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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917252
Clone id YMU001_000098_C05
Library
Length 210
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAATGCAAGCGGCATAAGTCCATGGTTAGCTTTTCGCAACATCGCAAGTCGAGGTGTGTT
AAAGTGGAACCGAGGCAGCCAATGGCACTCTGGCACACTCTCCAGGTTGCCACACCAGCA
GAACATGCACTGAGAGTTTTCCGATAGTGTGGCATCCTGGAGGTATGGTCGCAGCTGCGC
AAGGACGAGGGATGGCGAGATTAGGAGTGG
■■Homology search results ■■ -
sp_hit_id P52544
Definition sp|P52544|PRTP_HHV6Z Probable processing and transport protein OS=Human herpesvirus 6B (strain Z29)
Align length 31
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917252|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_C05.
         (210 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52544|PRTP_HHV6Z Probable processing and transport protein O...    31   2.2  
sp|P52384|PRTP_HHV6U Probable processing and transport protein O...    31   2.2  
sp|O83968|Y1003_TREPA Uncharacterized protein TP_1003 OS=Trepone...    30   4.9  
sp|P21707|SYT1_RAT Synaptotagmin-1 OS=Rattus norvegicus GN=Syt1 ...    29   8.3  
sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=...    29   8.3  
sp|P46096|SYT1_MOUSE Synaptotagmin-1 OS=Mus musculus GN=Syt1 PE=...    29   8.3  
sp|Q60HC0|SYT1_MACFA Synaptotagmin-1 OS=Macaca fascicularis GN=S...    29   8.3  
sp|P21579|SYT1_HUMAN Synaptotagmin-1 OS=Homo sapiens GN=SYT1 PE=...    29   8.3  
sp|P48018|SYT1_BOVIN Synaptotagmin-1 OS=Bos taurus GN=SYT1 PE=1 ...    29   8.3  

>sp|P52544|PRTP_HHV6Z Probable processing and transport protein
           OS=Human herpesvirus 6B (strain Z29) GN=U40 PE=3 SV=2
          Length = 726

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 173 CDHTSRMPHYRKTLSACSAGV---ATWRVCQ 90
           CDH   +PH ++ L+ C  G    + W VC+
Sbjct: 562 CDHAEMLPHMKEDLARCIEGTIHPSVWMVCE 592


>sp|P52384|PRTP_HHV6U Probable processing and transport protein
           OS=Human herpesvirus 6A (strain Uganda-1102) GN=U40 PE=3
           SV=1
          Length = 726

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 173 CDHTSRMPHYRKTLSACSAGV---ATWRVCQ 90
           CDH   +PH ++ L+ C  G    + W VC+
Sbjct: 562 CDHAEMLPHMKEDLARCIEGTIHPSVWMVCE 592


>sp|O83968|Y1003_TREPA Uncharacterized protein TP_1003 OS=Treponema
           pallidum GN=TP_1003 PE=4 SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 178 AAATIPPGCHTIGKLSVHVLLVWQPGECARVPLAASVPL*HTST 47
           A A +PP  HT G+  +HVL    P   AR   A S    ++ST
Sbjct: 41  AVARVPPLLHTTGRAFMHVLTFLLPEAAARSLAAVSTAPSNSST 84


>sp|P21707|SYT1_RAT Synaptotagmin-1 OS=Rattus norvegicus GN=Syt1
           PE=1 SV=3
          Length = 421

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  PRQPMALWHTLQVATPAEHALRV 138
           PR+P+A WHTLQV    +  L V
Sbjct: 397 PRRPIAQWHTLQVEEEVDAMLAV 419


>sp|Q5R4J5|SYT1_PONAB Synaptotagmin-1 OS=Pongo abelii GN=SYT1 PE=2
           SV=1
          Length = 419

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  PRQPMALWHTLQVATPAEHALRV 138
           PR+P+A WHTLQV    +  L V
Sbjct: 395 PRRPIAQWHTLQVEEEVDAMLAV 417


>sp|P46096|SYT1_MOUSE Synaptotagmin-1 OS=Mus musculus GN=Syt1 PE=1
           SV=1
          Length = 421

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  PRQPMALWHTLQVATPAEHALRV 138
           PR+P+A WHTLQV    +  L V
Sbjct: 397 PRRPIAQWHTLQVEEEVDAMLAV 419


>sp|Q60HC0|SYT1_MACFA Synaptotagmin-1 OS=Macaca fascicularis GN=SYT1
           PE=2 SV=1
          Length = 419

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  PRQPMALWHTLQVATPAEHALRV 138
           PR+P+A WHTLQV    +  L V
Sbjct: 395 PRRPIAQWHTLQVEEEVDAMLAV 417


>sp|P21579|SYT1_HUMAN Synaptotagmin-1 OS=Homo sapiens GN=SYT1 PE=1
           SV=1
          Length = 422

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  PRQPMALWHTLQVATPAEHALRV 138
           PR+P+A WHTLQV    +  L V
Sbjct: 398 PRRPIAQWHTLQVEEEVDAMLAV 420


>sp|P48018|SYT1_BOVIN Synaptotagmin-1 OS=Bos taurus GN=SYT1 PE=1
           SV=1
          Length = 422

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  PRQPMALWHTLQVATPAEHALRV 138
           PR+P+A WHTLQV    +  L V
Sbjct: 398 PRRPIAQWHTLQVEEEVDAMLAV 420
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917252|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_C05.
         (210 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******