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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917244
Clone id YMU001_000098_B07
Library
Length 372
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGGTTGGCACGAGTGGTTCTTCCTCTCCTTGCGCTATCTCCCGCTGACTGCATGCCATC
CTCCTCCTTCCTTTCTCCCCCTTCACACACAATAATCCTCATTTCCCTTATTGGGCGGGC
ATTGAGCCTATCTCCTTGGGTGGCCCATTACTATTGGGCCCTTGGGTACCATAGTCCTTG
GGTGGGTGGCTCTCAGAGGCCAGCACCTTTGACATCCACGTTGACCAAGGCATTGTTAAG
AAAAACATCTTCCTCTAGCAGTCCTTGACTAACAATATCATCGTGAATTTTGCTGCCATT
TCTGTGTCGTGGATAATGCCACAGGCCATCAACACGCAAGTATAAGTGATTGCATTTGCA
AAAACGCCTTCC
■■Homology search results ■■ -
sp_hit_id Q9JI03
Definition sp|Q9JI03|CO5A1_RAT Collagen alpha-1(V) chain OS=Rattus norvegicus
Align length 50
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917244|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_B07.
         (372 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JI03|CO5A1_RAT Collagen alpha-1(V) chain OS=Rattus norvegic...    30   2.9  
sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protei...    30   4.9  
sp|O88207|CO5A1_MOUSE Collagen alpha-1(V) chain OS=Mus musculus ...    29   6.4  
sp|Q60467|CO5A1_CRILO Collagen alpha-1(V) chain OS=Cricetulus lo...    29   6.4  
sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protei...    29   8.3  
sp|P20908|CO5A1_HUMAN Collagen alpha-1(V) chain OS=Homo sapiens ...    29   8.3  
sp|Q6UXH8|CCBE1_HUMAN Collagen and calcium-binding EGF domain-co...    29   8.3  

>sp|Q9JI03|CO5A1_RAT Collagen alpha-1(V) chain OS=Rattus norvegicus
            GN=Col5a1 PE=1 SV=1
          Length = 1840

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -2

Query: 212  SKVLASESHPPKDYGTQGPNSNGPPKEIGSMPAQ*GK*GLLCVKGEKGRR 63
            SK    E  PP   G QGP     P      P   G+ GL   KG++G R
Sbjct: 1171 SKGDKGEQGPPGPTGPQGPTGQPGPSGADGEPGPRGQQGLFGQKGDEGSR 1220


>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E88 PE=2 SV=1
          Length = 1028

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 347 TYTCVLMACGIIHDTEMAAKFTMILLVKDC*RKMF 243
           T+T +L  C   HD EM ++F  I++ K   + +F
Sbjct: 430 TFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLF 464


>sp|O88207|CO5A1_MOUSE Collagen alpha-1(V) chain OS=Mus musculus
            GN=Col5a1 PE=2 SV=2
          Length = 1838

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -2

Query: 212  SKVLASESHPPKDYGTQGPNSNGPPKEIGSMPAQ*GK*GLLCVKGEKGRR 63
            SK    E  PP   G QGP     P      P   G+ GL   KG++G R
Sbjct: 1169 SKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGSR 1218


>sp|Q60467|CO5A1_CRILO Collagen alpha-1(V) chain OS=Cricetulus
            longicaudatus GN=COL5A1 PE=2 SV=1
          Length = 1840

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -2

Query: 212  SKVLASESHPPKDYGTQGPNSNGPPKEIGSMPAQ*GK*GLLCVKGEKGRR 63
            SK    E  PP   G QGP     P      P   G+ GL   KG++G R
Sbjct: 1171 SKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGSR 1220


>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein
           At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
          Length = 606

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 303 RNGSKIHDDIVSQGLLEEDVFLNNALVNV 217
           R G +IH  +   GL E DVF+ N+L+N+
Sbjct: 149 REGKQIHGQVFKLGL-EADVFVQNSLINM 176


>sp|P20908|CO5A1_HUMAN Collagen alpha-1(V) chain OS=Homo sapiens
            GN=COL5A1 PE=1 SV=3
          Length = 1838

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/50 (36%), Positives = 21/50 (42%)
 Frame = -2

Query: 212  SKVLASESHPPKDYGTQGPNSNGPPKEIGSMPAQ*GK*GLLCVKGEKGRR 63
            SK    E  PP   G QGP     P      P   G+ GL   KG++G R
Sbjct: 1169 SKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPR 1218


>sp|Q6UXH8|CCBE1_HUMAN Collagen and calcium-binding EGF
           domain-containing protein 1 OS=Homo sapiens GN=CCBE1
           PE=2 SV=1
          Length = 406

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = -2

Query: 209 KVLASESH---PPKDYGTQGPNSNGPPKEIGSMPAQ*GK*GLLCVKGEKGRRRMACSQRE 39
           KVLAS ++   PP   G QGP  +  PK     P   G  G    +G  G    +     
Sbjct: 237 KVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSH 296

Query: 38  IAQGEEEPLVP 6
           I QG   P+ P
Sbjct: 297 IKQGRRGPVGP 307
tr_hit_id B7Q188
Definition tr|B7Q188|B7Q188_IXOSC Collagen alpha chain, type IV, putative (Fragment) OS=Ixodes scapularis
Align length 53
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917244|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_B07.
         (372 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7Q188|B7Q188_IXOSC Collagen alpha chain, type IV, putative (...    36   1.1  
tr|B6KIH9|B6KIH9_TOXGO Formin homology 2 domain-containing prote...    34   4.1  
tr|A8JA44|A8JA44_CHLRE Predicted protein OS=Chlamydomonas reinha...    33   7.1  

>tr|B7Q188|B7Q188_IXOSC Collagen alpha chain, type IV, putative
           (Fragment) OS=Ixodes scapularis GN=IscW_ISCW009593 PE=4
           SV=1
          Length = 1395

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -2

Query: 185 PPKDYGTQGPNSNGPPKEIGSMPAQ*GK*GLLCVKGEKGRRRMACSQREIAQG 27
           PP + G QG N  GPP E G  P + G+ GL  V+G+ G    AC +    +G
Sbjct: 103 PPGEKGQQGLNVMGPPGEDG-RPGRDGRPGLPGVRGDPGEPGKACEKGTPGRG 154


>tr|B6KIH9|B6KIH9_TOXGO Formin homology 2 domain-containing protein
            OS=Toxoplasma gondii ME49 GN=TGME49_006430 PE=4 SV=1
          Length = 5031

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -2

Query: 212  SKVLASESHPPKDYGTQGPNSNGPPKEIGSMPAQ*GK*GLLCVKGEKGRRR 60
            +K  A +  PP   G +GP   GPPK  G  P + G+ GL   K ++G+ +
Sbjct: 4579 AKKEAPKKGPPGGKGGKGPPGKGPPKGKGKGPKKKGEGGLKVGKKDEGKTK 4629


>tr|A8JA44|A8JA44_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_151898 PE=4 SV=1
          Length = 838

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = -2

Query: 221 TWMSKVLASESHPPKDYGTQGPNSNGPPK 135
           TWM KVL S S+   DYG   P S  PP+
Sbjct: 458 TWMRKVLLSSSNCSDDYGPAAPRSLCPPR 486