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NBDC - LSDB Archive
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BP917245
Clone id YMU001_000098_B08
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATTGTACTACTTTTTGCATTTGGGACTCTGAAAAATCGGTTGTATGTACAACAGTTTG
AGCTTGCTCGACCAATCAAATTCAAGTCATGACTAGCTGACCATGGTATGACTTTAATCA
TGAGAGAATATGGCCTTCATGAGGAGTGCTTGCATATGCCAGCAGATAGCTTGGTGCTGC
TATTCTCAAAGCCCCATTGAATTTGCCCAGCTTTGCCCCATTCAATACACTCAGATTTCT
GTGGCCAAGTGTTTGGACACATCCATTGTGTCCCCAAAAGCCCACCCAGCGCTACAGCCG
CACTCCTGAGCAATTGGCTCAATTGTTGAGGCAATTCTCCATGCCATTACCATCTCACAT
TTGCCTCTCACACCACAACTTTCCTGTTTCTCAGAAAACCTGCTGCCTCTACGCTCACAT
CACTACCCCTTCTGACATACACATCCCCACCCTTCATAAAAGGCATTTCTTTCATCTCTC
TGCAACAGCTCATTGCAGCCCTCTTCATCGTGATCCATTCCTTGTCATCCGAGTCGAATG
CA
■■Homology search results ■■ -
sp_hit_id Q0R5R2
Definition sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia virus 3 (strain 2026ND)
Align length 82
Score (bit) 38.1
E-value 0.028
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917245|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_B08.
         (542 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leuk...    38   0.028
sp|Q4U0X6|POL_HTL3P Gag-Pro-Pol polyprotein OS=Human T-cell leuk...    37   0.062
sp|Q10490|SYLC_SCHPO Putative leucyl-tRNA synthetase, cytoplasmi...    33   0.90 
sp|Q6MC93|DNAA1_PARUW Chromosomal replication initiator protein ...    33   0.90 
sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family prote...    32   2.6  
sp|Q8NFU7|TET1_HUMAN Protein TET1 OS=Homo sapiens GN=TET1 PE=2 SV=2    30   5.8  
sp|Q14289|FAK2_HUMAN Protein tyrosine kinase 2 beta OS=Homo sapi...    30   5.8  
sp|Q80VF6|F181B_MOUSE Protein FAM181B OS=Mus musculus GN=Fam181b...    30   7.6  

>sp|Q0R5R2|POL_HTL32 Gag-Pro-Pol polyprotein OS=Human T-cell leukemia
            virus 3 (strain 2026ND) GN=gag-pro-pol PE=3 SV=3
          Length = 1440

 Score = 38.1 bits (87), Expect = 0.028
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +2

Query: 242  WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLS-HHNFPVSQKTCCLYAH 418
            WP VW H   P    + + +       +L ++S+     +C S HHN  +S +    Y H
Sbjct: 898  WPLVWLHTPHPATSLRPWGQLLANAVIILDKYSLQHYGQVCKSFHHN--ISNQALTYYLH 955

Query: 419  ITTPSDIHIPTLHKRHFFHLSA 484
             +  S + I   H   F +L A
Sbjct: 956  TSDQSSVAILLQHSHRFHNLGA 977


>sp|Q4U0X6|POL_HTL3P Gag-Pro-Pol polyprotein OS=Human T-cell leukemia
            virus 3 (strain Pyl43) GN=gag-pro-pol PE=3 SV=4
          Length = 1440

 Score = 37.0 bits (84), Expect = 0.062
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +2

Query: 242  WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLS-HHNFPVSQKTCCLYAH 418
            WP VW H   P    + + +        L ++S+     IC S HHN  +S +    Y H
Sbjct: 898  WPLVWLHTPHPATSLRPWGQLLANAIITLDKYSLQHYGQICKSFHHN--ISNQALTYYLH 955

Query: 419  ITTPSDIHIPTLHKRHFFHLSA 484
             +  S + I   H   F +L A
Sbjct: 956  TSDQSSVAILLQHSHRFHNLGA 977


>sp|Q10490|SYLC_SCHPO Putative leucyl-tRNA synthetase, cytoplasmic
           OS=Schizosaccharomyces pombe GN=SPAC26F1.13c PE=1 SV=1
          Length = 1111

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +2

Query: 245 PSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLSHHNFPVSQKTCCLYAH 418
           P VW H        +  S + E LA+L R+F    P  I  S  +   +  T CLY H
Sbjct: 655 PEVWDHVFRQAPKPKNTSISDEALARLCREFQYFYPFDIRASGKDLVPNHLTFCLYTH 712


>sp|Q6MC93|DNAA1_PARUW Chromosomal replication initiator protein
           dnaA 1 OS=Protochlamydia amoebophila (strain UWE25)
           GN=dnaA1 PE=3 SV=1
          Length = 451

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 523 KEWITMKRAAMSCCREMKEMPFMKGGDVYVRRGSDV 416
           +E    ++ AM  CRE  +MPFMK GD++ R  S V
Sbjct: 385 RECALPRQLAMHLCREQLKMPFMKIGDLFSRDHSTV 420


>sp|Q10064|YAMB_SCHPO Uncharacterized PI3/PI4-kinase family protein
            C1F5.11c OS=Schizosaccharomyces pombe GN=SPAC1F5.11c PE=2
            SV=1
          Length = 3655

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 260  HPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLSHHNF 382
            +P   Q P  R+SR  E++ QLL  F+  L S I + + NF
Sbjct: 3311 YPFALQYPATRHSRREERMLQLLGTFNTVLRSKIEIQNRNF 3351


>sp|Q8NFU7|TET1_HUMAN Protein TET1 OS=Homo sapiens GN=TET1 PE=2 SV=2
          Length = 2136

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 147 CLHMPADSLVLLFSKPH*ICPALPHSIHS 233
           C H+   S VL+F +P   C ++PHS HS
Sbjct: 813 CDHLKGRSNVLVFQQPGFNCSSIPHSSHS 841


>sp|Q14289|FAK2_HUMAN Protein tyrosine kinase 2 beta OS=Homo sapiens
           GN=PTK2B PE=1 SV=2
          Length = 1009

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 21/86 (24%), Positives = 36/86 (41%)
 Frame = +2

Query: 215 APFNTLRFLWPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLSHHNFPVSQ 394
           A + T + L P+ +  P  P KP++   R P Q   L  +    +P  +C S      S 
Sbjct: 697 ARYRTPKILEPTAFQEP--PPKPSRPKYRPPPQTNLLAPKLQFQVPEGLCAS------SP 748

Query: 395 KTCCLYAHITTPSDIHIPTLHKRHFF 472
                  + +  + +H P LH+ + F
Sbjct: 749 TLTSPMEYPSPVNSLHTPPLHRHNVF 774


>sp|Q80VF6|F181B_MOUSE Protein FAM181B OS=Mus musculus GN=Fam181b
           PE=2 SV=1
          Length = 417

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 173 GAAILKAPLNL---PSFAPFNTLRFLWPSVWTHPLCPQ 277
           GA +L+ PL L   P   P      L+P  W  P CPQ
Sbjct: 289 GATVLRGPLELESGPFEQPAMVGNLLYPEPWNTPSCPQ 326
tr_hit_id Q8URT1
Definition tr|Q8URT1|Q8URT1_9DELA Polymerase (Fragment) OS=Simian T-lymphotropic virus 3
Align length 82
Score (bit) 37.0
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917245|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_B08.
         (542 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8URT1|Q8URT1_9DELA Polymerase (Fragment) OS=Simian T-lymphot...    37   0.67 
tr|Q8AGK6|Q8AGK6_9DELA Polymerase (Fragment) OS=Simian T-lymphot...    37   0.67 
tr|B4YQA7|B4YQA7_HTLV3 Pol protein (Fragment) OS=Human T-cell le...    37   0.67 
tr|Q6XNN9|Q6XNN9_9DELA Polymerase (Fragment) OS=Simian T-lymphot...    37   0.88 
tr|Q6XQ04|Q6XQ04_9DELA Polymerase (Fragment) OS=Simian T-lymphot...    35   2.0  
tr|O12274|O12274_9DELA Pol protein (Fragment) OS=Simian T-lympho...    35   2.0  
tr|B2TIZ7|B2TIZ7_CLOBB DNA ligase, NAD-dependent OS=Clostridium ...    34   4.4  
tr|Q8NIR9|Q8NIR9_NEUCR Putative uncharacterized protein G15D1.06...    34   4.4  
tr|B2UZ23|B2UZ23_CLOBA DNA ligase, NAD-dependent OS=Clostridium ...    34   5.7  
tr|B4C354|B4C354_9CHRO Putative uncharacterized protein OS=Cyano...    30   8.2  
tr|B5XQR9|B5XQR9_KLEP3 Rieske 2Fe-2S domain protein OS=Klebsiell...    33   9.7  
tr|A3PAF9|A3PAF9_PROM0 Inositol monophosphate family protein OS=...    33   9.7  
tr|B6D1N2|B6D1N2_KLEPN HpxD OS=Klebsiella pneumoniae GN=hpxD PE=...    33   9.7  

>tr|Q8URT1|Q8URT1_9DELA Polymerase (Fragment) OS=Simian
           T-lymphotropic virus 3 GN=pol PE=4 SV=1
          Length = 893

 Score = 37.0 bits (84), Expect = 0.67
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +2

Query: 242 WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLS-HHNFPVSQKTCCLYAH 418
           WP VW H   P    + + +        L ++S+     IC S HHN  +S +    Y H
Sbjct: 351 WPLVWLHTPHPATSLRPWGQLLANAIITLDKYSLQHYGQICKSFHHN--ISNQALTYYLH 408

Query: 419 ITTPSDIHIPTLHKRHFFHLSA 484
            +  S + I   H   F +L A
Sbjct: 409 TSDQSSVAILLQHSHRFHNLGA 430


>tr|Q8AGK6|Q8AGK6_9DELA Polymerase (Fragment) OS=Simian
           T-lymphotropic virus 3 PE=4 SV=1
          Length = 893

 Score = 37.0 bits (84), Expect = 0.67
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +2

Query: 242 WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLS-HHNFPVSQKTCCLYAH 418
           WP VW H   P    + + +        L ++S+     +C S HHN  +S +    Y H
Sbjct: 351 WPLVWLHTPHPATSLRPWGQLLANAVITLDRYSLQHYGQVCKSFHHN--ISNQALTYYLH 408

Query: 419 ITTPSDIHIPTLHKRHFFHLSA 484
            +  S + I   H   F +L A
Sbjct: 409 TSDQSSVAILLQHSHRFHNLGA 430


>tr|B4YQA7|B4YQA7_HTLV3 Pol protein (Fragment) OS=Human T-cell
           leukemia virus 3 GN=pol PE=4 SV=1
          Length = 893

 Score = 37.0 bits (84), Expect = 0.67
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +2

Query: 242 WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLS-HHNFPVSQKTCCLYAH 418
           WP VW H   P    + + +        L ++S+     IC S HHN  +S +    Y H
Sbjct: 351 WPLVWLHTPHPATSLRPWGQLLANAIITLDKYSLQHYGQICKSFHHN--ISNQALTYYLH 408

Query: 419 ITTPSDIHIPTLHKRHFFHLSA 484
            +  S + I   H   F +L A
Sbjct: 409 TSDQSSVAILLQHSHRFHNLGA 430


>tr|Q6XNN9|Q6XNN9_9DELA Polymerase (Fragment) OS=Simian
           T-lymphotropic virus 3 PE=4 SV=1
          Length = 893

 Score = 36.6 bits (83), Expect = 0.88
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +2

Query: 242 WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLSHHNFPVSQKTCCLYAHI 421
           WP VW H   P    + + +        L ++S+     +C S H+  +S++    Y H 
Sbjct: 351 WPLVWLHTPHPATSLRPWGQLLANAVITLDRYSLQHYGQVCKSFHH-SISKQALTYYLHT 409

Query: 422 TTPSDIHIPTLHKRHFFHLSA 484
           +  S + I   H   F +L A
Sbjct: 410 SDQSSVAILLQHSHRFHNLGA 430


>tr|Q6XQ04|Q6XQ04_9DELA Polymerase (Fragment) OS=Simian
           T-lymphotropic virus 3 GN=pol PE=4 SV=1
          Length = 893

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +2

Query: 242 WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLS-HHNFPVSQKTCCLYAH 418
           WP VW H   P    + + +        L ++S+     IC S HHN  +S +    Y H
Sbjct: 351 WPLVWLHTPHPATSLRPWGQLLANAIITLDKYSLQHYGQICKSFHHN--ISNQALTYYLH 408

Query: 419 ITTPSDIHIPTLHKRHFFHL 478
            +  S + I   H   F +L
Sbjct: 409 TSDQSSVAILLQHSHRFHNL 428


>tr|O12274|O12274_9DELA Pol protein (Fragment) OS=Simian
           T-lymphotropic virus 3 GN=pol PE=4 SV=1
          Length = 893

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = +2

Query: 242 WPSVWTHPLCPQKPTQRYSRTPEQLAQLLRQFSMPLPSHICLS-HHNFPVSQKTCCLYAH 418
           WP VW H   P    + + +        L ++S+     IC S HHN  +S +    Y H
Sbjct: 351 WPLVWLHTPHPATSLRPWGQLLANAIITLDKYSLQHYGQICKSFHHN--ISNQALTYYLH 408

Query: 419 ITTPSDIHIPTLHKRHFFHL 478
            +  S + I   H   F +L
Sbjct: 409 TSDQSSVAILLQHSHRFHNL 428


>tr|B2TIZ7|B2TIZ7_CLOBB DNA ligase, NAD-dependent OS=Clostridium
           botulinum (strain Eklund 17B / type B) GN=ligA PE=4 SV=1
          Length = 667

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -2

Query: 514 ITMKRAAMSCCREMKEMPFMKGGDVYVRRGSDVSVEAAGFLRN 386
           +T+KRA ++   ++K      G DV+VRR +DV  E  G L N
Sbjct: 351 VTVKRATLNNMDDIKRKGVRIGADVFVRRSNDVIPEIMGTLEN 393


>tr|Q8NIR9|Q8NIR9_NEUCR Putative uncharacterized protein G15D1.060
           (Predicted protein) OS=Neurospora crassa GN=G15D1.060
           PE=4 SV=1
          Length = 815

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +2

Query: 317 AQLLRQFSMPLPSHICLSHHNFPVSQKTCCLYAHITTPSDIHIPTLHKRHFFHLSATAHC 496
           A+  + F  P  SH   + H F  S  T    A   TP+ +H P     H FH SAT+H 
Sbjct: 612 AKRAKSFHTPATSHTPATFHTFHPSA-TSHNSATFHTPATLHTPATF--HTFHPSATSHD 668

Query: 497 SPLHRDP 517
           S +  +P
Sbjct: 669 SAIAHNP 675


>tr|B2UZ23|B2UZ23_CLOBA DNA ligase, NAD-dependent OS=Clostridium
           botulinum (strain Alaska E43 / type E3) GN=ligA PE=4
           SV=1
          Length = 667

 Score = 33.9 bits (76), Expect = 5.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -2

Query: 514 ITMKRAAMSCCREMKEMPFMKGGDVYVRRGSDVSVEAAGFLRN 386
           +T+KRA ++   ++K      G DV++RR +DV  E  G L N
Sbjct: 351 VTVKRATLNNMDDIKRKGVRIGADVFIRRSNDVIPEIMGTLEN 393


>tr|B4C354|B4C354_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_3445 PE=4
           SV=1
          Length = 134

 Score = 30.0 bits (66), Expect(2) = 8.2
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 235 ISVAKCLDTSIVSPKAHPALQPHS*AIGSIVEAILHAITISHLPLTPQLSCFSENLLPL 411
           IS   C + ++   K    L P S  +   ++  L    IS LPLTP+++C + NL P+
Sbjct: 39  ISPVSCYEVALAQQKGR-LLLPCS--VNQWLQEALEPSGISLLPLTPKIACCAVNLSPI 94



 Score = 21.9 bits (45), Expect(2) = 8.2
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +2

Query: 497 SPLHRDPF 520
           SP+HRDPF
Sbjct: 92  SPIHRDPF 99