BP917284 |
Clone id |
YMU001_000098_G03 |
Library |
YMU01 |
Length |
424 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000098_G03. |
Accession |
BP917284 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CATTTCGGGGGTGCCCATATTTTCTATCTACATCATCTGTTATGTAGTCTGGGTGGTAAG TCACATGATACCATGCTGAGGCCCTTTTCAGCTGCTCATAAGAAACCTCATCATCGTCAT CATTGTCATCATCATATTCATTTCTCAGCCAGCTTCTAGCTTCCTTTCTGAGGGAGCTCA TTGCTCTCATAATTCTCTCCTTGACCTCTCCGGGCCTTTTGCGGAACCATTTGGATATTC TCAGAATGTGCCCAGTGAACATTTCTGCCTCAGACTTGACATCATATTGATACATCAAGT CCAAAAGCTTCTCATCATAGCAGTTTTTTAGAGCTTTGGCCTCTTCCAAGTAAACTCCAA ACCCTGCAAACTCCAGCTCTTCATCATAGCTTCTCACAGCCTCTTCCCTTGTGAAAGAGG ATAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O14227 |
Definition |
sp|O14227|RDR1_SCHPO RNA-dependent RNA polymerase 1 OS=Schizosaccharomyces pombe |
Align length |
37 |
Score (bit) |
32.7 |
E-value |
0.61 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q75ZN6 |
Definition |
tr|Q75ZN6|Q75ZN6_VIGUN RNA-directed RNA Polymerase (Fragment) OS=Vigna unguiculata |
Align length |
127 |
Score (bit) |
102.0 |
E-value |
1.0e-20 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917284|Adiantum capillus-veneris mRNA, clone: YMU001_000098_G03. (424 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q75ZN6|Q75ZN6_VIGUN RNA-directed RNA Polymerase (Fragment) OS... 102 1e-20 tr|Q6L447|Q6L447_SOLDE RNA-directed RNA polymerase-like, putativ... 101 2e-20 tr|Q9ZR58|Q9ZR58_SOLLC RNA-directed RNA polymerase OS=Solanum ly... 100 5e-20 tr|Q6L3V2|Q6L3V2_SOLDE RNA dependent RNA polymerase family prote... 100 6e-20 tr|Q6L3P6|Q6L3P6_SOLDE RNA-directed RNA polymerase, putative OS=... 100 6e-20 tr|A4UV17|A4UV17_SOLTU Putative RNA-dependent RNA-polymerase OS=... 100 6e-20 tr|Q6L3W8|Q6L3W8_SOLDE RNA-directed RNA polymerase, putative OS=... 99 8e-20 tr|A7P3W5|A7P3W5_VITVI Chromosome chr1 scaffold_5, whole genome ... 99 8e-20 tr|A5AM83|A5AM83_VITVI Putative uncharacterized protein OS=Vitis... 99 8e-20 tr|Q0KIK9|Q0KIK9_SOLTU RNA-directed RNA polymerase, putative OS=... 99 1e-19 tr|Q6RFH9|Q6RFH9_HORVD RNA-directed RNA polymerase 2 OS=Hordeum ... 99 1e-19 tr|Q6L3P3|Q6L3P3_SOLDE RNA-directed RNA polymerase, putative OS=... 99 1e-19 tr|Q0KIR2|Q0KIR2_SOLDE RNA dependent RNA polymerase family prote... 99 1e-19 tr|B5M059|B5M059_HORVU RNA-directed RNA polymerase 1a (Fragment)... 99 1e-19 tr|A4UV46|A4UV46_SOLTU Putative RNA-dependent RNA-polymerase OS=... 99 1e-19 tr|Q9ZRX3|Q9ZRX3_PETHY RNA-directed RNA polymerase (Fragment) OS... 98 2e-19 tr|A3AB51|A3AB51_ORYSJ Putative uncharacterized protein OS=Oryza... 94 4e-18 tr|A2X9D0|A2X9D0_ORYSI Putative uncharacterized protein OS=Oryza... 94 4e-18 tr|B3SND7|B3SND7_GOSHI RNA-dependent RNA polymerase OS=Gossypium... 92 1e-17 tr|A5ATA5|A5ATA5_VITVI Putative uncharacterized protein OS=Vitis... 92 1e-17 tr|Q9ZRY7|Q9ZRY7_TOBAC RNA-directed RNA polymerase OS=Nicotiana ... 92 2e-17 tr|B2B9K0|B2B9K0_GOSHI RNA-dependent RNA polymerase OS=Gossypium... 91 4e-17 tr|Q9SG02|Q9SG02_ARATH Putative RNA-directed RNA polymerase; 739... 89 1e-16 tr|Q9LQV2|Q9LQV2_ARATH F10B6.19 (Putative RNA-directed RNA polym... 89 1e-16 tr|Q9LKP0|Q9LKP0_ARATH RNA-dependent RNA polymerase OS=Arabidops... 89 1e-16 tr|Q8H1K9|Q8H1K9_ARATH RNA-dependent RNA polymerase 1 OS=Arabido... 89 1e-16 tr|A7P3W3|A7P3W3_VITVI Chromosome chr1 scaffold_5, whole genome ... 89 1e-16 tr|Q6RFI0|Q6RFI0_HORVD RNA-directed RNA polymerase 1 OS=Hordeum ... 88 2e-16 tr|B5M060|B5M060_HORVU RNA-directed RNA polymerase 1b OS=Hordeum... 88 2e-16 tr|A9T7J6|A9T7J6_PHYPA RNA-directed RNA polymerase OS=Physcomitr... 86 9e-16
>tr|Q75ZN6|Q75ZN6_VIGUN RNA-directed RNA Polymerase (Fragment) OS=Vigna unguiculata GN=RdRP PE=2 SV=1 Length = 257
Score = 102 bits (253), Expect = 1e-20 Identities = 58/127 (45%), Positives = 79/127 (62%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 ISSFTRE A SYD ++E GF Y+++A K YD KL +LM Y +K+EAE+ +G+I Sbjct: 105 ISSFTREVARTSYDFDMEVDGFLDYVDDAFYHKTNYDYKLGNLMDYYGIKTEAEILSGNI 164
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 +++SK F KR E I +A++SLRK+ARSW ++ +ASAWYH Sbjct: 165 IKLSKCFNKR--RDAEAINKAVTSLRKDARSWFNE---------GNNGDDEYAKASAWYH 213
Query: 64 VTYHPDY 44 VTYHP Y Sbjct: 214 VTYHPSY 220
>tr|Q6L447|Q6L447_SOLDE RNA-directed RNA polymerase-like, putative OS=Solanum demissum GN=SDM1_25t00006 PE=4 SV=2 Length = 1137
Score = 101 bits (251), Expect = 2e-20 Identities = 57/127 (44%), Positives = 78/127 (61%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I+ FTR++A RSYD +LE GF Y++EA K YD KL +LM Y +K+EAE+ +G I Sbjct: 968 IAIFTRDDARRSYDTDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1027
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 ++ SK F +R + E I A+ +LRKEAR+W + + L +ASAWYH Sbjct: 1028 MKTSKTFDRR--KDAEAISIAVRALRKEARTWFKRRNDID---------DMLPKASAWYH 1076
Query: 64 VTYHPDY 44 VTYHP Y Sbjct: 1077 VTYHPTY 1083
>tr|Q9ZR58|Q9ZR58_SOLLC RNA-directed RNA polymerase OS=Solanum lycopersicum GN=RdRP PE=2 SV=1 Length = 1114
Score = 100 bits (248), Expect = 5e-20 Identities = 56/127 (44%), Positives = 78/127 (61%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I++FTR+ A RSYD ++E GF Y++EA K YD KL +LM Y +K+EAE+ +G I Sbjct: 945 IATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1004
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 ++ SK F +R + E I A+ +LRKEAR+W + + L +ASAWYH Sbjct: 1005 MKASKTFDRR--KDAEAISVAVRALRKEARAWFKRRNDID---------DMLPKASAWYH 1053
Query: 64 VTYHPDY 44 VTYHP Y Sbjct: 1054 VTYHPTY 1060
>tr|Q6L3V2|Q6L3V2_SOLDE RNA dependent RNA polymerase family protein OS=Solanum demissum GN=SDM1_34t00002 PE=4 SV=2 Length = 963
Score = 99.8 bits (247), Expect = 6e-20 Identities = 57/127 (44%), Positives = 77/127 (60%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I+ FTR+ A RSYD +LE GF Y++EA K YD KL +LM Y +K+EAE+ +G I Sbjct: 794 IAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 853
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 ++ SK F +R + E I A+ +LRKEAR+W + + L +ASAWYH Sbjct: 854 MKASKTFDRR--KDAEAISVAVRALRKEARTWFKRRNDID---------DMLPKASAWYH 902
Query: 64 VTYHPDY 44 VTYHP Y Sbjct: 903 VTYHPTY 909
>tr|Q6L3P6|Q6L3P6_SOLDE RNA-directed RNA polymerase, putative OS=Solanum demissum GN=SDM1_42t00020 PE=4 SV=2 Length = 1180
Score = 99.8 bits (247), Expect = 6e-20 Identities = 57/127 (44%), Positives = 77/127 (60%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I+ FTR+ A RSYD +LE GF Y++EA K YD KL +LM Y +K+EAE+ +G I Sbjct: 1011 IAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1070
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 ++ SK F +R + E I A+ +LRKEAR+W + + L +ASAWYH Sbjct: 1071 MKASKTFDRR--KDAEAISVAVRALRKEARTWFKRRNDID---------DMLPKASAWYH 1119
Query: 64 VTYHPDY 44 VTYHP Y Sbjct: 1120 VTYHPTY 1126
>tr|A4UV17|A4UV17_SOLTU Putative RNA-dependent RNA-polymerase OS=Solanum tuberosum PE=4 SV=1 Length = 1115
Score = 99.8 bits (247), Expect = 6e-20 Identities = 57/127 (44%), Positives = 77/127 (60%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I+ FTR+ A RSYD +LE GF Y++EA K YD KL +LM Y +K+EAE+ +G I Sbjct: 946 IAIFTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1005
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 ++ SK F +R + E I A+ +LRKEAR+W + + L +ASAWYH Sbjct: 1006 MKASKTFDRR--KDAEAISVAVRALRKEARTWFKRRNDID---------DMLPKASAWYH 1054
Query: 64 VTYHPDY 44 VTYHP Y Sbjct: 1055 VTYHPTY 1061
>tr|Q6L3W8|Q6L3W8_SOLDE RNA-directed RNA polymerase, putative OS=Solanum demissum GN=SDM1_32t00007 PE=4 SV=2 Length = 1139
Score = 99.4 bits (246), Expect = 8e-20 Identities = 57/127 (44%), Positives = 77/127 (60%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I+ FTR+ A RSYD +LE GF Y++EA K YD KL +LM Y +K+EAE+ +G I Sbjct: 970 IAIFTRDVARRSYDVDLEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGIKTEAEILSGGI 1029
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 ++ SK F +R + E I A+ +LRKEAR+W + + L +ASAWYH Sbjct: 1030 MKTSKTFDRR--KDAEAISIAVRALRKEARTWFKRRNDID---------DMLPKASAWYH 1078
Query: 64 VTYHPDY 44 VTYHP Y Sbjct: 1079 VTYHPTY 1085
>tr|A7P3W5|A7P3W5_VITVI Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030602001 PE=4 SV=1 Length = 1121
Score = 99.4 bits (246), Expect = 8e-20 Identities = 58/127 (45%), Positives = 79/127 (62%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I SFTR+ A +SYD ++E GF Y+ +A K+ YD KL +LM Y +K+E+E+ +G I Sbjct: 948 IRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSI 1007
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 +R+SK F +R + E I A+ SLRKEAR+W D+V +ASAWYH Sbjct: 1008 MRMSKSFDRR--KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDV----YAKASAWYH 1061
Query: 64 VTYHPDY 44 VTYHPDY Sbjct: 1062 VTYHPDY 1068
>tr|A5AM83|A5AM83_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039922 PE=4 SV=1 Length = 654
Score = 99.4 bits (246), Expect = 8e-20 Identities = 58/127 (45%), Positives = 79/127 (62%) Frame = -1
Query: 424 ISSFTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHI 245 I SFTR+ A +SYD ++E GF Y+ +A K+ YD KL +LM Y +K+E+E+ +G I Sbjct: 481 IRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSI 540
Query: 244 LRISKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYH 65 +R+SK F +R + E I A+ SLRKEAR+W D+V +ASAWYH Sbjct: 541 MRMSKSFDRR--KDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDV----YAKASAWYH 594
Query: 64 VTYHPDY 44 VTYHPDY Sbjct: 595 VTYHPDY 601
>tr|Q0KIK9|Q0KIK9_SOLTU RNA-directed RNA polymerase, putative OS=Solanum tuberosum GN=STB1_54t00003 PE=4 SV=1 Length = 1050
Score = 99.0 bits (245), Expect = 1e-19 Identities = 56/124 (45%), Positives = 75/124 (60%) Frame = -1
Query: 415 FTREEAVRSYDEELEFAGFGVYLEEAKALKNCYDEKLLDLMYQYDVKSEAEMFTGHILRI 236 FTR+ A RSYD +LE GF Y++EA K YD KL +LM Y +K+EAE+ +G I++ Sbjct: 884 FTRDVARRSYDADLEVDGFEDYIDEAFDYKTEYDNKLGNLMEYYGIKTEAEILSGGIMKT 943
Query: 235 SKWFRKRPGEVKERIMRAMSSLRKEARSWLRNEYXXXXXXXDEVSYEQLKRASAWYHVTY 56 SK F +R + E I A+ +LRKEAR+W + + L +ASAWYHVTY Sbjct: 944 SKTFDRR--KDAEAISIAVRALRKEARTWFKRRNDID---------DMLPKASAWYHVTY 992
Query: 55 HPDY 44 HP Y Sbjct: 993 HPTY 996
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