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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917279
Clone id YMU001_000098_F10
Library
Length 282
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACGAGCTATCGACCTCCTTAAAAACATCCAGAGTAGGCTTTGAGCCTCTCTTTGAAATTA
ACTATATCTTCACCCCATAGGTAGCATCCTCCATTGTAGAGATGGGATGAGTGATTACCA
TATCCTCCACTAACATCCGCATACACCCCTTTTGAAAAGTTAGTGTCCTGACGGCATACC
TGTCCTTAAAACACAAGATCTCTTTCCAAAGCATCACTGAAGCTATCACAATCCCTTCTG
CCATGGTCTACTAGTCATATGCATCTGTGCACAAATCCTTCT
■■Homology search results ■■ -
sp_hit_id Q17XC0
Definition sp|Q17XC0|MRAW_HELAH S-adenosyl-L-methionine-dependent methyltransferase mraW OS=Helicobacter acinonychis (strain Sheeba)
Align length 53
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917279|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F10.
         (282 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q17XC0|MRAW_HELAH S-adenosyl-L-methionine-dependent methyltra...    30   4.9  
sp|Q6FJC7|LGE1_CANGA Transcriptional regulatory protein LGE1 OS=...    30   4.9  
sp|Q9FPD5|ADSL3_ARATH Delta-9 desaturase-like 3 protein OS=Arabi...    30   4.9  

>sp|Q17XC0|MRAW_HELAH S-adenosyl-L-methionine-dependent
           methyltransferase mraW OS=Helicobacter acinonychis
           (strain Sheeba) GN=mraW PE=3 SV=1
          Length = 308

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
 Frame = -2

Query: 152 KGVYADVSGGYGNHSSHLYNGGCYL---------WGEDIVNFKERLKAYSGCF 21
           KGV+ D + G G HS  L +   +L           ++I   KERLKA+ GC+
Sbjct: 25  KGVFIDCTLGLGGHSKALLSQKPHLKLIGIDKDKHAQEIA--KERLKAFEGCY 75


>sp|Q6FJC7|LGE1_CANGA Transcriptional regulatory protein LGE1
           OS=Candida glabrata GN=LGE1 PE=3 SV=1
          Length = 313

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
 Frame = -2

Query: 158 FSKGVYADVSGGY------GNHSSHLYNGGCYLWGEDIVN--FKERLKAYSG 27
           +S+G  +   GGY      G H+SH YN G Y    +  N  + ER K+ SG
Sbjct: 113 YSRGGNSSGRGGYSSYNRGGYHASHQYNNGGYYHRNNNYNSSYTERQKSVSG 164


>sp|Q9FPD5|ADSL3_ARATH Delta-9 desaturase-like 3 protein
           OS=Arabidopsis thaliana GN=At1g06120 PE=2 SV=1
          Length = 299

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 134 VSGGYGNHSSHLYNGGCYLWGEDIVNFKE 48
           V G  G H++ L N  C++WG    N K+
Sbjct: 200 VGGAIGYHATWLINSACHIWGSRAWNTKD 228
tr_hit_id A9TU51
Definition tr|A9TU51|A9TU51_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 45.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917279|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F10.
         (282 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TU51|A9TU51_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.001
tr|A9SPY3|A9SPY3_PHYPA Predicted protein OS=Physcomitrella paten...    35   0.003
tr|A9T791|A9T791_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|A9SBI1|A9SBI1_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.005
tr|A9TPD7|A9TPD7_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|A9T0L5|A9T0L5_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|A9ST08|A9ST08_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9S3T9|A9S3T9_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.012
tr|A9TVQ7|A9TVQ7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A9TPD5|A9TPD5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A9TQH5|A9TQH5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9SV40|A9SV40_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9RS55|A9RS55_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9TEU0|A9TEU0_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A9SMG8|A9SMG8_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A9SKD6|A9SKD6_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.026
tr|A9SU09|A9SU09_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|A9S6S0|A9S6S0_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|A9RSV0|A9RSV0_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.034
tr|A9TPD8|A9TPD8_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.045
tr|A9RV48|A9RV48_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.045
tr|A9RB92|A9RB92_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.045
tr|A9TUI7|A9TUI7_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.059
tr|A9TQN7|A9TQN7_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.059
tr|A9TQD2|A9TQD2_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.059
tr|A9TGX6|A9TGX6_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.059
tr|A9S529|A9S529_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.059
tr|A9TL28|A9TL28_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.077
tr|A9TGA6|A9TGA6_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.077
tr|A9T7S3|A9T7S3_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.077

>tr|A9TU51|A9TU51_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97309 PE=4 SV=1
          Length = 341

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
 Frame = -3

Query: 214 MLWKEILCFKD-------RYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           M+W+EI+C+KD       R  +    F KG MR LV+D +  H  S  E A+YGV+I
Sbjct: 247 MIWQEIICWKDGKIVLKDREDLLQTNFGKGGMRALVQDYLKEHETSARESASYGVRI 303


>tr|A9SPY3|A9SPY3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82346 PE=4 SV=1
          Length = 459

 Score = 34.7 bits (78), Expect(2) = 0.003
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 281 EGFVHRCI*LVD--HGRRDCDSFSDALERDLVF*GQVCRQDTNFSKG 147
           +G+V RCI   D  H R+DC+ F++ + +DL+         TNF KG
Sbjct: 50  QGYVQRCIWCDDASHTRKDCNEFNNMIRKDLL--------QTNFGKG 88



 Score = 29.3 bits (64), Expect(2) = 0.003
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 157 FQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           F KG M+ LV+D +  H  +  E A+YG ++
Sbjct: 85  FGKGGMKALVQDYLKEHETAARESASYGARV 115


>tr|A9T791|A9T791_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_89013 PE=4 SV=1
          Length = 369

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -3

Query: 232 IVIASVMLWKE-ILCFKDRYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           IV   V+ WK+  +  KD   +    F K CMR L++D +I H I+  E A+YG ++
Sbjct: 75  IVQQEVIYWKDGKIALKDTEDLLQTNFDKACMRALIQDYLIEHEIAKQESASYGARV 131


>tr|A9SBI1|A9SBI1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_77120 PE=4 SV=1
          Length = 383

 Score = 43.5 bits (101), Expect = 0.005
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
 Frame = -3

Query: 214 MLWKEILCFKD-------RYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           M+W+ I+C+KD       R  +  + F KG MR LV+D +  H  +T E A+YG ++
Sbjct: 248 MIWQGIICWKDGKIALKDREDLLQINFDKGGMRALVQDYLKEHETATRESASYGARV 304


>tr|A9TPD7|A9TPD7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95399 PE=4 SV=1
          Length = 591

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
 Frame = -3

Query: 214 MLWKEILCFKD-------RYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI*LI 56
           M+W+ I+C+KD       R  +    F KG MR L++D +  H  +  E A+YG K+  +
Sbjct: 248 MIWQGIICWKDGKIALKDRKDLLQTNFGKGGMRALIQDYLKEHETAARESASYGAKV-DV 306

Query: 55  SKRGSKPTLDVF 20
             RGS  T+  +
Sbjct: 307 DLRGSMETIHAY 318


>tr|A9T0L5|A9T0L5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_86517 PE=4 SV=1
          Length = 339

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -3

Query: 217 VMLWKE-ILCFKDRYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           V+ WK+  +  KD   +  + F KG MR LV+D +I H I+T E A+YG ++
Sbjct: 71  VIYWKDGKIALKDTKDLLQINFGKGSMRALVQDYLIEHGIATRESASYGARV 122


>tr|A9ST08|A9ST08_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_83606 PE=4 SV=1
          Length = 1268

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -3

Query: 217  VMLWKE-ILCFKDRYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
            V+ WK+  +  KD   +    F KG MR L++D +I H I+T+E A+YG +I
Sbjct: 1153 VIFWKDGKITLKDAKDLLQTNFGKGGMRALIQDYLIEHRIATLESASYGARI 1204



 Score = 38.5 bits (88), Expect = 0.17
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
 Frame = -3

Query: 214 MLWKEILCFKD-------RYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           M+W+ I+C+KD       R  +    F KG MR LV+D +  H     E A+YG ++
Sbjct: 318 MIWQGIICWKDGKIALKDREDLLQTNFGKGGMRALVQDYLKEHETVVRESASYGARV 374


>tr|A9S3T9|A9S3T9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74204 PE=4 SV=1
          Length = 321

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 7/57 (12%)
 Frame = -3

Query: 214 MLWKEILCFKD-RYAVR------TLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           M+W+E++C+KD + A++       + F KG MR L++D +  H I+  E  +YG ++
Sbjct: 60  MIWQEVICWKDGKIALKDMKVLLQINFGKGGMRALIQDYLKAHEIAARESTSYGARV 116


>tr|A9TVQ7|A9TVQ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97910 PE=4 SV=1
          Length = 506

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = -3

Query: 232 IVIASVMLWK-EILCFKDRYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI 65
           +V  +++ WK E +  KD   +    F KGCM+ LV+D ++ H I+ +E A+YG ++
Sbjct: 1   MVQQNIVYWKDEKVTLKDIGDLLQTNFDKGCMKALVKDYLVAHGIAAIEAASYGTRM 57


>tr|A9TPD5|A9TPD5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_95397 PE=4 SV=1
          Length = 840

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
 Frame = -3

Query: 214 MLWKEILCFKD-------RYAVRTLTFQKGCMRMLVEDMVITHPISTMEDATYGVKI*LI 56
           M+W+ I+C+KD       R  +    F KG MR L++D +  H  +  E A+YG K+  +
Sbjct: 248 MIWQGIICWKDGKIALKDRKDLLQTNFGKGGMRALIQDYLKEHETTARESASYGAKV-DV 306

Query: 55  SKRGSKPTLDVFKEVDSS 2
             RGS  T + +    S+
Sbjct: 307 DLRGSMETSEFWASAIST 324