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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917282
Clone id YMU001_000098_G01
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTTTAAGACGAAAGCCATATTCCTGTGTTAGTGTGCACCTGCATTGTGAGTCCTAGCT
TATCCATTGACCACCTTCCTTACATTAGCTCTTGATATGTTTGCACTTAAATAGGCCTCT
TGCAAAAACAGAATAAGGAACCTTGCTTAAGAGGCATACCCCATGCCAAGTGGATCACGG
TTCTTTATCTGCAACATGAGGTTCTCCTCTGTGCACATCCATGATGCTAGGTTTGAATTA
TCCTTTTTACAAAAGTTTAAACAGCATAATCAGAACACCCTCTTCATATGAAAACCACTA
ATCAAGATGAAACTTTATGAGCGTCTTCAAGTTAACATCTGTTGGAAATTGAATTGATTG
GCTTGCATTGTCACTGACTAATGCCTGGA
■■Homology search results ■■ -
sp_hit_id Q9NJN5
Definition sp|Q9NJN5|RPOB_NEOCA DNA-directed RNA polymerase subunit beta OS=Neospora caninum
Align length 41
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917282|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_G01.
         (389 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NJN5|RPOB_NEOCA DNA-directed RNA polymerase subunit beta OS...    29   6.4  
sp|Q8EQK9|Y1688_OCEIH UPF0343 protein OB1688 OS=Oceanobacillus i...    29   8.4  
sp|Q8ENJ6|UVRA_OCEIH UvrABC system protein A OS=Oceanobacillus i...    29   8.4  

>sp|Q9NJN5|RPOB_NEOCA DNA-directed RNA polymerase subunit beta
           OS=Neospora caninum GN=rpoB PE=3 SV=1
          Length = 1050

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 187 ICNMRFSSVHIHDA--RFELSFLQKFKQHNQNTLFI*KPLI 303
           + N     +HI D   R  + +L K+K+ NQNTL   KPL+
Sbjct: 557 VLNASSLKIHIKDLFNREIVYYLSKYKKSNQNTLIHQKPLV 597


>sp|Q8EQK9|Y1688_OCEIH UPF0343 protein OB1688 OS=Oceanobacillus
           iheyensis GN=OB1688 PE=3 SV=2
          Length = 302

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 124 KNRIRNLA*EAYPMPSGSRFFICNMRFSSVHIHDARFELSF 246
           ++ +R +A + Y MP  S+F +      S+H+HDA   +++
Sbjct: 257 EDMVRLIAADLYEMPFVSKFHVSCRNEESIHMHDAIASITY 297


>sp|Q8ENJ6|UVRA_OCEIH UvrABC system protein A OS=Oceanobacillus
           iheyensis GN=uvrA PE=3 SV=1
          Length = 958

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 142 LA*EAYPMPSGSRFFICNMRFSSVHIHDARFELSFLQKFKQHNQNTLFI 288
           LA E +   +G  F+I +   + +H+ D R  LS LQ+   +  + L I
Sbjct: 838 LASELHKRSTGKSFYILDEPTTGLHVDDIRRLLSVLQRIADNGDSVLII 886
tr_hit_id A9SI93
Definition tr|A9SI93|A9SI93_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 30
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917282|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_G01.
         (389 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SI93|A9SI93_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.012
tr|Q9M1V7|Q9M1V7_ARATH Putative uncharacterized protein F16M2_18...    37   0.49 
tr|Q8RXY0|Q8RXY0_ARATH Putative uncharacterized protein At3g6333...    37   0.49 
tr|Q2V3M0|Q2V3M0_ARATH Uncharacterized protein At3g63330.2 OS=Ar...    37   0.49 
tr|B8BL95|B8BL95_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|Q2R1Z6|Q2R1Z6_ORYSJ Serine/threonine-protein kinase Doa, puta...    35   1.4  
tr|Q0IRY5|Q0IRY5_ORYSJ Os11g0586100 protein (Fragment) OS=Oryza ...    35   1.4  
tr|A7PUH0|A7PUH0_VITVI Chromosome chr7 scaffold_31, whole genome...    34   3.2  
tr|Q01C45|Q01C45_OSTTA Dehydrogenases with different specificiti...    33   7.1  

>tr|A9SI93|A9SI93_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_130267 PE=4 SV=1
          Length = 362

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -1

Query: 248 KKDNSNLASWMCTEENLMLQIKNRDPLGMG 159
           + +   LA+W CTEE++M QIK RDPLG+G
Sbjct: 294 QSEEVRLAAWKCTEESVMQQIKQRDPLGIG 323


>tr|Q9M1V7|Q9M1V7_ARATH Putative uncharacterized protein F16M2_180
           OS=Arabidopsis thaliana GN=F16M2_180 PE=4 SV=1
          Length = 138

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 248 KKDNSNLASWMCTEENLMLQIKNRDPLGMGY 156
           K+   +LASW C+EE    QIK+RDPL +G+
Sbjct: 70  KQGGISLASWKCSEEFFAEQIKSRDPLKIGF 100


>tr|Q8RXY0|Q8RXY0_ARATH Putative uncharacterized protein At3g63330
           OS=Arabidopsis thaliana GN=At3g63330 PE=2 SV=1
          Length = 376

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 248 KKDNSNLASWMCTEENLMLQIKNRDPLGMGY 156
           K+   +LASW C+EE    QIK+RDPL +G+
Sbjct: 308 KQGGISLASWKCSEEFFAEQIKSRDPLKIGF 338


>tr|Q2V3M0|Q2V3M0_ARATH Uncharacterized protein At3g63330.2
           OS=Arabidopsis thaliana GN=At3g63330 PE=4 SV=1
          Length = 348

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = -1

Query: 248 KKDNSNLASWMCTEENLMLQIKNRDPLGMGY 156
           K+   +LASW C+EE    QIK+RDPL +G+
Sbjct: 308 KQGGISLASWKCSEEFFAEQIKSRDPLKIGF 338


>tr|B8BL95|B8BL95_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_36621 PE=4 SV=1
          Length = 1133

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
 Frame = -1

Query: 227  ASWMCTEENLMLQIKNRDPLGMGYAS-----*ARFLILFLQEAYLSANISRAN 84
            ASW C+EE+   Q+K RDPL MG+ +      AR L+++  E  LS + + A+
Sbjct: 1074 ASWKCSEESFAHQVKIRDPLKMGFPNIWALRLARQLLIWHPEDRLSVDEALAH 1126



 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = -1

Query: 227 ASWMCTEENLMLQIKNRDPLGMGYAS-----*ARFLILFLQEAYLSAN 99
           ASW C+EE+   Q+K RDPL MG+ +      AR L+++  E  LS +
Sbjct: 354 ASWKCSEESFAHQVKIRDPLKMGFPNIWALRLARQLLIWHPEDRLSVD 401


>tr|Q2R1Z6|Q2R1Z6_ORYSJ Serine/threonine-protein kinase Doa,
           putative, expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g37540 PE=4 SV=2
          Length = 248

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = -1

Query: 227 ASWMCTEENLMLQIKNRDPLGMGYAS-----*ARFLILFLQEAYLSAN 99
           ASW C+EE+   Q+K RDPL MG+ +      AR L+++  E  LS +
Sbjct: 189 ASWKCSEESFAHQVKIRDPLKMGFPNIWALRLARQLLIWHPEDRLSVD 236


>tr|Q0IRY5|Q0IRY5_ORYSJ Os11g0586100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os11g0586100 PE=4 SV=1
          Length = 306

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
 Frame = -1

Query: 227 ASWMCTEENLMLQIKNRDPLGMGYAS-----*ARFLILFLQEAYLSAN 99
           ASW C+EE+   Q+K RDPL MG+ +      AR L+++  E  LS +
Sbjct: 247 ASWKCSEESFAHQVKIRDPLKMGFPNIWALRLARQLLIWHPEDRLSVD 294


>tr|A7PUH0|A7PUH0_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023798001
           PE=4 SV=1
          Length = 415

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 227 ASWMCTEENLMLQIKNRDPLGMGY 156
           ASW C+EE    QIK+RDPL +G+
Sbjct: 354 ASWKCSEEFFSHQIKSRDPLKLGF 377


>tr|Q01C45|Q01C45_OSTTA Dehydrogenases with different specificities
            (Related to short-chain alcohol dehydrogenases) (ISS)
            OS=Ostreococcus tauri GN=Ot03g04580 PE=4 SV=1
          Length = 1419

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 230  LASWMCTEENLMLQIKNRDPLGMGYAS 150
            L SW CTE  LM   K RDPLG+G  S
Sbjct: 1331 LLSWECTEVALMNIFKARDPLGVGLES 1357