BP917281
Clone id YMU001_000098_F12
Library
Length 463
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GATGCACTATCATGTATCACATTGCTTCCTGGTAGATGATGTCATGCTCACAATTTTTAC
AGCACATATCTTACACTCTCTCAACAAGCTACATAGGCATACAATTTGGCAATTTTTAGA
AGCTACGAAGTGTTCATGAAGGAAACATGGATTTTAAATCAGATACATAGCCAAGGTTGG
TCTCCAAATGTTTCTTTGTCTTTTTCGGTTTTCTTTGGCTTGCGATGAAACTTTGTTTCA
GATGTCTCATGTTTCACTTTTGGGCTACCTATAAGTGGAAACAAGCTTATACAATGTATG
TCCGTTTAATATTTGCATTCAAGTGAGCTCCAAGGGAAGACTTGAAAGAAATTGTAGGAG
TTCCTTAATAAGAAGCAAACCTGTCATTGTGCCTAGGAAGACGGCAAAGGATCAAGCAAT
GGGAAGATGAAGATCATGAGGTATTCTAGCCTTTTGACATTTC
■■Homology search results ■■ -
sp_hit_id Q9NQC3
Definition sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens
Align length 69
Score (bit) 32.7
E-value 0.77
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917281|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F12.
(463 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2 33 0.77
sp|Q91WN3|S7A13_MOUSE Solute carrier family 7 member 13 OS=Mus m... 30 6.5
sp|Q6ZUT1|CK057_HUMAN Uncharacterized protein C11orf57 OS=Homo s... 30 6.5

>sp|Q9NQC3|RTN4_HUMAN Reticulon-4 OS=Homo sapiens GN=RTN4 PE=1 SV=2
Length = 1192

Score = 32.7 bits (73), Expect = 0.77
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3

Query: 305 TDIHCISLFPLIGSPKVKHETSETKFHRKPKK--TEKDKETFGDQPWLCI*FKIHVSFMN 132
T+ ++FPL+G P +++T E K K + TEK+ T P+L ++
Sbjct: 472 TESIATNIFPLLGDPTSENKTDEKKIEEKKAQIVTEKNTSTKTSNPFLVAAQDSETDYVT 531

Query: 131 TS*LLKIAK 105
T L K+ +
Sbjct: 532 TDNLTKVTE 540


>sp|Q91WN3|S7A13_MOUSE Solute carrier family 7 member 13 OS=Mus
musculus GN=Slc7a13 PE=2 SV=1
Length = 478

Score = 29.6 bits (65), Expect = 6.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3

Query: 171 PRLVSKCFFVFFGFLWLAMKLCFRCLMFHFWATYKWKQAYTMYVRLIF 314
P + S + FL+L L F + HF + W Q T Y++L+F
Sbjct: 415 PLVKSPKLHYIYVFLFLLSGLVFYVPLIHFKVKFVWFQKLTCYLQLLF 462


>sp|Q6ZUT1|CK057_HUMAN Uncharacterized protein C11orf57 OS=Homo
sapiens GN=C11orf57 PE=1 SV=2
Length = 292

Score = 29.6 bits (65), Expect = 6.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3

Query: 266 SPKVKHETSETKFHRKPKKTEKDKE 192
SP+VK T E++ H+K KK+ K K+
Sbjct: 137 SPQVKSSTHESRKHKKSKKSHKKKQ 161


tr_hit_id A3QRI2
Definition tr|A3QRI2|A3QRI2_9PLAT NADH-ubiquinone oxidoreductase chain 1 OS=Microcotyle sebastis
Align length 41
Score (bit) 33.5
E-value 5.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917281|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_F12.
(463 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A3QRI2|A3QRI2_9PLAT NADH-ubiquinone oxidoreductase chain 1 OS... 33 5.4
tr|B0SJZ1|B0SJZ1_LEPBP Cation transporter OS=Leptospira biflexa ... 33 9.2
tr|B0S9Q8|B0S9Q8_LEPBA Potassium transport system, membrane comp... 33 9.2
tr|Q8IUA4|Q8IUA4_HUMAN RTN4 isoform Aa OS=Homo sapiens GN=RTN4 P... 33 9.2
tr|Q53RF4|Q53RF4_HUMAN Putative uncharacterized protein RTN4 (Fr... 33 9.2

>tr|A3QRI2|A3QRI2_9PLAT NADH-ubiquinone oxidoreductase chain 1
OS=Microcotyle sebastis GN=ND1 PE=3 SV=1
Length = 305

Score = 33.5 bits (75), Expect = 5.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3

Query: 192 FFVFFGFLWLAMKLCFRCLMFHFWATYKWKQAYTMYVRLIF 314
FF F F+ + ++ CF + ++ + WK + +Y L+F
Sbjct: 262 FFFFHSFILIFVRACFPRFRYDYYVNFVWKNLFIVYFLLLF 302


>tr|B0SJZ1|B0SJZ1_LEPBP Cation transporter OS=Leptospira biflexa
serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)
GN=LEPBI_I0152 PE=4 SV=1
Length = 605

Score = 32.7 bits (73), Expect = 9.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3

Query: 174 RLVSKCFFVFFGFLWLAMKLCFRCLMFHFWATYKWKQAYTMYVRLIFAF 320
R + + F++FFGFL +A+ + L F F+ +WK T+ +R + +F
Sbjct: 33 RPMGRMFYIFFGFLSVAILI----LDFGFYYPVEWKPYVTISIRTLVSF 77


>tr|B0S9Q8|B0S9Q8_LEPBA Potassium transport system, membrane
component OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=trkG-1 PE=4 SV=1
Length = 605

Score = 32.7 bits (73), Expect = 9.2
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3

Query: 174 RLVSKCFFVFFGFLWLAMKLCFRCLMFHFWATYKWKQAYTMYVRLIFAF 320
R + + F++FFGFL +A+ + L F F+ +WK T+ +R + +F
Sbjct: 33 RPMGRMFYIFFGFLSVAILI----LDFGFYYPVEWKPYVTISIRTLVSF 77


>tr|Q8IUA4|Q8IUA4_HUMAN RTN4 isoform Aa OS=Homo sapiens GN=RTN4 PE=2
SV=1
Length = 986

Score = 32.7 bits (73), Expect = 9.2
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3

Query: 305 TDIHCISLFPLIGSPKVKHETSETKFHRKPKK--TEKDKETFGDQPWLCI*FKIHVSFMN 132
T+ ++FPL+G P +++T E K K + TEK+ T P+L ++
Sbjct: 266 TESIATNIFPLLGDPTSENKTDEKKIEEKKAQIVTEKNTSTKTSNPFLVAAQDSETDYVT 325

Query: 131 TS*LLKIAK 105
T L K+ +
Sbjct: 326 TDNLTKVTE 334


>tr|Q53RF4|Q53RF4_HUMAN Putative uncharacterized protein RTN4
(Fragment) OS=Homo sapiens GN=RTN4 PE=4 SV=1
Length = 818

Score = 32.7 bits (73), Expect = 9.2
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3

Query: 305 TDIHCISLFPLIGSPKVKHETSETKFHRKPKK--TEKDKETFGDQPWLCI*FKIHVSFMN 132
T+ ++FPL+G P +++T E K K + TEK+ T P+L ++
Sbjct: 286 TESIATNIFPLLGDPTSENKTDEKKIEEKKAQIVTEKNTSTKTSNPFLVAAQDSETDYVT 345

Query: 131 TS*LLKIAK 105
T L K+ +
Sbjct: 346 TDNLTKVTE 354