BP917270
Clone id YMU001_000098_F01
Library
Length 450
Definition Adiantum capillus-veneris hy2 mRNA for phytochromobilin synthase, partial cds
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATTCGCGGCCGCGAATTCTTGATCGAAACATTCTGAATTTCCCACAATCAGGACACAATC
ATGCCTATTTCTATTCAGCACATCATAGTAGTTTGTGCTGTCATATATTGAAGAAAAGGC
AGTATATTTTTCATTTTCTATACAAACTTATCATACAAGATTCCTACTGGAGTCAGATTT
GCTTGAACATTACAAAACTTGCTGTGTCATTTTCCAAATCCGTCTAGTTTACAAGCTCAT
TGTGAAATTCCCATGCTCATCCCAGGGACGATGTATGCATGACTTGCCTACTACGCTTCG
CTCCTTCCTTATGCTTCCATCTGCACAACTGTATTCAGGAAAGTAGTCCAAAAATTTCTC
TGCACCTAAGGTTGTGACTCCATTGAACAAAAAATCATGGATGTACATCTCACACCAAGC
TTGTCCAAACAACCGATGCAAAAGCGGACG
■■Homology search results ■■ -
sp_hit_id Q9SR43
Definition sp|Q9SR43|PFBS_ARATH Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana
Align length 67
Score (bit) 77.0
E-value 3.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917270|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F01.
(428 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SR43|PFBS_ARATH Phytochromobilin:ferredoxin oxidoreductase,... 77 3e-14
sp|Q8R1C0|KCNC4_MOUSE Potassium voltage-gated channel subfamily ... 33 0.48
sp|Q63734|KCNC4_RAT Potassium voltage-gated channel subfamily C ... 33 0.63
sp|Q9K4U5|PEBB_PROMA Phycoerythrobilin:ferredoxin oxidoreductase... 30 4.1
sp|Q7NL65|PEBB_GLOVI Phycoerythrobilin:ferredoxin oxidoreductase... 30 5.3
sp|Q93TM8|PEBB_NOSP7 Phycoerythrobilin:ferredoxin oxidoreductase... 29 7.0
sp|Q6C8M8|ATG26_YARLI Sterol 3-beta-glucosyltransferase OS=Yarro... 29 7.0
sp|Q9PWB0|CER1_CHICK Cerberus OS=Gallus gallus GN=CER1 PE=2 SV=1 29 9.1

>sp|Q9SR43|PFBS_ARATH Phytochromobilin:ferredoxin oxidoreductase,
chloroplastic OS=Arabidopsis thaliana GN=HY2 PE=2 SV=1
Length = 329

Score = 77.0 bits (188), Expect = 3e-14
Identities = 35/67 (52%), Positives = 45/67 (67%)
Frame = -1

Query: 422 LLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHRP 243
LL RL G+A + + DFLFNGV LG + F+DYFPEY DG++ +RS++GKS RP
Sbjct: 261 LLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRP 320

Query: 242 WDEHGNF 222
WD G F
Sbjct: 321 WDLTGQF 327


>sp|Q8R1C0|KCNC4_MOUSE Potassium voltage-gated channel subfamily C
member 4 OS=Mus musculus GN=Kcnc4 PE=2 SV=1
Length = 628

Score = 33.1 bits (74), Expect = 0.48
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -1

Query: 314 EYSCADGSIRKERSVVGKSCI 252
+Y+CADGS+RKE +V K+C+
Sbjct: 600 DYACADGSVRKEGNVEPKACV 620


>sp|Q63734|KCNC4_RAT Potassium voltage-gated channel subfamily C
member 4 OS=Rattus norvegicus GN=Kcnc4 PE=1 SV=1
Length = 625

Score = 32.7 bits (73), Expect = 0.63
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = -1

Query: 314 EYSCADGSIRKERSVVGKSCI 252
+Y+CADGS++KE SV K+C+
Sbjct: 597 DYACADGSVQKEGSVEPKACV 617


>sp|Q9K4U5|PEBB_PROMA Phycoerythrobilin:ferredoxin oxidoreductase
OS=Prochlorococcus marinus GN=pebB PE=3 SV=1
Length = 257

Score = 30.0 bits (66), Expect = 4.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1

Query: 428 RPLLHRLFGQAWCEMYIHDFLFN 360
R +L R +G+ W E YIH LFN
Sbjct: 234 RAMLCRFYGKEWTEDYIHKVLFN 256


>sp|Q7NL65|PEBB_GLOVI Phycoerythrobilin:ferredoxin oxidoreductase
OS=Gloeobacter violaceus GN=pebB PE=3 SV=1
Length = 245

Score = 29.6 bits (65), Expect = 5.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1

Query: 428 RPLLHRLFGQAWCEMYIHDFLFN 360
R + R +G W E YIH FLF+
Sbjct: 213 RGMFRRFYGPEWTEEYIHGFLFD 235


>sp|Q93TM8|PEBB_NOSP7 Phycoerythrobilin:ferredoxin oxidoreductase
OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=pebB PE=3 SV=1
Length = 255

Score = 29.3 bits (64), Expect = 7.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1

Query: 428 RPLLHRLFGQAWCEMYIHDFLFN 360
R + R +G W E YIH FLF+
Sbjct: 224 RGMFKRFYGAEWTEEYIHGFLFD 246


>sp|Q6C8M8|ATG26_YARLI Sterol 3-beta-glucosyltransferase OS=Yarrowia
lipolytica GN=ATG26 PE=3 SV=3
Length = 1456

Score = 29.3 bits (64), Expect = 7.0
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2

Query: 26 SGHNHAYFYSAHHSS 70
SGH+H +F+SAHH S
Sbjct: 454 SGHHHHFFHSAHHES 468


>sp|Q9PWB0|CER1_CHICK Cerberus OS=Gallus gallus GN=CER1 PE=2 SV=1
Length = 272

Score = 28.9 bits (63), Expect = 9.1
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1

Query: 280 SFLMLPSAQLYSGK*SKNFSAPKVVTPLNKKSWMYISHQ 396
S +LP+A+LY+ + + ++APK ++P+ S Y S++
Sbjct: 87 SRFILPNAELYAHQDLRTWAAPKEISPVENFSPSYYSNK 125


tr_hit_id Q0WYD6
Definition tr|Q0WYD6|Q0WYD6_ADICA Phytochromobilin synthase OS=Adiantum capillus-veneris
Align length 73
Score (bit) 162.0
E-value 8.0e-39
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917270|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F01.
(428 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0WYD6|Q0WYD6_ADICA Phytochromobilin synthase OS=Adiantum cap... 162 8e-39
tr|Q0WYD4|Q0WYD4_PHYPA Phytochromobilin synthase OS=Physcomitrel... 93 6e-18
tr|A9RF24|A9RF24_PHYPA Predicted protein OS=Physcomitrella paten... 93 6e-18
tr|Q5JKX8|Q5JKX8_ORYSJ cDNA clone:J033037A10, full insert sequen... 83 8e-15
tr|Q5JKX7|Q5JKX7_ORYSJ cDNA clone:006-212-D10, full insert seque... 83 8e-15
tr|A3A1I7|A3A1I7_ORYSJ Putative uncharacterized protein OS=Oryza... 83 8e-15
tr|B8A959|B8A959_ORYSI Putative uncharacterized protein OS=Oryza... 82 1e-14
tr|Q3E7L0|Q3E7L0_ARATH Uncharacterized protein At3g09150.3 OS=Ar... 77 4e-13
tr|A7PQX7|A7PQX7_VITVI Chromosome chr6 scaffold_25, whole genome... 77 6e-13
tr|Q588D6|Q588D6_SOLLC Phytochromobilin synthase OS=Solanum lyco... 76 1e-12
tr|Q6E5A3|Q6E5A3_MAIZE Phycoerythrobilin ferredoxin oxidoreducta... 75 2e-12
tr|B4FQZ8|B4FQZ8_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12
tr|B4FHE6|B4FHE6_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12
tr|B7FK49|B7FK49_MEDTR Putative uncharacterized protein OS=Medic... 61 2e-08
tr|Q9S7M8|Q9S7M8_ORYSJ Putative uncharacterized protein P0711E10... 38 0.29
tr|Q5NBS6|Q5NBS6_ORYSJ Putative uncharacterized protein P0705D01... 38 0.29
tr|A2WN08|A2WN08_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.29
tr|A2WN03|A2WN03_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.29
tr|Q4C972|Q4C972_CROWT Ferredoxin-dependent bilin reductase OS=C... 35 2.5
tr|Q3TZ61|Q3TZ61_MOUSE Putative uncharacterized protein OS=Mus m... 33 7.2
tr|B7K6K7|B7K6K7_SYNP8 Ferredoxin-dependent bilin reductase OS=S... 33 7.2
tr|B7KLX2|B7KLX2_9CHRO Ferredoxin-dependent bilin reductase OS=C... 33 9.4

>tr|Q0WYD6|Q0WYD6_ADICA Phytochromobilin synthase OS=Adiantum
capillus-veneris GN=hy2 PE=2 SV=1
Length = 359

Score = 162 bits (410), Expect = 8e-39
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = -1

Query: 428 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 249
RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH
Sbjct: 287 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 346

Query: 248 RPWDEHGNFTMSL 210
RPWDEHGNFTMSL
Sbjct: 347 RPWDEHGNFTMSL 359


>tr|Q0WYD4|Q0WYD4_PHYPA Phytochromobilin synthase OS=Physcomitrella
patens GN=HY2 PE=2 SV=1
Length = 405

Score = 93.2 bits (230), Expect = 6e-18
Identities = 45/73 (61%), Positives = 52/73 (71%)
Frame = -1

Query: 428 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 249
R LL RLFG+ CE YI +FLFNGV TLG + FLDYFPEY DGSI K+RSVVGK+
Sbjct: 330 RYLLMRLFGEPLCERYITEFLFNGVNTLGTKTFLDYFPEYRGVDGSIIKQRSVVGKAYAE 389

Query: 248 RPWDEHGNFTMSL 210
RPW++ G F L
Sbjct: 390 RPWNKDGTFAPML 402


>tr|A9RF24|A9RF24_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=HY2 PE=4 SV=1
Length = 405

Score = 93.2 bits (230), Expect = 6e-18
Identities = 45/73 (61%), Positives = 52/73 (71%)
Frame = -1

Query: 428 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 249
R LL RLFG+ CE YI +FLFNGV TLG + FLDYFPEY DGSI K+RSVVGK+
Sbjct: 330 RYLLMRLFGEPLCERYITEFLFNGVNTLGTKTFLDYFPEYRGVDGSIIKQRSVVGKAYAE 389

Query: 248 RPWDEHGNFTMSL 210
RPW++ G F L
Sbjct: 390 RPWNKDGTFAPML 402


>tr|Q5JKX8|Q5JKX8_ORYSJ cDNA clone:J033037A10, full insert sequence
OS=Oryza sativa subsp. japonica GN=B1147A04.17-2 PE=2
SV=1
Length = 301

Score = 82.8 bits (203), Expect = 8e-15
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1

Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246
PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R
Sbjct: 227 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMIGKSFETR 286

Query: 245 PWDEHGNF 222
PWD +G F
Sbjct: 287 PWDANGEF 294


>tr|Q5JKX7|Q5JKX7_ORYSJ cDNA clone:006-212-D10, full insert sequence
OS=Oryza sativa subsp. japonica GN=B1147A04.17-1 PE=2
SV=1
Length = 185

Score = 82.8 bits (203), Expect = 8e-15
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1

Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246
PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R
Sbjct: 111 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMIGKSFETR 170

Query: 245 PWDEHGNF 222
PWD +G F
Sbjct: 171 PWDANGEF 178


>tr|A3A1I7|A3A1I7_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_004659 PE=4 SV=1
Length = 546

Score = 82.8 bits (203), Expect = 8e-15
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1

Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246
PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R
Sbjct: 472 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMIGKSFETR 531

Query: 245 PWDEHGNF 222
PWD +G F
Sbjct: 532 PWDANGEF 539


>tr|B8A959|B8A959_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05195 PE=4 SV=1
Length = 301

Score = 82.0 bits (201), Expect = 1e-14
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -1

Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246
PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R
Sbjct: 227 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMMGKSFETR 286

Query: 245 PWDEHGNF 222
PWD +G F
Sbjct: 287 PWDANGEF 294


>tr|Q3E7L0|Q3E7L0_ARATH Uncharacterized protein At3g09150.3
OS=Arabidopsis thaliana GN=At3g09150 PE=4 SV=1
Length = 250

Score = 77.0 bits (188), Expect = 4e-13
Identities = 35/67 (52%), Positives = 45/67 (67%)
Frame = -1

Query: 422 LLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHRP 243
LL RL G+A + + DFLFNGV LG + F+DYFPEY DG++ +RS++GKS RP
Sbjct: 182 LLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRP 241

Query: 242 WDEHGNF 222
WD G F
Sbjct: 242 WDLTGQF 248


>tr|A7PQX7|A7PQX7_VITVI Chromosome chr6 scaffold_25, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022237001
PE=4 SV=1
Length = 424

Score = 76.6 bits (187), Expect = 6e-13
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = -1

Query: 422 LLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHRP 243
+L +L G++ + + FLFNGV LG + FLDYFPEY C +G+I +RS++GKS RP
Sbjct: 307 ILKKLIGESLSKDLVRSFLFNGVDELGTKTFLDYFPEYCCENGTINDKRSIIGKSFESRP 366

Query: 242 WDEHGNF 222
WD G F
Sbjct: 367 WDTSGEF 373


>tr|Q588D6|Q588D6_SOLLC Phytochromobilin synthase OS=Solanum
lycopersicum GN=AUREA PE=2 SV=1
Length = 342

Score = 75.9 bits (185), Expect = 1e-12
Identities = 34/67 (50%), Positives = 45/67 (67%)
Frame = -1

Query: 422 LLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHRP 243
+L RL G+ + I FLFNGV LG + FLDYFPEY C DG + ++RS++GKS +RP
Sbjct: 268 VLKRLIGEDLAKDVITKFLFNGVNELGNKTFLDYFPEYRCEDGKVNEKRSMIGKSFENRP 327

Query: 242 WDEHGNF 222
W+ G F
Sbjct: 328 WNARGEF 334