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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917266
Clone id YMU001_000098_E05
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTCTGTATACAATACTTGACTCATGCGTGACAGACAATACAGTCATCAAAGAGAACTTC
CGAGCCATATCGGATAAGAACCCCAAGTATTCCAAAAAATGTCAGATGTGCTAAGATATC
AACATACTCGAGAAAGCACATACATTTCTGCATCTTCAACTCCTGTTTTGAAGTTTCTAA
AGGAAACCTTGTTGGCTCTCTTTTAGAAGAACCTAGCTCAGTATCAATGTCTTCATTTTC
CACGTTATGTACATATGAGGAATGACACGACCGAGAATGTGACAATCTTGCTGAGGTTGA
CAATCTTCTACATGATAGAGATTTTTTTGAACTCCAACTTTCAATTTCCTTGTTGTTTGT
TGTTTCTTCCTCTAGCTCTTGCTGCAGCCACTTTGTTCTGAGCTGCTTGATCTCGCCAGT
AGACCATGGGTCAGAGTTCTCATCGTTACCATATTGACCAGATTCATCAGACTTCGCAAC
AATTTCATCCTCATCTTTTGCCTCTTCCATAACGTAACTTTACACTAAGCCTGCAAAATT
TGTCTTGCGTTGCTGCTGT
■■Homology search results ■■ -
sp_hit_id Q756V1
Definition sp|Q756V1|FKBP3_ASHGO FK506-binding protein 3 OS=Ashbya gossypii
Align length 52
Score (bit) 32.0
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917266|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_E05.
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q756V1|FKBP3_ASHGO FK506-binding protein 3 OS=Ashbya gossypii...    32   2.1  
sp|Q7ZYA6|CDV3A_XENLA Protein CDV3 homolog A OS=Xenopus laevis G...    32   2.1  
sp|P53064|RTF1_YEAST RNA polymerase-associated protein RTF1 OS=S...    30   6.2  
sp|B4LN42|EIF3J_DROVI Eukaryotic translation initiation factor 3...    30   6.2  
sp|A4PB26|CDV3B_XENLA Protein CDV3 homolog B OS=Xenopus laevis G...    30   6.2  
sp|O43361|ZN749_HUMAN Zinc finger protein 749 OS=Homo sapiens GN...    30   8.0  
sp|O94880|PHF14_HUMAN PHD finger protein 14 OS=Homo sapiens GN=P...    30   8.1  
sp|O76329|ACTNB_DICDI Interaptin OS=Dictyostelium discoideum GN=...    30   8.1  

>sp|Q756V1|FKBP3_ASHGO FK506-binding protein 3 OS=Ashbya gossypii
           GN=FPR3 PE=3 SV=1
          Length = 418

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = -2

Query: 495 DEDEIVAKSDESGQYGNDENSDPWSTGEIKQLRTKWLQQELEEETTNNKEIE 340
           DED+++A S+E  +  ++E S+P    E K+ + K  + E EEE +  ++ E
Sbjct: 64  DEDDLLADSEEEEEEESEEESEP----ETKKPKKKAAKAESEEEDSEEEDSE 111


>sp|Q7ZYA6|CDV3A_XENLA Protein CDV3 homolog A OS=Xenopus laevis
           GN=cdv3-A PE=2 SV=1
          Length = 240

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
 Frame = -2

Query: 555 QQRKTNFAGL-V*SYVMEEAKDEDEIVAKSD------ESGQYGNDENSDPWS 421
           +Q++ +++GL + S  +   K++DE   K +      E+G YG D++S PW+
Sbjct: 83  EQKEVDYSGLRIQSLQLSNEKEDDENEKKEEQGADWEETGGYGTDKSSGPWN 134


>sp|P53064|RTF1_YEAST RNA polymerase-associated protein RTF1
           OS=Saccharomyces cerevisiae GN=RTF1 PE=1 SV=2
          Length = 558

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -2

Query: 507 EEAKDEDEIVAKSDESGQYGNDENSDPWSTGEI--KQLRTKWLQQELEEE 364
           E+ ++ED    K DE  +YG+DE  +P+   +   K+   +W ++E E++
Sbjct: 190 EDYREEDY---KDDEGSEYGDDEEYNPFDRRDTYDKREEVEWAEEEDEQD 236


>sp|B4LN42|EIF3J_DROVI Eukaryotic translation initiation factor 3
           subunit J OS=Drosophila virilis GN=Adam PE=3 SV=1
          Length = 236

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -2

Query: 504 EAKDEDEIVAKSDESGQYGNDENSDPWSTGEIKQLRTKWLQQELEEETTNNKEIE 340
           E +D+DE V +S E  +   DE     +   +K    K L+ +LEE+   N+E E
Sbjct: 27  EGEDDDEDVKESWEDEEEKKDEEKPTKTEAPVKTKPNKALKAKLEEQERLNEEEE 81


>sp|A4PB26|CDV3B_XENLA Protein CDV3 homolog B OS=Xenopus laevis
           GN=cdv3-B PE=2 SV=1
          Length = 242

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
 Frame = -2

Query: 555 QQRKTNFAGL-V*SYVMEEAKDEDEIVAKSD------ESGQYGNDENSDPWS 421
           +Q++ +++GL + S  +   K++DE   K +      ESG +G+D++S PW+
Sbjct: 85  EQKEVDYSGLRLQSLQISNEKEDDENENKEEQGADWEESGGFGSDKSSGPWN 136


>sp|O43361|ZN749_HUMAN Zinc finger protein 749 OS=Homo sapiens
           GN=ZNF749 PE=2 SV=1
          Length = 691

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
 Frame = +3

Query: 30  DRQYSHQRELPSHIG*EPQVFQKMSDVLRYQ--HTRESTYISASSTPVLKFLKETLLALF 203
           + Q +H  E P       ++F+  S++++YQ  H  E  Y          F++++     
Sbjct: 126 EHQKTHNGERPYEFSECGELFRYNSNLIKYQQNHAGERPYEGTEYGKT--FIRKS----- 178

Query: 204 *KNLAQYQCLHFPRYVHMRNDTTENVTILLRLT 302
             NL Q+Q +H   ++  R+D  E+  IL R T
Sbjct: 179 --NLVQHQKIHSEGFLSKRSDPIEHQEILSRPT 209


>sp|O94880|PHF14_HUMAN PHD finger protein 14 OS=Homo sapiens
           GN=PHF14 PE=1 SV=1
          Length = 888

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = -2

Query: 495 DEDEIVAKSDESGQYGNDE-NSDPWSTGEIKQLRTKWLQQEL--EEETTNN 352
           DEDE     ++    GNDE +S P S G  K+ ++K L +    +EE TN+
Sbjct: 239 DEDEGSGSDEDENDEGNDEDHSSPASEGGCKKKKSKVLSRNSADDEELTND 289


>sp|O76329|ACTNB_DICDI Interaptin OS=Dictyostelium discoideum GN=abpD
            PE=1 SV=1
          Length = 1738

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 21/87 (24%), Positives = 41/87 (47%)
 Frame = -2

Query: 492  EDEIVAKSDESGQYGNDENSDPWSTGEIKQLRTKWLQQELEEETTNNKEIEXXXXXXXXX 313
            +D+++ +  +  Q  N+E        EI+QL+    QQE+++   +NKEI+         
Sbjct: 1401 KDQLLKQQQQEQQENNNEKEIERLIQEIEQLKQ---QQEIDQSELSNKEIKIQTTQQEFD 1457

Query: 312  XXXXXXSARLSHSRSCHSSYVHNVENE 232
                    +LSH+RS    ++  ++ E
Sbjct: 1458 --------QLSHNRSKDQLHLQQLQQE 1476
tr_hit_id A9TSK9
Definition tr|A9TSK9|A9TSK9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 30
Score (bit) 46.6
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917266|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_E05.
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TSK9|A9TSK9_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   0.001
tr|A9TPH4|A9TPH4_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.006
tr|Q57XD0|Q57XD0_9TRYP Putative uncharacterized protein OS=Trypa...    39   0.25 
tr|Q16IU1|Q16IU1_AEDAE Uncoordinated protein OS=Aedes aegypti GN...    35   2.1  
tr|B6AJL7|B6AJL7_9CRYT Putative uncharacterized protein OS=Crypt...    35   3.6  
tr|B6SKI7|B6SKI7_MAIZE CrcB-like protein OS=Zea mays PE=2 SV=1         34   4.7  
tr|B5CL72|B5CL72_9FIRM Putative uncharacterized protein OS=Rumin...    34   6.2  
tr|B0XGI4|B0XGI4_CULQU Structural maintenance of chromosomes pro...    34   6.2  
tr|A5E2T2|A5E2T2_LODEL Predicted protein OS=Lodderomyces elongis...    33   7.9  

>tr|A9TSK9|A9TSK9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_149918 PE=4 SV=1
          Length = 335

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = -2

Query: 132 LEYVDILAHLTFFGILGVLIRYGSEVLFDD 43
           LEY+  LAHLT FGILGV IRYG  +LF D
Sbjct: 7   LEYISALAHLTTFGILGVCIRYGLRILFSD 36


>tr|A9TPH4|A9TPH4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_148563 PE=4 SV=1
          Length = 341

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = -2

Query: 132 LEYVDILAHLTFFGILGVLIRYGSEVLF 49
           LEYV  LAHLT FGILGV IR+G E+LF
Sbjct: 10  LEYVSALAHLTTFGILGVCIRHGLELLF 37


>tr|Q57XD0|Q57XD0_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.8.2590 PE=4 SV=1
          Length = 545

 Score = 38.5 bits (88), Expect = 0.25
 Identities = 24/109 (22%), Positives = 48/109 (44%)
 Frame = -2

Query: 474 KSDESGQYGNDENSDPWSTGEIKQLRTKWLQQELEEETTNNKEIEXXXXXXXXXXXXXXX 295
           +  + G    + NS P S     +LR  +L++ L   T  NKE+E               
Sbjct: 134 REKQQGPTNENTNSGPGSADAASRLR--FLEEMLLHMTALNKELEMDLTKTKKELREYKQ 191

Query: 294 SARLSHSRSCHSSYVHNVENEDIDTELGSSKREPTRFPLETSKQELKMQ 148
           + + SHSR+ + +   +V   ++D+E G  +     +P+  +++  + Q
Sbjct: 192 AFQRSHSRTAYETPTQSVNARNVDSEWGEIRSRDALYPVARTREAQRRQ 240


>tr|Q16IU1|Q16IU1_AEDAE Uncoordinated protein OS=Aedes aegypti
            GN=AAEL013559 PE=4 SV=1
          Length = 4560

 Score = 35.4 bits (80), Expect = 2.1
 Identities = 23/69 (33%), Positives = 37/69 (53%)
 Frame = -2

Query: 546  KTNFAGLV*SYVMEEAKDEDEIVAKSDESGQYGNDENSDPWSTGEIKQLRTKWLQQELEE 367
            KT   GL    +M+EAK E + V K+  +  YG+DE+S   +     ++R   +  E++E
Sbjct: 1986 KTVEEGLYYKLIMKEAKAELQGVYKAVFTNVYGSDESSAKTTVQCTPKVRKPLVDTEVDE 2045

Query: 366  ETTNNKEIE 340
             TT   E+E
Sbjct: 2046 NTTLTLEVE 2054


>tr|B6AJL7|B6AJL7_9CRYT Putative uncharacterized protein
           OS=Cryptosporidium muris RN66 GN=CMU_021720 PE=4 SV=1
          Length = 2103

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -2

Query: 516 YVMEEAKDEDEIVAKSDESGQYGNDENSDPWSTG--EIKQLRTKWLQQELEEETTNNKEI 343
           Y+ +EA++++E+   +DES  Y N  + D    G  E+K      + +E+EE   N K I
Sbjct: 152 YIQDEAEEDEEL---NDESRVYDNSSSEDDDEDGYDELKDFIVDEIDEEIEEPIYNGKLI 208

Query: 342 E 340
           E
Sbjct: 209 E 209


>tr|B6SKI7|B6SKI7_MAIZE CrcB-like protein OS=Zea mays PE=2 SV=1
          Length = 491

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 180 LETSKQELKMQKCMCFLEYVDILAHLTFFGILGVLIRYGSEVLF-DDCI 37
           L  S  +++  K    L+Y   + HL  FG  GV  RYG + LF  DC+
Sbjct: 147 LADSSTKVEPYKLSLRLDYAAYMIHLAVFGFFGVFTRYGLQKLFGPDCL 195


>tr|B5CL72|B5CL72_9FIRM Putative uncharacterized protein
           OS=Ruminococcus lactaris ATCC 29176 GN=RUMLAC_00192 PE=4
           SV=1
          Length = 593

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +1

Query: 13  ILDSCVTDNTVIKENFRAISDKNPKYSKKCQMC*D----INILEKAH 141
           I +SCVT    ++EN +A+++ NP ++++   C D     +ILEK H
Sbjct: 248 IRESCVTH--FLEENIKAVTEVNPAFARRVSFCTDDVTATDILEKGH 292


>tr|B0XGI4|B0XGI4_CULQU Structural maintenance of chromosomes
           protein 3 OS=Culex quinquefasciatus GN=CpipJ_CPIJ018617
           PE=4 SV=1
          Length = 564

 Score = 33.9 bits (76), Expect = 6.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
 Frame = -2

Query: 486 EIVAKSDESGQYGNDENSDPWSTGEIKQLRTK---------WLQQELEEETTNNKEIE 340
           E+ AK     Q+ + E  D W  GE+K L  +          LQ++L+ + +  KE+E
Sbjct: 228 ELYAKQGRGSQFSSKEERDKWIQGELKSLNKQIKDKITHQSKLQEDLKRDASKQKELE 285


>tr|A5E2T2|A5E2T2_LODEL Predicted protein OS=Lodderomyces
           elongisporus GN=LELG_03919 PE=4 SV=1
          Length = 214

 Score = 33.5 bits (75), Expect = 7.9
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = +3

Query: 87  VFQKMSDVLRYQHTRESTYISASSTPVLKFLKETLLALF*KNLAQYQCLHFPRYVHMRND 266
           +F  +  +    H  ++T +  +  P   + K   L++   N+  Y C++   Y H+R +
Sbjct: 68  IFTHIETLTATTHMAQTTRLLFTLFPSTSYRKSCSLSISNNNIYIYICIYARFYTHVRTE 127

Query: 267 TTENVTILL 293
             +NVT++L
Sbjct: 128 RKKNVTLVL 136