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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917240
Clone id YMU001_000098_B02
Library
Length 569
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGATATACCTGTAGGTACTCAAAGACTAGAAACTACATACTTCATATTTATTGNGAATG
TCCCCGGAGTTTATCTCAAAAAGAATAGAGCAATTACAAAGGACCTCTTCAGTTGTGCAA
AAAACTTCCTGAAGTCCAACTCTTAGCATACAGAGTACCCCACAAACCTATTCAATTGCC
TCATGTCCTTCGGTGAGAACTTTCCACCTCATGAATCATAAGAAAATAACAGGGTTGAGG
TAGGAATAGCCAGACATTCATAAACCCACCTATGCGCTGACCCTGTTATCTAAAGCTGAA
GTGCAGGATTCATATCAAAGAGGAAACTCATTTTCCTGCCTCTGCACGCTTTTTGAAAGA
AAGCAAAACTCCATTCTGGCATACCATGGAATCTTACCAAGATGCCCCTATTCTATTGGC
ACCCAACGCCTATACATTGACTCATCATGTGCATAGTGTCAAAACCTTATGTCATCTTGT
TTTGAATCTGCCGGTGAACGTGGACAAGGTACTCCACATACGAAAGACCCAAAGCATTCT
TGTCCTCCACAAGAAGTGAAAAGAAAAGA
■■Homology search results ■■ -
sp_hit_id Q9M291
Definition sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana
Align length 32
Score (bit) 42.0
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917240|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_B02.
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF O...    42   0.002
sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewane...    33   0.99 
sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo s...    32   1.7  
sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo s...    32   2.2  
sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewane...    32   2.2  
sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus mu...    31   3.8  
sp|Q0HR40|MUTL_SHESR DNA mismatch repair protein mutL OS=Shewane...    31   4.9  
sp|Q0HMP1|MUTL_SHESM DNA mismatch repair protein mutL OS=Shewane...    31   4.9  
sp|Q8EJ70|MUTL_SHEON DNA mismatch repair protein mutL OS=Shewane...    31   4.9  
sp|A6WSV4|MUTL_SHEB8 DNA mismatch repair protein mutL OS=Shewane...    31   4.9  
sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculu...    30   6.4  
sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos ta...    30   8.4  
sp|A3D022|MUTL_SHEB5 DNA mismatch repair protein mutL OS=Shewane...    30   8.4  
sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapien...    30   8.4  

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
            OS=Arabidopsis thaliana GN=CEF PE=1 SV=2
          Length = 1097

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = -2

Query: 568  LFFSLLVEDKNALGLSYVEYLVHVHRQIQNKM 473
            LF S +VED+ + G SYV++LV VHRQIQ+K+
Sbjct: 1065 LFQSYMVEDRGSGGASYVDFLVSVHRQIQHKL 1096


>sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain ANA-3) GN=mutL PE=3 SV=1
          Length = 648

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 335 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVKTLCHLVLNLPVNVDKVL 514
           PA  RFLK  KT F H  E  +   ++     +TLTH+   V+  C   +N P  + ++ 
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKIVRN-CRPAMNEPQYLQRLT 213

Query: 515 HIRKTQ 532
            +   Q
Sbjct: 214 QVAGRQ 219


>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo
            sapiens GN=SEC24B PE=1 SV=2
          Length = 1268

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 565  FFSLLVEDKNALGLSYVEYLVHVHRQI 485
            FF  L+ED+     SY E+L+HV +QI
Sbjct: 1240 FFQHLIEDRTEAAFSYYEFLLHVQQQI 1266


>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo
            sapiens GN=SEC24C PE=1 SV=2
          Length = 1094

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -2

Query: 568  LFFSLLVEDKNALG-LSYVEYLVHVHRQIQNKMT 470
            LF   LVEDK+  G  SYV++L H+H++I+  ++
Sbjct: 1061 LFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094


>sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=mutL PE=3 SV=1
          Length = 619

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 463
           PA  RFLK  KT F H  E  +   I+ +   +TLTH+   V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIAIVRSDIHFTLTHNAKLVR 197


>sp|Q3U2P1|SC24A_MOUSE Protein transport protein Sec24A OS=Mus
            musculus GN=Sec24a PE=1 SV=1
          Length = 1090

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 565  FFSLLVEDKNALGLSYVEYLVHVHRQI 485
            F   LVED+    LSY E+L+H+ +Q+
Sbjct: 1062 FLQSLVEDRTESALSYYEFLLHIQQQV 1088


>sp|Q0HR40|MUTL_SHESR DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain MR-7) GN=mutL PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 463
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|Q0HMP1|MUTL_SHESM DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain MR-4) GN=mutL PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 463
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|Q8EJ70|MUTL_SHEON DNA mismatch repair protein mutL OS=Shewanella
           oneidensis GN=mutL PE=3 SV=1
          Length = 631

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 463
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|A6WSV4|MUTL_SHEB8 DNA mismatch repair protein mutL OS=Shewanella
           baltica (strain OS185) GN=mutL PE=3 SV=1
          Length = 630

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 335 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 463
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 156 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 198
tr_hit_id A9S9N4
Definition tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 33
Score (bit) 57.0
E-value 7.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917240|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_B02.
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella paten...    57   7e-07
tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome...    57   9e-07
tr|A9S9P0|A9S9P0_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative, unclas...    52   2e-05
tr|Q0INL9|Q0INL9_ORYSJ Os12g0430000 protein OS=Oryza sativa subs...    52   2e-05
tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|A3CGV8|A3CGV8_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,...    49   1e-04
tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza ...    49   1e-04
tr|B8BKH9|B8BKH9_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|A3CBA1|A3CBA1_ORYSJ Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|Q27GK4|Q27GK4_ARATH Uncharacterized protein At3g44340.1 OS=Ar...    42   0.024
tr|A4S4Y9|A4S4Y9_OSTLU Predicted protein OS=Ostreococcus lucimar...    40   0.069
tr|Q00YP1|Q00YP1_OSTTA S24C_ARATH Protein transport protein Sec2...    40   0.090
tr|A7F0N1|A7F0N1_SCLS1 Putative uncharacterized protein OS=Scler...    39   0.20 
tr|A6SPR1|A6SPR1_BOTFB SEC24 related gene family OS=Botryotinia ...    39   0.20 
tr|Q5B8Q0|Q5B8Q0_EMENI Putative uncharacterized protein OS=Emeri...    39   0.26 
tr|A8Q267|A8Q267_MALGO Putative uncharacterized protein OS=Malas...    39   0.26 
tr|A6R736|A6R736_AJECN Putative uncharacterized protein OS=Ajell...    39   0.26 
tr|Q4PBY5|Q4PBY5_USTMA Putative uncharacterized protein OS=Ustil...    38   0.34 
tr|Q2UQE8|Q2UQE8_ASPOR Vesicle coat complex COPII OS=Aspergillus...    38   0.34 
tr|Q0CPA0|Q0CPA0_ASPTN Putative uncharacterized protein OS=Asper...    38   0.34 
tr|B8MZM3|B8MZM3_ASPFL Sec23/Sec24 family protein OS=Aspergillus...    38   0.34 
tr|B8M772|B8M772_9EURO Sec23/Sec24 family protein OS=Talaromyces...    38   0.34 
tr|Q4WXJ2|Q4WXJ2_ASPFU Sec23/Sec24 family protein OS=Aspergillus...    37   0.77 
tr|Q1E694|Q1E694_COCIM Putative uncharacterized protein OS=Cocci...    37   0.77 
tr|B6GYD7|B6GYD7_PENCH Pc12g15830 protein OS=Penicillium chrysog...    37   0.77 
tr|B0XY32|B0XY32_ASPFC Sec23/Sec24 family protein OS=Aspergillus...    37   0.77 
tr|A4R860|A4R860_MAGGR Putative uncharacterized protein OS=Magna...    37   0.77 

>tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_76562 PE=4 SV=1
          Length = 1007

 Score = 57.0 bits (136), Expect = 7e-07
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = -2

Query: 568  LFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
            LF++ LVEDK+ALGLSYVEYLV  HRQIQN+MT
Sbjct: 975  LFYNYLVEDKSALGLSYVEYLVQTHRQIQNRMT 1007


>tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027411001
           PE=4 SV=1
          Length = 77

 Score = 56.6 bits (135), Expect = 9e-07
 Identities = 25/33 (75%), Positives = 30/33 (90%)
 Frame = -2

Query: 568 LFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
           LFFS +VEDK A+GLSYVE+LVH+HRQIQ KM+
Sbjct: 45  LFFSFMVEDKTAIGLSYVEFLVHIHRQIQIKMS 77


>tr|A9S9P0|A9S9P0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_126303 PE=4 SV=1
          Length = 1044

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = -2

Query: 568  LFFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
            LF + LVEDK ALGLSYVEYLV  HRQIQN+MT
Sbjct: 1012 LFQNYLVEDKTALGLSYVEYLVQTHRQIQNRMT 1044


>tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative,
            unclassified, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g24250 PE=4 SV=1
          Length = 1083

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = -2

Query: 565  FFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
            F SLLVEDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 1052 FRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1083


>tr|Q0INL9|Q0INL9_ORYSJ Os12g0430000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0430000 PE=4 SV=1
          Length = 867

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = -2

Query: 565 FFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
           F SLLVEDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 836 FRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 867


>tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_38153 PE=4 SV=1
          Length = 1094

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = -2

Query: 565  FFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
            F SLLVEDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 1063 FRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1094


>tr|A3CGV8|A3CGV8_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_034530 PE=4 SV=1
          Length = 1056

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = -2

Query: 565  FFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
            F SLLVEDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 1025 FRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1056


>tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36108 PE=4 SV=1
          Length = 784

 Score = 50.4 bits (119), Expect = 7e-05
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = -2

Query: 565 FFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
           F S L+EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 753 FRSFLIEDKAPGGLSYVEFLVHVHRQIQSKMT 784


>tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,
           putative, expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g29200 PE=4 SV=1
          Length = 810

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = -2

Query: 565 FFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
           F S L EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 779 FRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 810


>tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os11g0482100 PE=4 SV=1
          Length = 577

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = -2

Query: 565 FFSLLVEDKNALGLSYVEYLVHVHRQIQNKMT 470
           F S L EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 546 FRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 577