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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917261
Clone id YMU001_000098_D07
Library
Length 273
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCATCATCCTCCTCTTCACTAGTGCTGCTGCTCAAAGTCACTTGTTCCCCATTCTCTTC
GATAATAGTATCAGATATCACACAAATCTGAGGCATCTTCATTTCCTTGTCCACTTTTTT
CTTGCCACCAGCTATGTTTACTACCTCAAGAGATGCAGTAGTTATGAGAGGTCCGGGATT
GTCTTGCTTCATACCAGTCCTTCCCACACCTGTCCCCTTTTTGGTGATGCTTCCATTTTC
ACCCAATGTTCCATTTTCACTCGATGCTCCGTA
■■Homology search results ■■ -
sp_hit_id A6LEP7
Definition sp|A6LEP7|FABH_PARD8 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
Align length 87
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917261|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_D07.
         (273 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6LEP7|FABH_PARD8 3-oxoacyl-[acyl-carrier-protein] synthase 3...    32   1.3  

>sp|A6LEP7|FABH_PARD8 3-oxoacyl-[acyl-carrier-protein] synthase 3
           OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC 11152) GN=fabH PE=3 SV=1
          Length = 334

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
 Frame = +1

Query: 10  LLFTSAAAQSHLFPILFDNSIRYHTNLRXXXXXXXXXXATSYVYYLKRCSSYERSG---- 177
           ++ T+     H FP    + I YHT  +             ++Y L+  ++Y RSG    
Sbjct: 79  VVLTATTTPDHHFPTT-SSIIAYHTGCKNAMTFDMQGACAGFLYALETGANYIRSGRYKK 137

Query: 178 ---------IVLLHTSPSHTCPLFGDA 231
                      +       TCPLFGDA
Sbjct: 138 VVVVSGDKMTSITDYQDRSTCPLFGDA 164
tr_hit_id B7BBZ1
Definition tr|B7BBZ1|B7BBZ1_9PORP Putative uncharacterized protein OS=Parabacteroides johnsonii DSM 18315
Align length 89
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917261|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_D07.
         (273 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7BBZ1|B7BBZ1_9PORP Putative uncharacterized protein OS=Parab...    34   3.2  
tr|A7AJQ4|A7AJQ4_9PORP Putative uncharacterized protein OS=Parab...    34   3.2  
tr|Q89H12|Q89H12_BRAJA Bll6183 protein OS=Bradyrhizobium japonic...    33   5.5  
tr|A9SZ33|A9SZ33_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.5  
tr|B5H4Z2|B5H4Z2_STRPR Secreted protein OS=Streptomyces pristina...    33   7.0  
tr|Q94HU6|Q94HU6_ORYSA Putative uncharacterized protein OSJNBb00...    33   9.4  
tr|Q33A15|Q33A15_ORYSJ Transposon protein, putative, CACTA, En/S...    33   9.4  

>tr|B7BBZ1|B7BBZ1_9PORP Putative uncharacterized protein
           OS=Parabacteroides johnsonii DSM 18315
           GN=PRABACTJOHN_02555 PE=4 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
 Frame = +1

Query: 4   IILLFTSAAAQSHLFPILFDNSIRYHTNLRXXXXXXXXXXATSYVYYLKRCSSYERSG-- 177
           I ++ T+     H FP    + I YHT  +             ++Y L+  S+Y RSG  
Sbjct: 77  IEVILTATTTPDHHFPTT-SSIIAYHTGCKNAMTFDLQGACAGFLYALETGSNYIRSGRY 135

Query: 178 -----------IVLLHTSPSHTCPLFGDA 231
                        +       TCPLFGDA
Sbjct: 136 KKVIVVAGDKMTAITDYQDRSTCPLFGDA 164


>tr|A7AJQ4|A7AJQ4_9PORP Putative uncharacterized protein
           OS=Parabacteroides merdae ATCC 43184 GN=PARMER_03670
           PE=4 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
 Frame = +1

Query: 4   IILLFTSAAAQSHLFPILFDNSIRYHTNLRXXXXXXXXXXATSYVYYLKRCSSYERSG-- 177
           I ++ T+     H FP    + I YHT  +             ++Y L+  S+Y RSG  
Sbjct: 77  IEVILTATTTPDHHFPTT-SSIIAYHTGCKNAMTFDLQGACAGFLYALETGSNYIRSGRY 135

Query: 178 -----------IVLLHTSPSHTCPLFGDA 231
                        +       TCPLFGDA
Sbjct: 136 KKVVVVAGDKMTAITDYQDRSTCPLFGDA 164


>tr|Q89H12|Q89H12_BRAJA Bll6183 protein OS=Bradyrhizobium japonicum
           GN=bll6183 PE=3 SV=1
          Length = 832

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 273 YGASSENGTLGENGSITKKGTGVGRTGMKQDNPGPLITTASLEVVNIAGGKKKVD 109
           Y A++E GT+GEN  ++  G  +G TG+     GP+    SL  VN   G   +D
Sbjct: 453 YNATAEIGTMGENYVVSGSGIFLGPTGVPDTVAGPV----SLRTVNQYNGLYAMD 503


>tr|A9SZ33|A9SZ33_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234551 PE=4 SV=1
          Length = 252

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = -1

Query: 270 GASSENGTLGENGSITK---KGTGVGRTG-MKQDNPGPLITTASLEVVNIAGGKKKVDKE 103
           G     G+ G+     K   KG G G+ G  KQDN GP I    +++   A G K   K 
Sbjct: 80  GGGENKGSSGDGKGDDKGDGKGKGKGKGGDQKQDNKGPKIMELQVDLCCEACGYKVKKKI 139

Query: 102 MKMPQICVISDTIIEE 55
           MK+  +  +   ++E+
Sbjct: 140 MKLEDVQTVVVDVVEK 155


>tr|B5H4Z2|B5H4Z2_STRPR Secreted protein OS=Streptomyces
           pristinaespiralis ATCC 25486 GN=SSDG_00218 PE=4 SV=1
          Length = 383

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 256 KWNIG*KWKHHQKGDRCGKDWYEARQSRTS--HNYC 155
           +W  G +W  H + +RCG  W E  Q   +  H YC
Sbjct: 76  RWAGGGEWGSHPRAERCGGAWVETAQGPVTPGHGYC 111


>tr|Q94HU6|Q94HU6_ORYSA Putative uncharacterized protein
           OSJNBb0036B06.11 OS=Oryza sativa GN=OSJNBb0036B06.11
           PE=4 SV=1
          Length = 695

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 252 GTLGENGSITKKGTGVG-RTGMKQDNPGPLITTASLEVVNIAGGKKKVDKEMKMPQI 85
           G L  +G+  ++G G G R G    +PG   TT +   V   GG  +VD++  +P I
Sbjct: 5   GDLRRDGAAPERGEGRGKRNGWSTAHPGSTTTTETATGVEEGGGAARVDEDGGVPAI 61


>tr|Q33A15|Q33A15_ORYSJ Transposon protein, putative, CACTA, En/Spm
           sub-class OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g16800 PE=4 SV=2
          Length = 653

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 252 GTLGENGSITKKGTGVG-RTGMKQDNPGPLITTASLEVVNIAGGKKKVDKEMKMPQI 85
           G L  +G+  ++G G G R G    +PG   TT +   V   GG  +VD++  +P I
Sbjct: 5   GDLRRDGAAPERGEGRGKRNGWSTAHPGSTTTTETATGVEEGGGAARVDEDGGVPAI 61