BP917293
Clone id YMU001_000098_H03
Library
Length 146
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AAAAGGAACAGTGCAGGCTGCTGCCATGTCATCAACCTGGCGTCCATACATGGCTGCCGT
CCGTACCGCTGACACGTCCTCAGTCCCATCTGTGCAGATGTACAAATGCCAATCCTATCC
ATACAGTAGTATAGCCACCACGTGCC
■■Homology search results ■■ -
sp_hit_id Q8BXJ2
Definition sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus musculus
Align length 41
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917293|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_H03.
(146 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus... 31 2.2
sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Hom... 29 8.2
sp|Q9XBQ3|ABFA_BACST Alpha-N-arabinofuranosidase OS=Bacillus ste... 29 8.2

>sp|Q8BXJ2|TREF1_MOUSE Transcriptional-regulating factor 1 OS=Mus
musculus GN=Trerf1 PE=2 SV=1
Length = 1205

Score = 30.8 bits (68), Expect = 2.2
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3

Query: 18 LLPCHQPGVHTWLPSVPLT-RPQSHLCRCTNANPIHTVV*P 137
L+ H PGVH LP PLT P+ LCR ++ + + V P
Sbjct: 734 LISGHGPGVHPQLPLTPLTPTPRVLLCRSSSIDGSNVTVTP 774


>sp|Q96PN7|TREF1_HUMAN Transcriptional-regulating factor 1 OS=Homo
sapiens GN=TRERF1 PE=1 SV=1
Length = 1200

Score = 28.9 bits (63), Expect = 8.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3

Query: 18 LLPCHQPGVHTWLPSVPLT-RPQSHLCRCTNANPIHTVV*P 137
L+ H PG H LP PLT P+ LCR + + + V P
Sbjct: 728 LISGHGPGAHPQLPLTPLTPTPRVLLCRSNSIDGSNVTVTP 768


>sp|Q9XBQ3|ABFA_BACST Alpha-N-arabinofuranosidase OS=Bacillus
stearothermophilus GN=abfA PE=1 SV=4
Length = 502

Score = 28.9 bits (63), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1

Query: 92 QMGLRTCQRYGRQPCMDARLMTWQQPALFL 3
Q+G +T YGR C A++M W P + L
Sbjct: 181 QIGHKTAVEYGRIACEAAKVMKWVDPTIEL 210


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917293|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_H03.
(146 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******