BP917294
Clone id YMU001_000098_H04
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000098_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTGGCCCCTTCTATGGTTAATGTTTGGTTTGCATAGTCATCAACAGCATGTGTTGTTCTC
AACCATGGGCGCCCTAGCAGCATCCCATATGCCCCTTGCACATCCAGAACTGAGAAACTG
GTTTTAAATTTTTCCCTCCAAACTCTTATCTCATATTTTCAATCATACACGTCGCTTGTA
CCACTCTGTGATCTGCCATTCGCACTTTAAAGGGTGCTGGCTTGAGATTCGTGATACCCA
GTCTCTGTAGGAGATGAACTCCCATTATGTTGACTCCTGCTCCTCCATCCAAGATAACAC
TTGAGAGAGGTTCCCACTGCTTCCTAACCTTGTAGTCCACTTGAATGAGTGGAACTTAAT
CATATCGGACGGCCGTCAGGTCCACTGTTCTGGCCTCCGCCTCAGCTTTCCTGCGCTGTC
TGATAAAGTTAGCCACTTCAGGCAAGGTTTATATGATATCCTCCAGCTCTACAATCAACT
TCTGAATTCTAACACAAATTTTCACATGAATTTCTCTCTCTCTCTCGCAGGTACTCG
■■Homology search results ■■ -
sp_hit_id A9WH12
Definition sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
Align length 73
Score (bit) 32.0
E-value 1.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917294|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_H04.
(537 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta OS... 32 1.9
sp|P41834|UFE1_YEAST Syntaxin UFE1 OS=Saccharomyces cerevisiae G... 31 4.3
sp|Q54KD5|Y7399_DICDI P17/29C-like protein DDB_G0287399 OS=Dicty... 30 9.7
sp|Q9Y6N9|USH1C_HUMAN Harmonin OS=Homo sapiens GN=USH1C PE=1 SV=3 30 9.7
sp|Q3MHQ0|USH1C_BOVIN Harmonin OS=Bos taurus GN=USH1C PE=2 SV=1 30 9.7

>sp|A9WH12|RPOB_CHLAA DNA-directed RNA polymerase subunit beta
OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=rpoB PE=3 SV=1
Length = 1227

Score = 32.0 bits (71), Expect = 1.9
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = -2

Query: 380 PDGRPI*LSSTHSSGLQG*EAVGTSLKCYLGWRSRSQHNGSSSPTETGYHESQASTL*SA 201
PDGRP+ + + G+ +G L+ +LGW + ++P G HE Q L
Sbjct: 997 PDGRPVDII-LNPIGVPSRMNIGQILETHLGWAAARLGFRVATPVFDGAHEDQIKDLLVQ 1055

Query: 200 NGRSQSGTSDVYD 162
G G +YD
Sbjct: 1056 AGLPADGKVTLYD 1068


>sp|P41834|UFE1_YEAST Syntaxin UFE1 OS=Saccharomyces cerevisiae
GN=UFE1 PE=1 SV=2
Length = 346

Score = 30.8 bits (68), Expect = 4.3
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3

Query: 532 TCEREREIHVKICVRIQKLIVELEDII*TLPEVANFIRQRRKAEAEARTVDL 377
TCE R+ +K C R+ K +VEL +I + + N++ ++AE D+
Sbjct: 43 TCEMFRDSFIKECARLLKFLVELNKVIKQIEK--NYLDDFNMSDAEKDEFDM 92


>sp|Q54KD5|Y7399_DICDI P17/29C-like protein DDB_G0287399
OS=Dictyostelium discoideum GN=DDB_G0287399 PE=3 SV=1
Length = 486

Score = 29.6 bits (65), Expect = 9.7
Identities = 24/82 (29%), Positives = 35/82 (42%)
Frame = -2

Query: 419 TAQES*GGGQNSGPDGRPI*LSSTHSSGLQG*EAVGTSLKCYLGWRSRSQHNGSSSPTET 240
T S N+ + SS SSG + G+S G +S + +GSSS +
Sbjct: 64 TVSSSGSASNNTSSGSQSGNASSGSSSGSSSGSSSGSSSGSSSGSQSGNASSGSSSSGSS 123

Query: 239 GYHESQASTL*SANGRSQSGTS 174
G AS+ S+ S SG+S
Sbjct: 124 GSQSGNASSGTSSGSSSSSGSS 145


>sp|Q9Y6N9|USH1C_HUMAN Harmonin OS=Homo sapiens GN=USH1C PE=1 SV=3
Length = 552

Score = 29.6 bits (65), Expect = 9.7
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -3

Query: 523 REREIHVKICVRIQKLIVELEDII*TLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLI 344
R+RE+ + + ++L +E I L E RQRRK A+ + R + ++
Sbjct: 308 RQRELQRQELLMQKRLAMESNKI---LQEQQEMERQRRKEIAQKAAEENERYRKEMEQIV 364

Query: 343 QVDYKVRKQWE 311
+ + K +KQWE
Sbjct: 365 EEEEKFKKQWE 375


>sp|Q3MHQ0|USH1C_BOVIN Harmonin OS=Bos taurus GN=USH1C PE=2 SV=1
Length = 551

Score = 29.6 bits (65), Expect = 9.7
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = -3

Query: 523 REREIHVKICVRIQKLIVELEDII*TLPEVANFIRQRRKAEAEARTVDLTAVRYD*VPLI 344
R+RE+ + + ++L +E I L E RQR+K A+ + R + ++
Sbjct: 308 RQRELQRQELLMQKRLAMESNKI---LQEQQEMERQRKKEIAQKAAEENERYRKEMEQIV 364

Query: 343 QVDYKVRKQWE 311
+ + K RKQWE
Sbjct: 365 EEEEKFRKQWE 375


tr_hit_id Q6UUM4
Definition tr|Q6UUM4|Q6UUM4_ORYSJ Putative uncharacterized protein (Putative polyprotein) OS=Oryza sativa subsp. japonica
Align length 60
Score (bit) 38.9
E-value 0.0002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917294|Adiantum capillus-veneris mRNA, clone:
YMU001_000098_H04.
(537 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6UUM4|Q6UUM4_ORYSJ Putative uncharacterized protein (Putativ... 39 2e-04
tr|Q33A45|Q33A45_ORYSJ Retrotransposon protein, putative, unclas... 37 3e-04
tr|Q8S5E4|Q8S5E4_ORYSA Putative uncharacterized protein OSJNBb00... 37 3e-04
tr|Q7XNI8|Q7XNI8_ORYSJ OSJNBb0032D24.5 protein OS=Oryza sativa s... 36 4e-04
tr|Q53KC9|Q53KC9_ORYSJ Retrotransposon protein, putative, unclas... 35 8e-04
tr|Q53KG9|Q53KG9_ORYSJ Retrotransposon protein, putative, unclas... 37 0.001
tr|Q0KIL1|Q0KIL1_SOLDE Gag/pol polyprotein, 3'-partial, putative... 37 0.001
tr|Q7FAL2|Q7FAL2_ORYSJ OSJNBa0042N22.17 protein (B1248C03.3 prot... 36 0.001
tr|Q7G4P3|Q7G4P3_ORYSJ Retrotransposon protein, putative, unclas... 35 0.002
tr|Q8S6X2|Q8S6X2_ORYSA Putative pol polyprotein OS=Oryza sativa ... 36 0.002
tr|Q2QZM9|Q2QZM9_ORYSJ Retrotransposon protein, putative, unclas... 35 0.002
tr|Q33A67|Q33A67_ORYSJ Retrotransposon protein, putative, unclas... 36 0.002
tr|Q7XSP1|Q7XSP1_ORYSJ OSJNBa0070M12.15 protein OS=Oryza sativa ... 35 0.002
tr|Q7XN29|Q7XN29_ORYSJ OSJNBa0083I11.15 protein (OSJNBa0021F22.2... 35 0.002
tr|Q339U0|Q339U0_ORYSJ Retrotransposon protein, putative, unclas... 35 0.002
tr|Q7XNM6|Q7XNM6_ORYSA OSJNBb0068N06.4 protein OS=Oryza sativa G... 37 0.002
tr|Q2QSH4|Q2QSH4_ORYSJ Retrotransposon protein, putative, unclas... 36 0.002
tr|Q2QVZ3|Q2QVZ3_ORYSJ Retrotransposon protein, putative, unclas... 35 0.002
tr|Q2QWF9|Q2QWF9_ORYSJ Retrotransposon protein, putative, unclas... 34 0.003
tr|Q6ASW9|Q6ASW9_ORYSJ Reverse transcriptase (RNA-dependent DNA ... 35 0.003
tr|Q2QQK7|Q2QQK7_ORYSJ Retrotransposon protein, putative, unclas... 35 0.003
tr|Q7XLE6|Q7XLE6_ORYSJ OSJNBa0013A04.23 protein (OSJNBb0069N01.4... 35 0.003
tr|Q01M82|Q01M82_ORYSA H0622G10.2 protein OS=Oryza sativa GN=H06... 35 0.003
tr|Q2QR22|Q2QR22_ORYSJ Retrotransposon protein, putative, unclas... 35 0.004
tr|Q2R2X8|Q2R2X8_ORYSJ Retrotransposon protein, putative, unclas... 35 0.004
tr|Q10I05|Q10I05_ORYSJ Retrotransposon protein, putative, unclas... 35 0.004
tr|Q94LN5|Q94LN5_ORYSJ Putative retroelement pol polyprotein (Re... 35 0.004
tr|Q6AVD1|Q6AVD1_ORYSJ Putative polyprotein OS=Oryza sativa subs... 35 0.004
tr|Q8H8Q2|Q8H8Q2_ORYSJ Putative gag-pol polyprotein (Retrotransp... 35 0.004
tr|Q75HC5|Q75HC5_ORYSJ Putative reverse transcriptase (Retrotran... 35 0.004

>tr|Q6UUM4|Q6UUM4_ORYSJ Putative uncharacterized protein (Putative
polyprotein) OS=Oryza sativa subsp. japonica
GN=OSJNBa0079I01.34 PE=4 SV=1
Length = 760

Score = 38.9 bits (89), Expect(2) = 2e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = -2

Query: 197 GRSQSGTSDVYD*KYEIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
G + S T +V + E+ V + T+FSV+D +G+Y +LLGR W+ + +Q L
Sbjct: 473 GSNPSETKEVLN--VELTVGNKTIPTTFSVIDGKGSYSLLLGRDWIHANCCIPSTMHQCL 530



Score = 28.9 bits (63), Expect(2) = 2e-04
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +++DGGA VN+M ++LG
Sbjct: 431 KPMSKMMVDGGAAVNLMPYTTFRKLG 456


>tr|Q33A45|Q33A45_ORYSJ Retrotransposon protein, putative,
unclassified, expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os10g15340 PE=4 SV=1
Length = 828

Score = 37.4 bits (85), Expect(2) = 3e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -2

Query: 158 KYEIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
K +I V + T+F V+D +G+YG+L GR W+ + + +Q+L
Sbjct: 702 KIKITVGSKTVPTTFFVIDGKGSYGLLHGRDWIHANYCIPSTMHQSL 748



Score = 30.0 bits (66), Expect(2) = 3e-04
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +++DGGA VN+M ++LG
Sbjct: 649 KPMSKILVDGGAAVNLMPYATFRKLG 674


>tr|Q8S5E4|Q8S5E4_ORYSA Putative uncharacterized protein
OSJNBb0047B19.20 OS=Oryza sativa GN=OSJNBb0047B19.20
PE=4 SV=1
Length = 821

Score = 37.4 bits (85), Expect(2) = 3e-04
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -2

Query: 158 KYEIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
K +I V + T+F V+D +G+YG+L GR W+ + + +Q+L
Sbjct: 695 KIKITVGSKTVPTTFFVIDGKGSYGLLHGRDWIHANYCIPSTMHQSL 741



Score = 30.0 bits (66), Expect(2) = 3e-04
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +++DGGA VN+M ++LG
Sbjct: 642 KPMSKILVDGGAAVNLMPYATFRKLG 667


>tr|Q7XNI8|Q7XNI8_ORYSJ OSJNBb0032D24.5 protein OS=Oryza sativa
subsp. japonica GN=OSJNBb0032D24.5 PE=4 SV=1
Length = 1355

Score = 36.2 bits (82), Expect(2) = 4e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -2

Query: 197 GRSQSGTSDVYD*KYEIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
G +QS T V + E+ V + T+F V+D +G+Y +LLGR W+ + Q L
Sbjct: 404 GGNQSETKGVLN--VELTVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMQQCL 461



Score = 30.8 bits (68), Expect(2) = 4e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+PLS +I+DGGA VN+M ++LG
Sbjct: 362 KPLSKMIVDGGAAVNLMPYATFRKLG 387


>tr|Q53KC9|Q53KC9_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os11g22340 PE=4 SV=1
Length = 1497

Score = 34.7 bits (78), Expect(2) = 8e-04
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2

Query: 152 EIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
E+ V + T+F V+D +G+Y +LLGR W+ + +Q L
Sbjct: 577 ELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCL 621



Score = 31.2 bits (69), Expect(2) = 8e-04
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +I+DGGA VN+M + ++LG
Sbjct: 522 KPMSKMIVDGGAAVNLMPYAMFRKLG 547


>tr|Q53KG9|Q53KG9_ORYSJ Retrotransposon protein, putative,
unclassified OS=Oryza sativa subsp. japonica
GN=LOC_Os11g25400 PE=4 SV=1
Length = 1163

Score = 36.6 bits (83), Expect(2) = 0.001
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2

Query: 152 EIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
E+ V + T+F V+D +G+Y +LLGR W+ T + +Q L
Sbjct: 930 ELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHTNCCIPSTMHQCL 974



Score = 28.9 bits (63), Expect(2) = 0.001
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +++DGGA VN+M ++LG
Sbjct: 875 KPMSKMMVDGGAAVNLMPYATFRKLG 900


>tr|Q0KIL1|Q0KIL1_SOLDE Gag/pol polyprotein, 3'-partial, putative
(Fragment) OS=Solanum demissum GN=SDM1_53t00001 PE=4
SV=1
Length = 907

Score = 37.4 bits (85), Expect(2) = 0.001
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2

Query: 149 IRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTLTIE 9
+++ F +F VL++ +Y +LLGRPW+ AV +Q + E
Sbjct: 391 LKIGHVDFTVNFQVLNINASYNLLLGRPWVHRAGAVPSTLHQMVKFE 437



Score = 28.1 bits (61), Expect(2) = 0.001
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -3

Query: 307 LSSVILDGGAGVNIMGVHLLQRLGIT--NLKPAPFKVRMADHRVVQATCMIE 158
++ V++DGG+G NI + LQ+L + ++P VR D A IE
Sbjct: 337 VTRVLIDGGSGANICPLSTLQKLNVNVERVRPNNVCVRAFDGTKTDAIGEIE 388


>tr|Q7FAL2|Q7FAL2_ORYSJ OSJNBa0042N22.17 protein (B1248C03.3 protein)
OS=Oryza sativa subsp. japonica GN=OSJNBa0042N22.17 PE=4
SV=1
Length = 1436

Score = 36.2 bits (82), Expect(2) = 0.001
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -2

Query: 197 GRSQSGTSDVYD*KYEIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
G + S T V + E+ V + TSF V+D +G+Y +LLGR W+ + +Q L
Sbjct: 940 GGNSSETKGVLN--VELTVGSKTIPTSFFVIDGKGSYSLLLGRDWIHVNCCIPSTMHQCL 997



Score = 28.9 bits (63), Expect(2) = 0.001
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +++DGGA VN+M ++LG
Sbjct: 898 KPMSKMMVDGGAAVNLMPYTTFRKLG 923


>tr|Q7G4P3|Q7G4P3_ORYSJ Retrotransposon protein, putative,
unclassified (Reverse transcriptase (RNA-dependent DNA
polymerase), putative) OS=Oryza sativa subsp. japonica
GN=LOC_Os10g11190 PE=4 SV=1
Length = 1383

Score = 34.7 bits (78), Expect(2) = 0.002
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2

Query: 152 EIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
E+ V + T+F V+D +G+Y +LLGR W+ + +Q L
Sbjct: 714 ELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCL 758



Score = 30.0 bits (66), Expect(2) = 0.002
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +I+DGGA VN+M ++LG
Sbjct: 659 KPMSKMIVDGGAAVNLMPYATFRKLG 684


>tr|Q8S6X2|Q8S6X2_ORYSA Putative pol polyprotein OS=Oryza sativa
GN=OSJNBa0082N11.20 PE=4 SV=1
Length = 505

Score = 35.8 bits (81), Expect(2) = 0.002
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -2

Query: 152 EIRVWREKFKTSFSVLDVQGAYGMLLGRPWLRTTHAVDDYANQTL 18
E+ + + T+F ++DVQG+Y ++LGR W+ V +Q L
Sbjct: 386 ELTMGNKTLPTTFFIVDVQGSYNVILGRCWIHANCCVPSTLHQCL 430



Score = 28.9 bits (63), Expect(2) = 0.002
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -3

Query: 313 EPLSSVILDGGAGVNIMGVHLLQRLG 236
+P+S +++D GA VN+M L +RLG
Sbjct: 331 KPVSRMLVDRGAAVNLMPYSLFKRLG 356