| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917287|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_G07.
(505 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protei... 47 4e-05
sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protei... 47 5e-05
sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protei... 46 9e-05
sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protei... 46 9e-05
sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protei... 45 1e-04
sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protei... 45 1e-04
sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containi... 44 4e-04
sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protei... 43 7e-04
sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protei... 43 7e-04
sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protei... 43 0.001
sp|Q8S9M4|PP198_ARATH Pentatricopeptide repeat-containing protei... 43 0.001
sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protei... 42 0.001
sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protei... 42 0.001
sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9LRV9|PP228_ARATH Pentatricopeptide repeat-containing protei... 42 0.002
sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containi... 42 0.002
sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protei... 41 0.004
sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protei... 41 0.004
sp|Q9LFL5|PP390_ARATH Putative pentatricopeptide repeat-containi... 40 0.006
sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protei... 40 0.006
sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protei... 40 0.008
sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protei... 40 0.008
sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protei... 39 0.011
sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protei... 39 0.011
sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protei... 39 0.011
sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protei... 39 0.011
sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protei... 39 0.011
sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protei... 39 0.014
sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containi... 39 0.014
sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protei... 39 0.018
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein
At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 47.4 bits (111), Expect = 4e-05
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQL-TFVDDVAWRTIMDSCQKWGNVNLGRHA 352
+ CMV LLGR G LNKA I ++ T + WR+++ C K GNV L HA
Sbjct: 694 YVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHA 745
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein
At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 47.0 bits (110), Expect = 5e-05
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTFVDD-VAWRTIMDSCQKWGNVNLGRHAFQHI 340
CMVDL GR+G L KA ICQ+ + WRT++ +C GN+ L Q +
Sbjct: 412 CMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRL 465
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein
At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 46.2 bits (108), Expect = 9e-05
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTFV-DDVAWRTIMDSCQKWGNVNLGR 358
CMVDLLGR+G L++A I + DDV W+ ++ +C+ GNV +G+
Sbjct: 416 CMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGK 463
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein
At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 46.2 bits (108), Expect = 9e-05
Identities = 20/50 (40%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTFVDD-VAWRTIMDSCQKWGNVNLGRHA 352
CMVD+LGR G L +A + + + + + WRT++ +C+ +GNV LG++A
Sbjct: 421 CMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYA 470
>sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein
At1g26900, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E54 PE=2 SV=1
Length = 572
Score = 45.4 bits (106), Expect = 1e-04
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTFVDD-VAWRTIMDSCQKWGNVNLGRHAFQHIA 337
C+VDLLGR G L +A I L D AWR ++ +C+ +GN +LG +A
Sbjct: 472 CVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLAACRVYGNADLGESVMMRLA 526
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial OS=Arabidopsis thaliana
GN=PCMP-E86 PE=2 SV=1
Length = 768
Score = 45.4 bits (106), Expect = 1e-04
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = -2
Query: 501 TCMVDLLGRTGALNKAAVRICQLTFVDDVA-WRTIMDSCQKWGNVNLGRHAFQHI 340
+C+VDLL R G LN+A I ++ DV W+T++ +C+ GNV+L + A ++I
Sbjct: 614 SCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENI 668
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing
protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43
PE=3 SV=1
Length = 706
Score = 43.9 bits (102), Expect = 4e-04
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTFV-DDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
CMVDLL R G L+ A I ++++ DDV W T++ +C+ G++ GR A + I
Sbjct: 553 CMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAKGDIERGRRAAERI 606
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein
At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 43.1 bits (100), Expect = 7e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTF-VDDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
C+VDLLGR G L +A I + +DV WRT + C+ N+ LG+ A Q +
Sbjct: 376 CLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQEL 429
>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein
At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
Length = 534
Score = 43.1 bits (100), Expect = 7e-04
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQLTFVDDV-AWRTIMDSCQKWGNVNLGRHAFQHIA 337
+ CMVDLLGR G L +A I + D+ W ++ +C+ GN+ L R A +H+A
Sbjct: 428 YACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKHLA 484
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein
At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTF-VDDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
C+VDLLGR L+KA I + D WRT++ +C+ G+V LG H+
Sbjct: 360 CVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHL 413
|
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917287|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_G07.
(505 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A7PSZ8|A7PSZ8_VITVI Chromosome chr8 scaffold_29, whole genome... 52 2e-05
tr|A7R627|A7R627_VITVI Chromosome undetermined scaffold_1140, wh... 50 5e-05
tr|A7R3F3|A7R3F3_VITVI Chromosome undetermined scaffold_518, who... 50 5e-05
tr|A7QTX0|A7QTX0_VITVI Chromosome undetermined scaffold_171, who... 50 6e-05
tr|A7R0U6|A7R0U6_VITVI Chromosome undetermined scaffold_324, who... 50 8e-05
tr|A2Q4A7|A2Q4A7_MEDTR Tetratricopeptide-like helical OS=Medicag... 50 8e-05
tr|A7QUT6|A7QUT6_VITVI Chromosome chr1 scaffold_180, whole genom... 49 1e-04
tr|A7QW05|A7QW05_VITVI Chromosome chr2 scaffold_196, whole genom... 49 2e-04
tr|A5BZ17|A5BZ17_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04
tr|A7NWE8|A7NWE8_VITVI Chromosome chr5 scaffold_2, whole genome ... 48 2e-04
tr|Q0ZR48|Q0ZR48_THEHA Putative uncharacterized protein OS=Thell... 48 3e-04
tr|A7PD58|A7PD58_VITVI Chromosome chr17 scaffold_12, whole genom... 47 4e-04
tr|A2Q222|A2Q222_MEDTR Tetratricopeptide-like helical OS=Medicag... 47 4e-04
tr|A7PQX8|A7PQX8_VITVI Chromosome chr6 scaffold_25, whole genome... 47 5e-04
tr|A7PMY8|A7PMY8_VITVI Chromosome chr14 scaffold_21, whole genom... 47 5e-04
tr|A5BV08|A5BV08_VITVI Putative uncharacterized protein OS=Vitis... 47 5e-04
tr|A7PJW3|A7PJW3_VITVI Chromosome chr12 scaffold_18, whole genom... 47 7e-04
tr|A7PEI5|A7PEI5_VITVI Chromosome chr11 scaffold_13, whole genom... 47 7e-04
tr|Q8LQE8|Q8LQE8_ORYSJ Pentatricopeptide (PPR) repeat-containing... 46 9e-04
tr|B8BC26|B8BC26_ORYSI Putative uncharacterized protein OS=Oryza... 46 9e-04
tr|A7PT41|A7PT41_VITVI Chromosome chr8 scaffold_29, whole genome... 46 9e-04
tr|A5B8S4|A5B8S4_VITVI Putative uncharacterized protein OS=Vitis... 46 9e-04
tr|A3BUF1|A3BUF1_ORYSJ Putative uncharacterized protein OS=Oryza... 46 9e-04
tr|A3B7R9|A3B7R9_ORYSJ Putative uncharacterized protein OS=Oryza... 46 9e-04
tr|A2WWE8|A2WWE8_ORYSI Putative uncharacterized protein OS=Oryza... 46 9e-04
tr|Q0DC87|Q0DC87_ORYSJ Os06g0472300 protein (Fragment) OS=Oryza ... 45 0.002
tr|B8B213|B8B213_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002
tr|B7EQK7|B7EQK7_ORYSJ cDNA clone:J023104D09, full insert sequen... 45 0.002
tr|A3BBQ5|A3BBQ5_ORYSJ Putative uncharacterized protein OS=Oryza... 45 0.002
tr|A7QJF8|A7QJF8_VITVI Chromosome chr8 scaffold_106, whole genom... 45 0.002
>tr|A7PSZ8|A7PSZ8_VITVI Chromosome chr8 scaffold_29, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023152001
PE=4 SV=1
Length = 641
Score = 52.0 bits (123), Expect = 2e-05
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Frame = -2
Query: 501 TCMVDLLGRTGALNKAAVRICQLTFVDD-VAWRTIMDSCQKWGNVNLGRHAFQHI 340
+CMVDLL R G LN+A I Q+ F D V W+T++ +C+ GNV++G+ A ++I
Sbjct: 535 SCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENI 589
>tr|A7R627|A7R627_VITVI Chromosome undetermined scaffold_1140, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00007922001 PE=4 SV=1
Length = 803
Score = 50.4 bits (119), Expect = 5e-05
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQLTFVDD-VAWRTIMDSCQKWGNVNLGRHAFQHI 340
+ CMVDLLGR+G L +A I + + D + WRT++ +C+ GN LGRHA + I
Sbjct: 582 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 637
>tr|A7R3F3|A7R3F3_VITVI Chromosome undetermined scaffold_518, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00013634001 PE=4 SV=1
Length = 1029
Score = 50.4 bits (119), Expect = 5e-05
Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQLTFVDD-VAWRTIMDSCQKWGNVNLGRHAFQHI 340
+ CMVDLLGR+G L +A I + + D + WRT++ +C+ GN LGRHA + I
Sbjct: 797 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 852
>tr|A7QTX0|A7QTX0_VITVI Chromosome undetermined scaffold_171, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00006516001 PE=4 SV=1
Length = 737
Score = 50.1 bits (118), Expect = 6e-05
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQLTFVDD-VAWRTIMDSCQKWGNVNLGRHAFQHI 340
+ CMVDLLGR+G L +A I + + D + WRT++ +C GN LGRHA + I
Sbjct: 505 YACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACHVHGNTELGRHAAEMI 560
>tr|A7R0U6|A7R0U6_VITVI Chromosome undetermined scaffold_324, whole
genome shotgun sequence (Fragment) OS=Vitis vinifera
GN=GSVIVT00011626001 PE=4 SV=1
Length = 718
Score = 49.7 bits (117), Expect = 8e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQLTFVDDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
+ CMVDLLGR G L +A + I Q+ D V WRT++ +C+ G+V + + +
Sbjct: 486 YACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRV 540
>tr|A2Q4A7|A2Q4A7_MEDTR Tetratricopeptide-like helical OS=Medicago
truncatula GN=MtrDRAFT_AC157375g3v1 PE=4 SV=1
Length = 558
Score = 49.7 bits (117), Expect = 8e-05
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQ-LTFVDDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
+TCMVDLLGR G L KA I + T D W +++ +C+ +GNV LG A +H+
Sbjct: 450 YTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAACRVYGNVELGEIAARHL 505
>tr|A7QUT6|A7QUT6_VITVI Chromosome chr1 scaffold_180, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006973001
PE=4 SV=1
Length = 684
Score = 48.9 bits (115), Expect = 1e-04
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -2
Query: 504 HTCMVDLLGRTGALNKAAVRICQLTF-VDDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
+TCMVDLLGR G LN+A I + D V W +++ +C+ GN+ +G+HA + +
Sbjct: 526 YTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKL 581
>tr|A7QW05|A7QW05_VITVI Chromosome chr2 scaffold_196, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00007631001
PE=4 SV=1
Length = 586
Score = 48.5 bits (114), Expect = 2e-04
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTFV-DDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
CMVDLLGR G L ++ I + DDV W+ ++ +C+ GNV +G+ +H+
Sbjct: 356 CMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 409
>tr|A5BZ17|A5BZ17_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_029899 PE=4 SV=1
Length = 613
Score = 48.5 bits (114), Expect = 2e-04
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTFV-DDVAWRTIMDSCQKWGNVNLGRHAFQHI 340
CMVDLLGR G L ++ I + DDV W+ ++ +C+ GNV +G+ +H+
Sbjct: 378 CMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 431
>tr|A7NWE8|A7NWE8_VITVI Chromosome chr5 scaffold_2, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019892001
PE=4 SV=1
Length = 694
Score = 48.1 bits (113), Expect = 2e-04
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2
Query: 498 CMVDLLGRTGALNKAAVRICQLTF-VDDVAWRTIMDSCQKWGNVNLGRHAFQHIA 337
CM+DLLGR G L +AA I ++ D V W T++ +C+ GNV +G A +++A
Sbjct: 592 CMIDLLGRAGRLKEAAEMIRKMPMKADVVIWGTLLAACRTHGNVEIGERAAENLA 646
|