


>tr|B4NFC4|B4NFC4_DROWI GK22552 OS=Drosophila willistoni GN=GK22552
           PE=4 SV=1
          Length = 307

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
 Frame = -1

Query: 291 QTE*QMDQQTESQTKPATTFDALEDLKKK*KQAEVDE--QSDQSRKDQH------GSRTP 136
           Q E +M ++ + +  PA   +  E  KKK KQ E +E  Q +Q +++Q       G +TP
Sbjct: 178 QQEQEMLEKLQGKQTPAVEAELKETPKKKKKQKEKNEDLQEEQEQQEQEMLEKLQGKQTP 237

Query: 135 LTQAAIKE 112
             +A +KE
Sbjct: 238 AVEAKLKE 245


>tr|B6BIP0|B6BIP0_9PROT Dihydropteroate synthase
           OS=Campylobacterales bacterium GD 1 GN=folP PE=4 SV=1
          Length = 380

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 201 KQAEVDEQSDQSRKDQHGSRTPLTQAAIKEGAEIVRSFDIDNHLEQIKLQ 52
           +++ +D+ S    KD+      L   AI+ GA I+R  D+  H++ IK++
Sbjct: 325 RKSMIDQISKSLPKDRLAGTLALHLEAIRNGASIIRVHDVAEHIQAIKIK 374