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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917291
Clone id YMU001_000098_H01
Library
Length 445
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_H01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCGAATTCTTCCAGTTTTTTTTTTTAGTAGCAAGTGAAATGGCATTAGC
TCATCAGCTCCATCATATTATGCATCAAGAGAAAACGATATCATTGAAGCAATTGAAGCC
CAATAGTATTATGTACCATTGCATAAACATTTATTCGCAGACCTTGCAGTCTTACCAGTT
GAAAAAGATAAGTGGAGGCAGGACTCCTCCACAGGCCAGGCAATTTACAACTTTCCAGGA
AAATAAGACCTGCGCAGATGCAGACCCCAAAACAAGCAACACCCACAAGCACCATCAGAC
AGCTGATCAATTTTGACGACCATCTTAAACTGTTTGAGTAGACAAGTCCTCCGGAAATAA
AGATAAGGCCAATTAGACAGCCACGAAGCACAAACCAGGTAGACCCCTTGCAGAAATCCA
AATCTCATAGAAGACGAATTCCATA
■■Homology search results ■■ -
sp_hit_id O46236
Definition sp|O46236|HUNB_DROCR Protein hunchback (Fragments) OS=Drosophila crassifemur
Align length 64
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917291|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_H01.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O46236|HUNB_DROCR Protein hunchback (Fragments) OS=Drosophila...    31   1.7  
sp|P36028|NFT1_YEAST ABC transporter NFT1 OS=Saccharomyces cerev...    30   2.9  
sp|Q502M8|EXOD1_DANRE Exonuclease domain-containing protein 1 OS...    30   3.8  
sp|O46254|HUNB_SCAAL Protein hunchback (Fragments) OS=Scaptomyza...    30   3.8  
sp|O28335|Y1944_ARCFU Uncharacterized protein AF_1944 OS=Archaeo...    30   4.9  
sp|Q8SSS9|QKGA_DICDI Probable serine/threonine-protein kinase qk...    29   6.4  
sp|Q5UPQ0|YR757_MIMIV Putative F-box protein R757 OS=Acanthamoeb...    29   8.4  
sp|P71360|Y878_HAEIN Uncharacterized transporter HI0878 OS=Haemo...    29   8.4  
sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus...    29   8.4  

>sp|O46236|HUNB_DROCR Protein hunchback (Fragments) OS=Drosophila
           crassifemur GN=hb PE=3 SV=2
          Length = 190

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 180 LHRPGNLQLSRKIRPAQMQTPKQATPTSTIRQLINFDDHLKLFE*TSPPEIKIRPIRQPR 359
           L  P  + +   +RPA   TP  ATPT+T   ++    + KL   T  P + + P + P 
Sbjct: 106 LPNPMQIIMPANMRPATQPTPTIATPTTTSSAIVALQTNDKLQALT--PPMDVTPPKSPA 163

Query: 360 STNQ 371
            + Q
Sbjct: 164 KSQQ 167


>sp|P36028|NFT1_YEAST ABC transporter NFT1 OS=Saccharomyces
           cerevisiae GN=NFT1 PE=1 SV=2
          Length = 1558

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +2

Query: 119 NIYSQTLQSYQLKKISGGRTPPQARQFTTFQENKTCADADPKTSNTHK 262
           NIYS+TL+   LK  +   T  Q    T+F+EN   ++A+P+  ++ K
Sbjct: 389 NIYSKTLRRTILKDST---TSLQKNASTSFEENPDSSEAEPRKKSSRK 433


>sp|Q502M8|EXOD1_DANRE Exonuclease domain-containing protein 1
           OS=Danio rerio GN=exod1 PE=2 SV=1
          Length = 555

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 118 KHLFADLAVLPVEKDKWRQDSSTGQAIYNFP 210
           K  F+ L ++  E   WR+ SS+GQ I  FP
Sbjct: 29  KQRFSFLIIIDFESTCWREKSSSGQEIIEFP 59


>sp|O46254|HUNB_SCAAL Protein hunchback (Fragments) OS=Scaptomyza
           albovittata GN=hb PE=3 SV=2
          Length = 171

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 180 LHRPGNLQLSRKIRPAQMQTPKQATPTSTIRQLINFDDHLKLFE*TSPPEI 332
           L  P  + +   +RPA   TP  ATPT+T   ++    + KL   T P ++
Sbjct: 87  LPNPMQIIMPANMRPATQPTPTIATPTTTSSAIVALQSNDKLQALTPPMDV 137


>sp|O28335|Y1944_ARCFU Uncharacterized protein AF_1944
           OS=Archaeoglobus fulgidus GN=AF_1944 PE=4 SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
 Frame = -1

Query: 418 YGIRLL*DLDFCKGSTWFVL-------RGCL-IGLIFISGGLVYSNSLRWSSKLISCLMV 263
           Y  R+  DLD C    WF+         G L +G + I     Y  +  W  K  +CL  
Sbjct: 49  YAARIARDLDRCNEYVWFLSDEITVPDHGRLDLGELRIGKDANYDFTAYWQEKRHTCL-- 106

Query: 262 LVGVACFGVCICAGLI 215
                 FG+C C G +
Sbjct: 107 ------FGLCACGGSV 116


>sp|Q8SSS9|QKGA_DICDI Probable serine/threonine-protein kinase qkgA
           OS=Dictyostelium discoideum GN=qkgA-1 PE=3 SV=2
          Length = 1553

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/76 (25%), Positives = 39/76 (51%)
 Frame = +2

Query: 41  LHHIMHQEKTISLKQLKPNSIMYHCINIYSQTLQSYQLKKISGGRTPPQARQFTTFQENK 220
           L H++HQ++ I+    KP+   +  IN+Y+   QSY  + +S       + QF  ++ ++
Sbjct: 148 LEHLLHQQQPITSVGSKPS--FFVIINLYNDDRQSYMSEIVSFA----GSFQFIEWRNDE 201

Query: 221 TCADADPKTSNTHKHH 268
           +  +    +SN   +H
Sbjct: 202 SWKEVFKLSSNLLTYH 217


>sp|Q5UPQ0|YR757_MIMIV Putative F-box protein R757 OS=Acanthamoeba
           polyphaga mimivirus GN=MIMI_R757 PE=4 SV=1
          Length = 650

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/58 (25%), Positives = 23/58 (39%)
 Frame = +2

Query: 95  NSIMYHCINIYSQTLQSYQLKKISGGRTPPQARQFTTFQENKTCADADPKTSNTHKHH 268
           N+I+ +  N +S  L       I    +  Q R FT    N  C D     + ++ HH
Sbjct: 411 NNILQNDTNYFSNILNMESANSIYKAASKYQQRGFTCVSLNDLCTDIQGNIAKSYDHH 468


>sp|P71360|Y878_HAEIN Uncharacterized transporter HI0878
           OS=Haemophilus influenzae GN=HI0878 PE=3 SV=1
          Length = 306

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = -1

Query: 370 WFVLRGCLIGLIFISGGLVYSNSLRWSSKLISCLMVLVGVACFGVCICAGLIFLESCKL 194
           W +L G +IGL   S  L++S+SL +    ++   + + ++ FG+ IC  LIF E   L
Sbjct: 71  WIMLIG-VIGLT--SNFLLFSSSLNYIEPSVA--QIFIHLSSFGMLICGVLIFKEKLGL 124


>sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=nst1 PE=3 SV=1
          Length = 1201

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 13  SK*NGISSSAPSYYASRENDIIEAIEAQ*YYVPLH 117
           S+ NG+S +AP+ + S ++D+ E    + YY  +H
Sbjct: 70  SEQNGLSPTAPASHVSDDHDLDERANGETYYEEIH 104
tr_hit_id A0ZD24
Definition tr|A0ZD24|A0ZD24_NODSP Putative uncharacterized protein OS=Nodularia spumigena CCY 9414
Align length 76
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917291|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_H01.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0ZD24|A0ZD24_NODSP Putative uncharacterized protein OS=Nodul...    39   0.17 
tr|Q4C311|Q4C311_CROWT TPR repeat OS=Crocosphaera watsonii GN=Cw...    34   3.2  
tr|A5ZUV3|A5ZUV3_9FIRM Putative uncharacterized protein OS=Rumin...    34   3.2  
tr|Q21F28|Q21F28_SACD2 Putative uncharacterized protein OS=Sacch...    33   5.4  
tr|B6BAL0|B6BAL0_9RHOB Glycine betaine/proline ABC transporter, ...    33   7.0  
tr|B0X6W4|B0X6W4_CULQU Tmc6 protein OS=Culex quinquefasciatus GN...    33   7.0  
tr|Q8DGF8|Q8DGF8_THEEB Elongation factor EF-G OS=Thermosynechoco...    33   7.1  
tr|Q025S6|Q025S6_SOLUE Putative uncharacterized protein OS=Solib...    33   9.2  
tr|Q54UJ3|Q54UJ3_DICDI Paired amphipathic helix (PAH) containing...    33   9.2  

>tr|A0ZD24|A0ZD24_NODSP Putative uncharacterized protein
           OS=Nodularia spumigena CCY 9414 GN=N9414_19572 PE=4 SV=1
          Length = 264

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
 Frame = +3

Query: 168 EAGLLHRPGNLQLSRKI--RPAQMQTPK-QATPTSTIRQLINFDDHLKLFE*TSPPEIKI 338
           E GLLH    LQL R +  RP+ M  PK + T    I+QL    + LKL + +S P   +
Sbjct: 97  ENGLLHHAHRLQLERHLSRRPSAMPPPKRRVTQQELIKQLQIMANQLKLVQKSSKP---V 153

Query: 339 RPIRQPRSTNQVDPLQ 386
           RP RQ    N    L+
Sbjct: 154 RPKRQSSDQNMRQALE 169


>tr|Q4C311|Q4C311_CROWT TPR repeat OS=Crocosphaera watsonii
           GN=CwatDRAFT_3572 PE=4 SV=1
          Length = 273

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -1

Query: 310 SNSLRWSSKLISCLMVLVGVACFGVCICAGLIFLESCKLPGLWRSPASTYLFQ 152
           S++++W +++ +     +GV   G+C+  G +FL    LP  W+ P+   L +
Sbjct: 142 SHAIKWRTRIFTA----IGVGLGGICVGIGGVFLLGDALPSWWQQPSQLELLE 190


>tr|A5ZUV3|A5ZUV3_9FIRM Putative uncharacterized protein
           OS=Ruminococcus obeum ATCC 29174 GN=RUMOBE_02790 PE=4
           SV=1
          Length = 363

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
 Frame = -1

Query: 409 RLL*DLDFCKGST----WF--VLRGCLIGLIFISGGLVYSNSLRWSSKLISCLMVLVGVA 248
           RLL ++ F K S+    W+  V+ GC I L F+S  L  S +LR  S     L+ ++G+ 
Sbjct: 116 RLLLEMLFLKSSSLSHMWYMPVILGCYIALPFLSRLLQTSTNLRQYS-----LLYVLGII 170

Query: 247 CFGVCICAGLIFLESCKLPGLWRSPASTYLF 155
            F +   A + F E+  +  ++RS   T L+
Sbjct: 171 IFFIIPTANVFFKEAITVIPVFRSQLDTGLW 201


>tr|Q21F28|Q21F28_SACD2 Putative uncharacterized protein
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=Sde_3446 PE=4 SV=1
          Length = 828

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = -1

Query: 340 LIFISGGLVYSNSLRWSSKLISCLMVL---VGVACFGVCICAGLIFLES----CKLPGLW 182
           L ++ G L     + W S+ +   +VL   + V C G+ ICA LI L S     KL G W
Sbjct: 391 LSWLPGVLAIIGLIFWYSQSLQLTLVLTLGLAVCCIGISICARLIILASRVTTKKLTGSW 450

Query: 181 R 179
           R
Sbjct: 451 R 451


>tr|B6BAL0|B6BAL0_9RHOB Glycine betaine/proline ABC transporter,
           permease protein OS=Rhodobacterales bacterium Y4I
           GN=RBY4I_568 PE=4 SV=1
          Length = 679

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = -1

Query: 364 VLRGCLIGLIFISGGLVYSNSLRWSSKLISCLMVLVGVACFGVCICAGLIFLESCKLPGL 185
           VL   L+G I +SG         W   L+S  + L G A F   +  G I L S   PG+
Sbjct: 469 VLTVVLLGTILVSG--------LWERALLS--LYLSGAAVFACAVMGGAIGLASAVSPGV 518

Query: 184 WR 179
           WR
Sbjct: 519 WR 520


>tr|B0X6W4|B0X6W4_CULQU Tmc6 protein OS=Culex quinquefasciatus
           GN=CpipJ_CPIJ014971 PE=4 SV=1
          Length = 734

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -1

Query: 322 GLVYSNSLRWSSKLIS-CLMVLVGVACFGVCICAGLIFLESCKLPG-LWRSPASTYLF 155
           GLVY+ +L W   L S  L V+V V  F +     L  +  CK P  LWRS  +  LF
Sbjct: 486 GLVYNQTLLWFGLLFSPMLCVIVAVKLFLMFYVKKLSLIYFCKPPSKLWRSSQTQTLF 543


>tr|Q8DGF8|Q8DGF8_THEEB Elongation factor EF-G
           OS=Thermosynechococcus elongatus (strain BP-1) GN=fus
           PE=3 SV=1
          Length = 664

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 222 PAQMQTPKQATPTSTIRQLINFDDHL--KLFE*TSPPEIKI 338
           P+++Q  +QA     +  L N+DDHL  +L E  +PPE +I
Sbjct: 187 PSELQAVEQAARAELLEALANYDDHLLEELLEDIAPPESEI 227


>tr|Q025S6|Q025S6_SOLUE Putative uncharacterized protein
           OS=Solibacter usitatus (strain Ellin6076) GN=Acid_2253
           PE=4 SV=1
          Length = 638

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = -1

Query: 379 GSTWFVLR---GCLIGLIFISGGLVYS-NSLRWSSKLISCLMVLVGVACFGVCICAGLIF 212
           G  WFV        +    +  GL ++ +S RW++ LI+ L +L+ +  FG C+      
Sbjct: 334 GPMWFVAAHVVNAAVAWAAVCLGLGWTVSSGRWNASLIASLKLLLALLVFGCCLADRSAI 393

Query: 211 LESCKLPGLW 182
           L +  LP LW
Sbjct: 394 LMNYGLPLLW 403


>tr|Q54UJ3|Q54UJ3_DICDI Paired amphipathic helix (PAH) containing
           protein OS=Dictyostelium discoideum GN=DDB_0216409 PE=4
           SV=1
          Length = 1934

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 201 QLSRKIRPAQMQTPKQATPTSTIRQLINFDDHLKLFE*TSPPEIKIRPIRQPRSTNQ-VD 377
           QL ++ +  Q Q  +Q  P S IRQ   FD+     E     ++K++  +QPR  NQ +D
Sbjct: 387 QLQQQQQLQQQQQQQQPAPQSPIRQQQQFDNAFYFLE-----QVKMQFSKQPRIYNQFLD 441

Query: 378 PLQKSKSHRRRIP 416
            ++  K+H    P
Sbjct: 442 IMKDLKAHNIDTP 454