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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917259
Clone id YMU001_000098_D05
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGAGATGCAAATGAGCTGGGCTAACTTTTCCTCTGCGTTCCACTTCAAGATTCTTGAAAC
ATATGGTAGTTGCATCACACAAATTGTCCCTGAATGGTCAAAAGACCGCCTAAAAACAGC
CAGTCAAATCCTCCTTTGGCTTGTTAAATAAAGCTTCTCACCCATCCACGGTTGACTGCT
ATTCCAGGCCCAGATCCGCTCCCCGCGGCAACCATTTAGTCTGTTGTAAAGCCTGGCTGT
CCCCATCCAAATCTGGCCCACTCCGGTATCCCACTTGTCGAGTGGCCGTCCCAGATGCAT
TCTGCCCATCCTGTCAGAGTTTGAGGAACGGGGTAGCCATAGCCAGGTGAGCGAAATGCG
AAGAAGGCACGTGACCAGTCCGGCGATCACTTGAGGTTGGCTTCCACGCATTCACTTGAG
GTGGGTCTCTCCCCCCCCCTCTCTGTGAACTTGTCTGCCATCGCTTCAAAAGGGCGTCTC
TCTCTCTCTCTCCGAAGTCTGATCCCCAGGGCAAGCCCTTACG
■■Homology search results ■■ -
sp_hit_id A3GFK8
Definition sp|A3GFK8|SEC31_PICST Protein transport protein SEC31 OS=Pichia stipitis
Align length 100
Score (bit) 34.7
E-value 0.28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917259|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_D05.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A3GFK8|SEC31_PICST Protein transport protein SEC31 OS=Pichia ...    35   0.28 
sp|Q5DRQ5|RTBDN_SPETR Retbindin OS=Spermophilus tridecemlineatus...    33   1.1  
sp|Q5KCH0|PACC_CRYNE pH-response transcription factor pacC/RIM10...    32   2.4  
sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19 O...    30   7.0  
sp|Q96AC6|KIFC2_HUMAN Kinesin-like protein KIFC2 OS=Homo sapiens...    30   9.0  
sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 ...    30   9.0  
sp|Q01836|P60_LISIN Protein p60 OS=Listeria innocua GN=iap PE=3 ...    30   9.1  
sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12 ...    30   9.1  

>sp|A3GFK8|SEC31_PICST Protein transport protein SEC31 OS=Pichia
            stipitis GN=SEC31 PE=3 SV=1
          Length = 1244

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
 Frame = +1

Query: 172  LTAIPGPDPLPAATI*SV-VKPGCPHPNLAHSGIPLVEWPSQMHSAHPV-RV*GTG*P*P 345
            +TA P P PLP  T+  + + PG      + S  P     S+ +S   V  +  +  P P
Sbjct: 915  VTATPSPTPLPQTTVPPMSIPPGPKRSMSSGSAAPPPPKGSRANSKVAVPTIQSSPRPAP 974

Query: 346  GERNAKKARDQSGDHLRLASTHSLEVGLSPPLSVNLSAIA 465
               N + A   S D    ++THS  VG+SP    N  A+A
Sbjct: 975  VHVNNRYAPPPSADVNAPSNTHSSPVGVSPSTKKNPYAVA 1014


>sp|Q5DRQ5|RTBDN_SPETR Retbindin OS=Spermophilus tridecemlineatus
           GN=RTBDN PE=2 SV=1
          Length = 254

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +3

Query: 228 KAWLSPSKSGPLRYPTCRVAVPDAFCPSCQSLRNGVAIAR*AKCEEGT*PVRRSLEVGFH 407
           +A+  P    P    T   + P  F P C++  +G        CE     ++R+L   FH
Sbjct: 76  QAFPLPEPCCPSEMDTPETSGPGIFPPRCRTPSSG--------CESFLGHLQRALRNRFH 127

Query: 408 AFT*GGSLPPPLCELVCHRF 467
               G    PPLCE +C  +
Sbjct: 128 LLLLGVRQAPPLCEELCQNW 147


>sp|Q5KCH0|PACC_CRYNE pH-response transcription factor pacC/RIM101
           OS=Cryptococcus neoformans GN=RIM101 PE=3 SV=1
          Length = 917

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 305 PILSEFEERGSHSQVSEMRRRHVTSPAIT*GWLPRIHLRW 424
           P +S   E G    + EMRRRH    A+   WL  ++L+W
Sbjct: 841 PSVSTANEEGKDMTIEEMRRRHA---ALIKSWLVAVNLQW 877


>sp|O94966|UBP19_HUMAN Ubiquitin carboxyl-terminal hydrolase 19
           OS=Homo sapiens GN=USP19 PE=1 SV=2
          Length = 1318

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 251 IWPTPVSHLSSGRPRCILPILSEFEERGSHSQVSEMRRRHVTSPAIT 391
           + P P +HL+S +P C++P +      G   +  E   + V  P  T
Sbjct: 451 VTPKPETHLASPKPTCMVPPMPHSPVSGDSVEEEEEEEKKVCLPGFT 497


>sp|Q96AC6|KIFC2_HUMAN Kinesin-like protein KIFC2 OS=Homo sapiens
           GN=KIFC2 PE=1 SV=1
          Length = 838

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 278 TSGIPEWARFGWGQPGFTTD*MVAAGSGSGPG 183
           +S   EW ++ WGQPG       AAGS + PG
Sbjct: 748 SSSPTEWVKWSWGQPG-------AAGSRAPPG 772


>sp|O88737|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1
           SV=3
          Length = 3942

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 150 KASHPSTVDCYSRPRSAPRGNHLVC--CKAWLSPSKSGPLRYPTC 278
           +A H +     ++P++ P+     C  C+A L+    GP  Y TC
Sbjct: 440 RAEHQAASKAAAKPKTMPKERAAACPLCQAELNVGSRGPANYNTC 484


>sp|Q01836|P60_LISIN Protein p60 OS=Listeria innocua GN=iap PE=3
           SV=2
          Length = 467

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = -1

Query: 451 SSQRGGGR---DPPQVNAW-KPTSSDRRTGHVPSSHFAHLAMATPFLKL*QDGQNASGTA 284
           +S +GG +   +  + N W K T +D +TG+V   +    A +TP +K     Q      
Sbjct: 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGYVNGKYLTDKATSTPVVK-----QEVKKET 157

Query: 283 TRQVGYRSGPDLDGDSQALQQTKWLPRGAD 194
           T+QV   +    +      QQT   P+ A+
Sbjct: 158 TQQVKPATEAKTEVKQPTTQQTAPAPKAAE 187


>sp|Q8R4H2|ARHGC_MOUSE Rho guanine nucleotide exchange factor 12
           OS=Mus musculus GN=Arhgef12 PE=2 SV=1
          Length = 1543

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 430 RDPPQVNAWKPTSSDRRTGHVPSSHFAHLAMATPFLKL*QDGQNASGTATRQVGYRSGP 254
           +DP ++      +    TG++P+S    ++ AT    L Q+G   + T T+QVG  S P
Sbjct: 641 QDPAKLRQSGVANEGTDTGYLPASS---MSSATSGTALSQEGGRENDTGTKQVGEASAP 696
tr_hit_id Q6K3C4
Definition tr|Q6K3C4|Q6K3C4_ORYSJ Putative uncharacterized protein OSJNBa0063E14.24 OS=Oryza sativa subsp. japonica
Align length 78
Score (bit) 35.8
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917259|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_D05.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6K3C4|Q6K3C4_ORYSJ Putative uncharacterized protein OSJNBa00...    36   1.3  
tr|B8PHI5|B8PHI5_9APHY Aryl-alcohol oxidase-like protein (Fragme...    35   3.0  
tr|B0XF55|B0XF55_CULQU Putative uncharacterized protein OS=Culex...    34   5.1  
tr|A2Q806|A2Q806_ASPNC Similarity to EST an_2155 -Aspergillus ni...    33   6.6  
tr|Q2G585|Q2G585_NOVAD Putative uncharacterized protein OS=Novos...    33   8.6  

>tr|Q6K3C4|Q6K3C4_ORYSJ Putative uncharacterized protein
           OSJNBa0063E14.24 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0063E14.24 PE=4 SV=1
          Length = 144

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = -1

Query: 421 PQVNAWKPTSSDRRTGHVPSSHFAHLAMATPFLKL*QDGQNASGTATRQVGYRSGPDLDG 242
           PQVNAW+  + +    ++ +S    +  A P  ++  D + ASG A   V   S P  +G
Sbjct: 7   PQVNAWEIINDEVEQTYIAASVLMQIDDAKPTCQMPVDREYASGGAADLVDLTSRPHWEG 66

Query: 241 DSQALQQTKWLPRGADLG 188
           ++   +Q  +   G D G
Sbjct: 67  EAAGSKQGLYDDGGGDSG 84


>tr|B8PHI5|B8PHI5_9APHY Aryl-alcohol oxidase-like protein (Fragment)
           OS=Postia placenta Mad-698-R GN=POSPLDRAFT_54008 PE=4
           SV=1
          Length = 578

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = -2

Query: 351 LTWLWL--PRSSNSDRMGRMHLGRPLDKWDTGVGQIWM-GTARLYNRLNGCRGERIWAWN 181
           LTW +   P+S  +DR      GR L    T   QIW  G+   YNR     G+  W+WN
Sbjct: 50  LTWNYTTTPQSGLNDRTLPYPRGRVLGGSSTINFQIWTRGSVDDYNRYANVTGDPGWSWN 109

Query: 180 SSQPWM 163
              P+M
Sbjct: 110 EILPYM 115


>tr|B0XF55|B0XF55_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ018111 PE=4 SV=1
          Length = 683

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 20/58 (34%), Positives = 24/58 (41%)
 Frame = -1

Query: 505 GSDFGERERDALLKRWQTSSQRGGGRDPPQVNAWKPTSSDRRTGHVPSSHFAHLAMAT 332
           GSD    E  A    W   +  GG  DP Q  A   TSS     + P S+ AH+   T
Sbjct: 573 GSDLYLNEEQAKYINWTCKAAEGGADDPMQSLAPGQTSSPSPAANAPISNLAHILPTT 630


>tr|A2Q806|A2Q806_ASPNC Similarity to EST an_2155 -Aspergillus niger
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=An01g02610 PE=4 SV=1
          Length = 276

 Score = 33.5 bits (75), Expect = 6.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 309 MGRMHL--GRPLDKWDTGVGQIWMGTARLYNRLNGCRGERIWAWNSSQPWMGEKLYLTSQ 136
           MGR+ L   RP++     VGQ+ +GTA +   +N         W +  PW GE+  L   
Sbjct: 1   MGRVELLAYRPVESRQMVVGQVLLGTAAMRAAIN---------WRTRSPWQGEQRSLVVA 51

Query: 135 RR 130
           R+
Sbjct: 52  RK 53


>tr|Q2G585|Q2G585_NOVAD Putative uncharacterized protein
           OS=Novosphingobium aromaticivorans (strain DSM 12444)
           GN=Saro_2552 PE=3 SV=1
          Length = 395

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 190 PDPLPAATI*SVVKPGCPHPNLAHSGIPLVEWPSQMHSAHPV 315
           P P P+AT    V PG P P +A +  P VE P    +  PV
Sbjct: 38  PAPTPSATAQGPVVPGSPPPRVATTDAPTVETPPPQAAPPPV 79