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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917272
Clone id YMU001_000098_F03
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGTGCCAACATAGAAAAGATGTGTTTCATTGCACACAAGTAATAACTTCTTTAATCGAT
GCTGCCACCAAGCATGTCCCCAAATCAATTCTCGTATGAAATTCCTTGGTTAATTTGGAT
CGCCACTTGACAACCTTGCCATCCCTATATCTTGGTCGAAAGGCACTCGGAACTCTATTT
GCATCTCGAATCCCCCCATTCAGAACTACACCTCTTGCTCCATGTTGCTAATGAAGCACA
AATCCATTAGCTTGTAGTTGTTCTGCCTCATATGGCACAAGATTAGTGCCCTCAACGACA
CTCCAAATGCCTAGTGCAGGTCCGGGTGGTCCCACCACCATCTCATGAATTTTCAATCTG
TGCAAATTACTAGCATTGCAAAACCAAATATAACCCTCTACTATCCCC
■■Homology search results ■■ -
sp_hit_id Q2JNM6
Definition sp|Q2JNM6|GLGA1_SYNJB Glycogen synthase 1 OS=Synechococcus sp.
Align length 24
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917272|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F03.
         (408 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2JNM6|GLGA1_SYNJB Glycogen synthase 1 OS=Synechococcus sp. G...    33   0.44 
sp|Q2JSZ9|GLGA1_SYNJA Glycogen synthase 1 OS=Synechococcus sp. (...    33   0.44 
sp|P19823|ITIH2_HUMAN Inter-alpha-trypsin inhibitor heavy chain ...    33   0.59 
sp|P24014|SLIT_DROME Protein slit OS=Drosophila melanogaster GN=...    32   0.77 
sp|Q91678|GAT6A_XENLA GATA-binding factor 6-A OS=Xenopus laevis ...    30   3.8  
sp|P19938|DAAA_BACYM D-alanine aminotransferase OS=Bacillus sp. ...    30   4.8  
sp|P70005|GAT6B_XENLA GATA-binding factor 6-B OS=Xenopus laevis ...    29   6.5  
sp|P09095|TYCA_BREPA Tyrocidine synthetase 1 OS=Brevibacillus pa...    29   8.2  

>sp|Q2JNM6|GLGA1_SYNJB Glycogen synthase 1 OS=Synechococcus sp.
           GN=glgA1 PE=3 SV=1
          Length = 491

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  HTSNNFFNRCCHQACPQINSRMKF 104
           H+ +NFFNR C+  CP  N R  F
Sbjct: 91  HSGDNFFNRGCYYGCPDDNMRFAF 114


>sp|Q2JSZ9|GLGA1_SYNJA Glycogen synthase 1 OS=Synechococcus sp.
           (strain JA-3-3Ab) GN=glgA1 PE=3 SV=1
          Length = 491

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  HTSNNFFNRCCHQACPQINSRMKF 104
           H+ +NFFNR C+  CP  N R  F
Sbjct: 91  HSGDNFFNRGCYYGCPDDNMRFAF 114


>sp|P19823|ITIH2_HUMAN Inter-alpha-trypsin inhibitor heavy chain H2
           OS=Homo sapiens GN=ITIH2 PE=1 SV=1
          Length = 946

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = +1

Query: 61  AATKHVPKSILV*NSLVNLDRHLTT-LPSLYLGRKALGTLFASRIPPFRTTPLAPCC**S 237
           AA + + +SIL     ++LD H+ T L SL +  +A      +  PP             
Sbjct: 603 AAKRRITRSILQ----MSLDHHIVTPLTSLVIENEAGDERMLADAPP------------- 645

Query: 238 TNPLACSCSASYGTRLVPSTTLQMPSAGPGGPTTIS*IFNLCKLLALQNQI*PSTIP 408
            +P  CS +  YG+++VP +T   PS     PT +        +LA  +Q+  ST P
Sbjct: 646 QDPSCCSGALYYGSKVVPDST---PSWANPSPTPV------ISMLAQGSQVLESTPP 693


>sp|P24014|SLIT_DROME Protein slit OS=Drosophila melanogaster GN=sli
           PE=1 SV=2
          Length = 1504

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
 Frame = +1

Query: 37  QVITSLIDAATKHVPKSILV*NSLVNLDRHLTTLPSLYLGRKALGTLFASRIPPFRTTPL 216
           Q+  + I    +H  K ++    L   + +LT+LP    G   LG L A R+        
Sbjct: 202 QLDNNQITCLDEHAFKGLVELEILTLNNNNLTSLPHNIFG--GLGRLRALRL-------- 251

Query: 217 APCC**STNPLACSCSASY-------GTRLVPSTTLQMPS 315
                 S NP AC C  S+        TRL P T  Q PS
Sbjct: 252 ------SDNPFACDCHLSWLSRFLRSATRLAPYTRCQSPS 285


>sp|Q91678|GAT6A_XENLA GATA-binding factor 6-A OS=Xenopus laevis
           GN=gata6-A PE=2 SV=1
          Length = 391

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 PLACSCSASYGTRLVPSTTLQMPSAGPGGP 333
           PLA S + SYG+   P    Q+ SA P GP
Sbjct: 118 PLARSLNGSYGSHYTPYMAPQLTSAWPAGP 147


>sp|P19938|DAAA_BACYM D-alanine aminotransferase OS=Bacillus sp.
           (strain YM-1) GN=dat PE=1 SV=2
          Length = 283

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 146 RDGKVVKWRSKLTKEFHTRI 87
           RDGKV +W  KL K+F T+I
Sbjct: 258 RDGKVGEWTRKLQKQFETKI 277


>sp|P70005|GAT6B_XENLA GATA-binding factor 6-B OS=Xenopus laevis
           GN=gata6-B PE=2 SV=1
          Length = 391

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 244 PLACSCSASYGTRLVPSTTLQMPSAGPGGP 333
           PLA   + SYG+   P  T Q+ SA P GP
Sbjct: 118 PLARPLNGSYGSPYTPYMTPQLTSAWPAGP 147


>sp|P09095|TYCA_BREPA Tyrocidine synthetase 1 OS=Brevibacillus
           parabrevis GN=tycA PE=1 SV=2
          Length = 1088

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
 Frame = -2

Query: 362 HRLKIHEMVVGPPGPALGIWSVVEGTNLVPYEAE-QLQANGFVLH*QHGARGVVLNGGIR 186
           ++L +  + +G P     I+ V E   L+P  +E +L   G  L     ARG      + 
Sbjct: 328 NQLSVQSVPIGKPIQNTHIYIVNEDLQLLPTGSEGELCIGGVGL-----ARGYWNRPDLT 382

Query: 185 DANRVPSAFRP---RYRDGKVVKWRSKLTKEFHTRID 84
               V + F P    YR G + KW +  T EF  RID
Sbjct: 383 AEKFVDNPFVPGEKMYRTGDLAKWLTDGTIEFLGRID 419
tr_hit_id Q8NJN4
Definition tr|Q8NJN4|Q8NJN4_9HYPO B-1,6-glucanase OS=Neotyphodium sp. FCB-2002
Align length 89
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917272|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F03.
         (408 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8NJN4|Q8NJN4_9HYPO B-1,6-glucanase OS=Neotyphodium sp. FCB-2...    34   3.2  
tr|Q1D592|Q1D592_MYXXD Non-ribosomal peptide synthase/polyketide...    34   4.2  
tr|A4PBK4|A4PBK4_9METZ Pax-B OS=Coeloplana willeyi PE=2 SV=1           33   9.3  
tr|Q5T986|Q5T986_HUMAN Inter-alpha (Globulin) inhibitor H2 OS=Ho...    33   9.3  
tr|Q5T985|Q5T985_HUMAN Inter-alpha (Globulin) inhibitor H2 OS=Ho...    33   9.3  
tr|B4DM79|B4DM79_HUMAN cDNA FLJ53848, highly similar to Inter-al...    33   9.3  
tr|A2RTY6|A2RTY6_HUMAN Inter-alpha (Globulin) inhibitor H2 OS=Ho...    33   9.3  
tr|Q24ZL6|Q24ZL6_DESHY Fumarate reductase iron-sulfur protein OS...    33   9.4  
tr|Q9APF9|Q9APF9_9FIRM Putative fumarate reductase iron-sulfur p...    33   9.4  
tr|B8FW23|B8FW23_DESHD Succinate dehydrogenase and fumarate redu...    33   9.4  

>tr|Q8NJN4|Q8NJN4_9HYPO B-1,6-glucanase OS=Neotyphodium sp. FCB-2002
           PE=2 SV=1
          Length = 429

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 15/89 (16%)
 Frame = -2

Query: 314 LGIWSVVE-----------GTNLVPYEAEQLQANG----FVLH*QHGARGVVLNGGIRDA 180
           +G WS V+           G  ++PY    +Q       +V+   HGA G          
Sbjct: 132 MGYWSYVDIVDKATEPFADGNKMLPYLDAVVQKAADLGMYVIIDLHGAPGGQQEDVFTGQ 191

Query: 179 NRVPSAFRPRYRDGKVVKWRSKLTKEFHT 93
           N  P+ F   Y  G+  KW S +TK  HT
Sbjct: 192 NNKPAGFFNDYNFGRAQKWLSWMTKRIHT 220


>tr|Q1D592|Q1D592_MYXXD Non-ribosomal peptide synthase/polyketide
            synthase OS=Myxococcus xanthus (strain DK 1622)
            GN=MXAN_4001 PE=4 SV=1
          Length = 3780

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 9/117 (7%)
 Frame = -2

Query: 407  GIVEGYIWFCNASNLHRLKIHE---MVVGPPGPALGIWSVVEGTNLVPYEAE-QLQANGF 240
            G  E  IW    S +HR+++ E   + +G   P   ++ +     LVP  A  +L   G 
Sbjct: 3009 GPTEATIW----STVHRVRVDEEGRVPIGRVVPGARVYLLDAHRRLVPRGAPGELYVGGA 3064

Query: 239  VLH*QHGARGVVLNGGIRDANRVPSAFRPR-----YRDGKVVKWRSKLTKEFHTRID 84
             +     ARG +   G+     V   F  R     YR G V +WR+  T EF  R+D
Sbjct: 3065 GV-----ARGYLGQPGLTSERFVMDPFDGRLGARMYRTGDVARWRADGTLEFIGRVD 3116


>tr|A4PBK4|A4PBK4_9METZ Pax-B OS=Coeloplana willeyi PE=2 SV=1
          Length = 457

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
 Frame = +1

Query: 100 NSLVNLDRHLTTLPSLYLGRKALGTLFASRIPPFRTTPLAPCC**STNPLACSCSASYGT 279
           +++ +L   LT LP L     +L T F   + P    PL      +T P +   S S  +
Sbjct: 359 STIADLLPALTPLPQL----SSLNTTFVPVLTPISNLPL------TTPPTSVPTSFSPLS 408

Query: 280 RLVPSTTLQMPSAGPGGPT------TIS*IFNLCKLLALQNQI*PSTI 405
            + P TTL +PS   G PT      T S I NL +L A ++ +  ST+
Sbjct: 409 PVSPPTTLPLPSVLQGSPTPPDCERTASSI-NLLRLKAKEHNMHLSTV 455


>tr|Q5T986|Q5T986_HUMAN Inter-alpha (Globulin) inhibitor H2 OS=Homo
           sapiens GN=ITIH2 PE=2 SV=1
          Length = 946

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = +1

Query: 61  AATKHVPKSILV*NSLVNLDRHLTT-LPSLYLGRKALGTLFASRIPPFRTTPLAPCC**S 237
           AA + + +SIL     ++LD H+ T L SL +  +A      +  PP             
Sbjct: 603 AAKRRITRSILQ----MSLDHHIVTPLTSLVIENEAGDERMLADAPP------------- 645

Query: 238 TNPLACSCSASYGTRLVPSTTLQMPSAGPGGPTTIS*IFNLCKLLALQNQI*PSTIP 408
            +P  CS +  YG+++VP +T   PS     PT +        +LA  +Q+  ST P
Sbjct: 646 QDPSCCSGALYYGSKVVPDST---PSWANPSPTPV------ISMLAQGSQVLESTPP 693


>tr|Q5T985|Q5T985_HUMAN Inter-alpha (Globulin) inhibitor H2 OS=Homo
           sapiens GN=ITIH2 PE=2 SV=1
          Length = 935

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = +1

Query: 61  AATKHVPKSILV*NSLVNLDRHLTT-LPSLYLGRKALGTLFASRIPPFRTTPLAPCC**S 237
           AA + + +SIL     ++LD H+ T L SL +  +A      +  PP             
Sbjct: 592 AAKRRITRSILQ----MSLDHHIVTPLTSLVIENEAGDERMLADAPP------------- 634

Query: 238 TNPLACSCSASYGTRLVPSTTLQMPSAGPGGPTTIS*IFNLCKLLALQNQI*PSTIP 408
            +P  CS +  YG+++VP +T   PS     PT +        +LA  +Q+  ST P
Sbjct: 635 QDPSCCSGALYYGSKVVPDST---PSWANPSPTPV------ISMLAQGSQVLESTPP 682


>tr|B4DM79|B4DM79_HUMAN cDNA FLJ53848, highly similar to
           Inter-alpha-trypsin inhibitor heavy chain H2 OS=Homo
           sapiens PE=2 SV=1
          Length = 543

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = +1

Query: 61  AATKHVPKSILV*NSLVNLDRHLTT-LPSLYLGRKALGTLFASRIPPFRTTPLAPCC**S 237
           AA + + +SIL     ++LD H+ T L SL +  +A      +  PP             
Sbjct: 365 AAKRRITRSILQ----MSLDHHIVTPLTSLVIENEAGDERMLADAPP------------- 407

Query: 238 TNPLACSCSASYGTRLVPSTTLQMPSAGPGGPTTIS*IFNLCKLLALQNQI*PSTIP 408
            +P  CS +  YG+++VP +T   PS     PT +        +LA  +Q+  ST P
Sbjct: 408 QDPSCCSGALYYGSKVVPDST---PSWANPSPTPV------ISMLAQGSQVLESTPP 455


>tr|A2RTY6|A2RTY6_HUMAN Inter-alpha (Globulin) inhibitor H2 OS=Homo
           sapiens GN=ITIH2 PE=2 SV=1
          Length = 946

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
 Frame = +1

Query: 61  AATKHVPKSILV*NSLVNLDRHLTT-LPSLYLGRKALGTLFASRIPPFRTTPLAPCC**S 237
           AA + + +SIL     ++LD H+ T L SL +  +A      +  PP             
Sbjct: 603 AAKRRITRSILQ----MSLDHHIVTPLTSLVIENEAGDERMLADAPP------------- 645

Query: 238 TNPLACSCSASYGTRLVPSTTLQMPSAGPGGPTTIS*IFNLCKLLALQNQI*PSTIP 408
            +P  CS +  YG+++VP +T   PS     PT +        +LA  +Q+  ST P
Sbjct: 646 QDPSCCSGALYYGSKVVPDST---PSWANPSPTPV------ISMLAQGSQVLESTPP 693


>tr|Q24ZL6|Q24ZL6_DESHY Fumarate reductase iron-sulfur protein
           OS=Desulfitobacterium hafniense (strain Y51) GN=frdB
           PE=4 SV=1
          Length = 250

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 60  CCHQACPQINSRMKFLG 110
           CC ++CPQ+NSR +F+G
Sbjct: 160 CCMESCPQVNSRSRFIG 176


>tr|Q9APF9|Q9APF9_9FIRM Putative fumarate reductase iron-sulfur
           protein subunit FrdB OS=Desulfitobacterium dehalogenans
           GN=frdB PE=4 SV=1
          Length = 250

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 60  CCHQACPQINSRMKFLG 110
           CC ++CPQ+NSR +F+G
Sbjct: 160 CCMESCPQVNSRSRFIG 176


>tr|B8FW23|B8FW23_DESHD Succinate dehydrogenase and fumarate
           reductase iron-sulfur protein OS=Desulfitobacterium
           hafniense (strain DCB-2) GN=Dhaf_0745 PE=4 SV=1
          Length = 250

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 60  CCHQACPQINSRMKFLG 110
           CC ++CPQ+NSR +F+G
Sbjct: 160 CCMESCPQVNSRSRFIG 176