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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917269
Clone id YMU001_000098_E12
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_E12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAGAGAGCCGCAAAGGCTATCAATTTTCTTGCAGAGAGATATTGCTTCAGCTAAGCCACC
ATGCCAGAGGAGGAGAAGAAAGAGGATGACAAGATCATCCTGCAAGTGGACATGCATTGC
TGAGGGATGCAAGGCCAAGGTCAGAAAGGCGCTCAAGGAATTTAAAGGCATAGAAGCGCT
GGATGTGAACATGCAAGACCAGAAGGTGACAATAAAAGGGAAGCTGGATGCCAGAACAGT
GTATGAGACGGTAAAGAAGAAGAGTGGGGAGCGCACCATCTTACTCTACCCCGACCTCTC
CAAAGTCCCCCAGGAGCCCAAGAAAGAGGAGCCAAAGAAAGAGGAGCCCCCGCCCGATCC
TGAAGTAGTTGTGGTGTTGAAAGTT
■■Homology search results ■■ -
sp_hit_id Q8ZCA7
Definition sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia pestis
Align length 57
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917269|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_E12.
         (385 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersini...    31   1.7  
sp|O14618|CCS_HUMAN Copper chaperone for superoxide dismutase OS...    30   2.9  
sp|Q9KPZ7|COPA_VIBCH Copper-exporting P-type ATPase A OS=Vibrio ...    30   3.8  
sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=...    30   3.8  
sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE...    29   6.5  
sp|Q8CN01|COPZ_STAES Copper chaperone copZ OS=Staphylococcus epi...    29   6.5  
sp|Q5HL55|COPZ_STAEQ Copper chaperone copZ OS=Staphylococcus epi...    29   6.5  
sp|Q9WYI2|AROC_THEMA Chorismate synthase OS=Thermotoga maritima ...    29   8.4  

>sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia
           pestis GN=copA PE=3 SV=1
          Length = 961

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +2

Query: 128 CKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERTILLYPDL 298
           C  +V+ AL+  + +   +VN+   KVT  G+ D   + ET+K+   + T    PD+
Sbjct: 17  CAQRVKAALESREDVHHAEVNVHYAKVT--GEADTHALIETIKQTGYQATEAQTPDV 71


>sp|O14618|CCS_HUMAN Copper chaperone for superoxide dismutase
           OS=Homo sapiens GN=CCS PE=1 SV=1
          Length = 274

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 16/58 (27%), Positives = 35/58 (60%)
 Frame = +2

Query: 110 TCIAEGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERTIL 283
           TC  + C   VRK+L+   G++ ++V+++DQ V +   L ++ V + + + +G + +L
Sbjct: 21  TC--QSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEV-QALLEGTGRQAVL 75


>sp|Q9KPZ7|COPA_VIBCH Copper-exporting P-type ATPase A OS=Vibrio
           cholerae GN=copA PE=3 SV=1
          Length = 915

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 110 TCIAEGCKAKVRKALKEFKGIEALDVNMQDQKVTIKG 220
           TC +  C A V KAL   +G+++  VN+ +Q   ++G
Sbjct: 182 TCAS--CVASVEKALLSVEGVQSAQVNLTEQSALVRG 216


>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone
           OS=Yarrowia lipolytica GN=CCS1 PE=3 SV=1
          Length = 234

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKG 220
           E C   V++AL   +GIE++D  + DQ +++ G
Sbjct: 14  ESCCDSVKQALANVQGIESVDCKLVDQLISVTG 46


>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
          Length = 18141

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 143   RKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGER 274
             +K   EF  +E + +  ++QK T    LDA  V +TVK K  +R
Sbjct: 14829 KKLKPEFAALEPIKIERKEQKPTKVTILDATDVPKTVKLKPSKR 14872


>sp|Q8CN01|COPZ_STAES Copper chaperone copZ OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=copZ PE=3 SV=1
          Length = 68

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGER 274
           E C+  V  AL +  G+ + +VN+ +  V ++   D++  +E +K+   E+
Sbjct: 14  EHCRNAVESALAKLNGVSSAEVNLDENHVRVEYN-DSKVTFENMKEAIEEQ 63


>sp|Q5HL55|COPZ_STAEQ Copper chaperone copZ OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=copZ PE=3
           SV=1
          Length = 68

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGER 274
           E C+  V  AL +  G+ + +VN+ +  V ++   D++  +E +K+   E+
Sbjct: 14  EHCRNAVESALAKLNGVSSAEVNLDENHVRVEYN-DSKVTFENMKEAIEEQ 63


>sp|Q9WYI2|AROC_THEMA Chorismate synthase OS=Thermotoga maritima
           GN=aroC PE=3 SV=1
          Length = 376

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +2

Query: 95  SSCKWTCIAEGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTV---YETVKKKS 265
           SS +WT       + ++  LKEF GIE L        VT  G ++AR +   +E +K++ 
Sbjct: 116 SSARWTVALTAAGSLLKSLLKEF-GIEVLGF------VTRLGNVEARDIPGDFEELKRRR 168

Query: 266 GERTILLYPD 295
            E +++  PD
Sbjct: 169 DE-SVVFCPD 177
tr_hit_id B6ST82
Definition tr|B6ST82|B6ST82_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 52
Score (bit) 53.5
E-value 5.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917269|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_E12.
         (385 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6ST82|B6ST82_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|B6SQL3|B6SQL3_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|B6SHX8|B6SHX8_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|Q9SE04|Q9SE04_ORYSA Copper chaperone homolog CCH OS=Oryza sat...    50   4e-05
tr|Q6H759|Q6H759_ORYSJ Os02g0530100 protein OS=Oryza sativa subs...    50   4e-05
tr|Q5QL92|Q5QL92_ORYSJ cDNA clone:001-016-H06, full insert seque...    50   4e-05
tr|B7FJ81|B7FJ81_MEDTR Putative uncharacterized protein OS=Medic...    50   4e-05
tr|A2X5L0|A2X5L0_ORYSI Putative uncharacterized protein OS=Oryza...    50   4e-05
tr|A7R7L1|A7R7L1_VITVI Chromosome chr8 scaffold_1853, whole geno...    50   6e-05
tr|Q7XWS9|Q7XWS9_ORYSJ Os04g0244800 protein OS=Oryza sativa subs...    50   7e-05
tr|Q01HL4|Q01HL4_ORYSA H0211F06-OSIGBa0153M17.4 protein OS=Oryza...    50   7e-05
tr|A2XR05|A2XR05_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|Q8GTD3|Q8GTD3_HORVD Farnesylated protein 1 OS=Hordeum vulgare...    49   1e-04
tr|Q70DK1|Q70DK1_HORVD Chopper chaperone OS=Hordeum vulgare var....    49   1e-04
tr|A9NJS2|A9NJS2_PICSI Putative uncharacterized protein OS=Picea...    49   1e-04
tr|Q01LD6|Q01LD6_ORYSA OSIGBa0132D06.1 protein (OSIGBa0096P03.8 ...    49   1e-04
tr|B6U4D0|B6U4D0_MAIZE ATFP3 OS=Zea mays PE=2 SV=1                     49   1e-04
tr|A7QUV4|A7QUV4_VITVI Chromosome chr1 scaffold_180, whole genom...    49   1e-04
tr|A7QDL0|A7QDL0_VITVI Chromosome chr10 scaffold_81, whole genom...    49   1e-04
tr|A5ARF6|A5ARF6_VITVI Putative uncharacterized protein OS=Vitis...    49   1e-04
tr|O82089|O82089_ARATH Copper homeostasis factor (AT3g56240/F18O...    49   2e-04
tr|Q7XKQ7|Q7XKQ7_ORYSJ Os04g0390100 protein OS=Oryza sativa subs...    48   2e-04
tr|A7NV27|A7NV27_VITVI Chromosome chr18 scaffold_1, whole genome...    48   2e-04
tr|A2XST7|A2XST7_ORYSI Putative uncharacterized protein OS=Oryza...    48   2e-04
tr|Q9C7U6|Q9C7U6_ARATH Copper homeostasis factor, putative; 2714...    48   3e-04
tr|Q94BT9|Q94BT9_ARATH At1g66240/T6J19_6 OS=Arabidopsis thaliana...    48   3e-04
tr|Q5JLS9|Q5JLS9_ORYSJ Copper-binding protein-like OS=Oryza sati...    48   3e-04
tr|Q0JJ65|Q0JJ65_ORYSJ Os01g0758000 protein (Putative uncharacte...    48   3e-04
tr|A7PL53|A7PL53_VITVI Chromosome chr7 scaffold_20, whole genome...    48   3e-04
tr|A2WV85|A2WV85_ORYSI Putative uncharacterized protein OS=Oryza...    48   3e-04

>tr|B6ST82|B6ST82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 112

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 23/52 (44%), Positives = 37/52 (71%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           EGC   VR+ L + +G+E  D+++++QKVT+KG +    V++TV  KSG+RT
Sbjct: 16  EGCAGAVRRVLSKMEGVETFDIDLKEQKVTVKGNVKPEDVFQTV-SKSGKRT 66


>tr|B6SQL3|B6SQL3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 112

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 23/52 (44%), Positives = 37/52 (71%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           EGC   VR+ L + +G+E  D+++++QKVT+KG +    V++TV  KSG+RT
Sbjct: 16  EGCAGAVRRVLSKMEGVETFDIDLKEQKVTVKGNVKPEDVFQTV-SKSGKRT 66


>tr|B6SHX8|B6SHX8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 111

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 23/52 (44%), Positives = 37/52 (71%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           EGC   VR+ L + +G+E  D+++++QKVT+KG +    V++TV  KSG+RT
Sbjct: 16  EGCAGAVRRVLSKMEGVETFDIDLKEQKVTVKGNVKPEDVFQTV-SKSGKRT 66


>tr|Q9SE04|Q9SE04_ORYSA Copper chaperone homolog CCH OS=Oryza sativa
           PE=2 SV=1
          Length = 132

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 36/52 (69%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           +GC   VR+ L + +G+E  D++M+ QKVT+KG +    V++TV  K+G++T
Sbjct: 15  QGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTV-SKTGKKT 65


>tr|Q6H759|Q6H759_ORYSJ Os02g0530100 protein OS=Oryza sativa subsp.
           japonica GN=P0476H10.30-1 PE=4 SV=1
          Length = 132

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 36/52 (69%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           +GC   VR+ L + +G+E  D++M+ QKVT+KG +    V++TV  K+G++T
Sbjct: 15  QGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTV-SKTGKKT 65


>tr|Q5QL92|Q5QL92_ORYSJ cDNA clone:001-016-H06, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0476H10.30-2 PE=2
           SV=1
          Length = 252

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 36/52 (69%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           +GC   VR+ L + +G+E  D++M+ QKVT+KG +    V++TV  K+G++T
Sbjct: 135 QGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTV-SKTGKKT 185


>tr|B7FJ81|B7FJ81_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 126

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 22/58 (37%), Positives = 41/58 (70%)
 Frame = +2

Query: 104 KWTCIAEGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           K +C   GC   V + L++ +G+E+ D++M++QKVT+KG +  + V++TV  K+G++T
Sbjct: 11  KMSC--SGCSGAVNRVLEKMEGVESFDIDMKEQKVTVKGNVKPQDVFDTV-SKTGKKT 65


>tr|A2X5L0|A2X5L0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07492 PE=4 SV=1
          Length = 132

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 36/52 (69%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERT 277
           +GC   VR+ L + +G+E  D++M+ QKVT+KG +    V++TV  K+G++T
Sbjct: 15  QGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTV-SKTGKKT 65


>tr|A7R7L1|A7R7L1_VITVI Chromosome chr8 scaffold_1853, whole genome
           shotgun sequence (Fragment) OS=Vitis vinifera
           GN=GSVIVT00010080001 PE=4 SV=1
          Length = 132

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 20/57 (35%), Positives = 36/57 (63%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGERTILLYP 292
           EGC+ ++R+A+ +  G++ LD++M  QKVT+ G +D R V + V++   +     YP
Sbjct: 11  EGCEKRIRRAISKLSGVDHLDIDMDKQKVTVTGYVDQRQVLKVVRRTGRKAEFWPYP 67


>tr|Q7XWS9|Q7XWS9_ORYSJ Os04g0244800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0091C12.3 PE=2 SV=2
          Length = 155

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 21/51 (41%), Positives = 35/51 (68%)
 Frame = +2

Query: 122 EGCKAKVRKALKEFKGIEALDVNMQDQKVTIKGKLDARTVYETVKKKSGER 274
           EGC+ K++KAL++ KG+ +++V  +  KVT+ G +DA  V   V  K+G+R
Sbjct: 38  EGCERKIKKALEDMKGVSSVEVTAKQNKVTVTGYVDAGKVMRRVAYKTGKR 88