BP917270 |
Clone id |
YMU001_000098_F01 |
Library |
YMU01 |
Length |
450 |
Definition |
Adiantum capillus-veneris hy2 mRNA for phytochromobilin synthase, partial cds |
Accession |
BP917270 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
ATTCGCGGCCGCGAATTCTTGATCGAAACATTCTGAATTTCCCACAATCAGGACACAATC ATGCCTATTTCTATTCAGCACATCATAGTAGTTTGTGCTGTCATATATTGAAGAAAAGGC AGTATATTTTTCATTTTCTATACAAACTTATCATACAAGATTCCTACTGGAGTCAGATTT GCTTGAACATTACAAAACTTGCTGTGTCATTTTCCAAATCCGTCTAGTTTACAAGCTCAT TGTGAAATTCCCATGCTCATCCCAGGGACGATGTATGCATGACTTGCCTACTACGCTTCG CTCCTTCCTTATGCTTCCATCTGCACAACTGTATTCAGGAAAGTAGTCCAAAAATTTCTC TGCACCTAAGGTTGTGACTCCATTGAACAAAAAATCATGGATGTACATCTCACACCAAGC TTGTCCAAACAACCGATGCAAAAGCGGACG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SR43 |
Definition |
sp|Q9SR43|PFBS_ARATH Phytochromobilin:ferredoxin oxidoreductase, chloroplastic OS=Arabidopsis thaliana |
Align length |
67 |
Score (bit) |
77.0 |
E-value |
3.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0WYD6 |
Definition |
tr|Q0WYD6|Q0WYD6_ADICA Phytochromobilin synthase OS=Adiantum capillus-veneris |
Align length |
73 |
Score (bit) |
162.0 |
E-value |
8.0e-39 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917270|Adiantum capillus-veneris mRNA, clone: YMU001_000098_F01. (428 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0WYD6|Q0WYD6_ADICA Phytochromobilin synthase OS=Adiantum cap... 162 8e-39 tr|Q0WYD4|Q0WYD4_PHYPA Phytochromobilin synthase OS=Physcomitrel... 93 6e-18 tr|A9RF24|A9RF24_PHYPA Predicted protein OS=Physcomitrella paten... 93 6e-18 tr|Q5JKX8|Q5JKX8_ORYSJ cDNA clone:J033037A10, full insert sequen... 83 8e-15 tr|Q5JKX7|Q5JKX7_ORYSJ cDNA clone:006-212-D10, full insert seque... 83 8e-15 tr|A3A1I7|A3A1I7_ORYSJ Putative uncharacterized protein OS=Oryza... 83 8e-15 tr|B8A959|B8A959_ORYSI Putative uncharacterized protein OS=Oryza... 82 1e-14 tr|Q3E7L0|Q3E7L0_ARATH Uncharacterized protein At3g09150.3 OS=Ar... 77 4e-13 tr|A7PQX7|A7PQX7_VITVI Chromosome chr6 scaffold_25, whole genome... 77 6e-13 tr|Q588D6|Q588D6_SOLLC Phytochromobilin synthase OS=Solanum lyco... 76 1e-12 tr|Q6E5A3|Q6E5A3_MAIZE Phycoerythrobilin ferredoxin oxidoreducta... 75 2e-12 tr|B4FQZ8|B4FQZ8_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12 tr|B4FHE6|B4FHE6_MAIZE Putative uncharacterized protein OS=Zea m... 75 2e-12 tr|B7FK49|B7FK49_MEDTR Putative uncharacterized protein OS=Medic... 61 2e-08 tr|Q9S7M8|Q9S7M8_ORYSJ Putative uncharacterized protein P0711E10... 38 0.29 tr|Q5NBS6|Q5NBS6_ORYSJ Putative uncharacterized protein P0705D01... 38 0.29 tr|A2WN08|A2WN08_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.29 tr|A2WN03|A2WN03_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.29 tr|Q4C972|Q4C972_CROWT Ferredoxin-dependent bilin reductase OS=C... 35 2.5 tr|Q3TZ61|Q3TZ61_MOUSE Putative uncharacterized protein OS=Mus m... 33 7.2 tr|B7K6K7|B7K6K7_SYNP8 Ferredoxin-dependent bilin reductase OS=S... 33 7.2 tr|B7KLX2|B7KLX2_9CHRO Ferredoxin-dependent bilin reductase OS=C... 33 9.4
>tr|Q0WYD6|Q0WYD6_ADICA Phytochromobilin synthase OS=Adiantum capillus-veneris GN=hy2 PE=2 SV=1 Length = 359
Score = 162 bits (410), Expect = 8e-39 Identities = 73/73 (100%), Positives = 73/73 (100%) Frame = -1
Query: 428 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 249 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH Sbjct: 287 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 346
Query: 248 RPWDEHGNFTMSL 210 RPWDEHGNFTMSL Sbjct: 347 RPWDEHGNFTMSL 359
>tr|Q0WYD4|Q0WYD4_PHYPA Phytochromobilin synthase OS=Physcomitrella patens GN=HY2 PE=2 SV=1 Length = 405
Score = 93.2 bits (230), Expect = 6e-18 Identities = 45/73 (61%), Positives = 52/73 (71%) Frame = -1
Query: 428 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 249 R LL RLFG+ CE YI +FLFNGV TLG + FLDYFPEY DGSI K+RSVVGK+ Sbjct: 330 RYLLMRLFGEPLCERYITEFLFNGVNTLGTKTFLDYFPEYRGVDGSIIKQRSVVGKAYAE 389
Query: 248 RPWDEHGNFTMSL 210 RPW++ G F L Sbjct: 390 RPWNKDGTFAPML 402
>tr|A9RF24|A9RF24_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=HY2 PE=4 SV=1 Length = 405
Score = 93.2 bits (230), Expect = 6e-18 Identities = 45/73 (61%), Positives = 52/73 (71%) Frame = -1
Query: 428 RPLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIH 249 R LL RLFG+ CE YI +FLFNGV TLG + FLDYFPEY DGSI K+RSVVGK+ Sbjct: 330 RYLLMRLFGEPLCERYITEFLFNGVNTLGTKTFLDYFPEYRGVDGSIIKQRSVVGKAYAE 389
Query: 248 RPWDEHGNFTMSL 210 RPW++ G F L Sbjct: 390 RPWNKDGTFAPML 402
>tr|Q5JKX8|Q5JKX8_ORYSJ cDNA clone:J033037A10, full insert sequence OS=Oryza sativa subsp. japonica GN=B1147A04.17-2 PE=2 SV=1 Length = 301
Score = 82.8 bits (203), Expect = 8e-15 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = -1
Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246 PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R Sbjct: 227 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMIGKSFETR 286
Query: 245 PWDEHGNF 222 PWD +G F Sbjct: 287 PWDANGEF 294
>tr|Q5JKX7|Q5JKX7_ORYSJ cDNA clone:006-212-D10, full insert sequence OS=Oryza sativa subsp. japonica GN=B1147A04.17-1 PE=2 SV=1 Length = 185
Score = 82.8 bits (203), Expect = 8e-15 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = -1
Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246 PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R Sbjct: 111 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMIGKSFETR 170
Query: 245 PWDEHGNF 222 PWD +G F Sbjct: 171 PWDANGEF 178
>tr|A3A1I7|A3A1I7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_004659 PE=4 SV=1 Length = 546
Score = 82.8 bits (203), Expect = 8e-15 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = -1
Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246 PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R Sbjct: 472 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMIGKSFETR 531
Query: 245 PWDEHGNF 222 PWD +G F Sbjct: 532 PWDANGEF 539
>tr|B8A959|B8A959_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05195 PE=4 SV=1 Length = 301
Score = 82.0 bits (201), Expect = 1e-14 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = -1
Query: 425 PLLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHR 246 PLL +L G++ E + +FLF GV TLG + FLDYFPEY+ DGS+ K+RS++GKS R Sbjct: 227 PLLKKLIGESRAEDLVMEFLFEGVNTLGTKSFLDYFPEYARDDGSVNKKRSMMGKSFETR 286
Query: 245 PWDEHGNF 222 PWD +G F Sbjct: 287 PWDANGEF 294
>tr|Q3E7L0|Q3E7L0_ARATH Uncharacterized protein At3g09150.3 OS=Arabidopsis thaliana GN=At3g09150 PE=4 SV=1 Length = 250
Score = 77.0 bits (188), Expect = 4e-13 Identities = 35/67 (52%), Positives = 45/67 (67%) Frame = -1
Query: 422 LLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHRP 243 LL RL G+A + + DFLFNGV LG + F+DYFPEY DG++ +RS++GKS RP Sbjct: 182 LLKRLVGEAKAKELLRDFLFNGVDELGTKTFIDYFPEYQTEDGTVSDKRSIIGKSYETRP 241
Query: 242 WDEHGNF 222 WD G F Sbjct: 242 WDLTGQF 248
>tr|A7PQX7|A7PQX7_VITVI Chromosome chr6 scaffold_25, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022237001 PE=4 SV=1 Length = 424
Score = 76.6 bits (187), Expect = 6e-13 Identities = 33/67 (49%), Positives = 45/67 (67%) Frame = -1
Query: 422 LLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHRP 243 +L +L G++ + + FLFNGV LG + FLDYFPEY C +G+I +RS++GKS RP Sbjct: 307 ILKKLIGESLSKDLVRSFLFNGVDELGTKTFLDYFPEYCCENGTINDKRSIIGKSFESRP 366
Query: 242 WDEHGNF 222 WD G F Sbjct: 367 WDTSGEF 373
>tr|Q588D6|Q588D6_SOLLC Phytochromobilin synthase OS=Solanum lycopersicum GN=AUREA PE=2 SV=1 Length = 342
Score = 75.9 bits (185), Expect = 1e-12 Identities = 34/67 (50%), Positives = 45/67 (67%) Frame = -1
Query: 422 LLHRLFGQAWCEMYIHDFLFNGVTTLGAEKFLDYFPEYSCADGSIRKERSVVGKSCIHRP 243 +L RL G+ + I FLFNGV LG + FLDYFPEY C DG + ++RS++GKS +RP Sbjct: 268 VLKRLIGEDLAKDVITKFLFNGVNELGNKTFLDYFPEYRCEDGKVNEKRSMIGKSFENRP 327
Query: 242 WDEHGNF 222 W+ G F Sbjct: 328 WNARGEF 334
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