BP917307
Clone id YMU001_000099_B05
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CGCGGCCTACAGCAACGCCCATAATCTGTATACAATCGTAGCTCCTTCAACATAATGTCT
CTGACAACCCCAACTTCAGGACTGAAGTCCAGCCGTTGTCGCAACTCCCGTAGGATCCGC
ACAAGAAGCTCAGGTTGGTGGTGAACTCCTACCCAGCATCCATTCACAAAGATCTTGGTT
GCTTGGGAAATGACAGCAGGGGATATTTCCTCACAGTTTTCTGTGCCCCATTCCTCCAAA
GACTCCAATACAAGATTTGCTGCTGACCCCACAGTTATGTATGACATAAGTGCCAAATTT
TTTACGAGGCCACAGGCCTGTCCTTCTGGAGTTTCTGCAGGGCAAATCATTCCCCAATGT
GAATTGTGTAGTTGGCGAGGCTTTGCCAATTTCCCTTCTCGACCAATTGGAGAATTTAGC
CTCCGAAGATGCGACAAAGTAGACGCATAGGTTAGACGGTTCAACACCTGAGAAACACCT
GCACGTACACCAGCTGTGTTTGCTTGGCCCCAGTTTCCAGTGGCTAACGAATACT
■■Homology search results ■■ -
sp_hit_id Q42877
Definition sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
Align length 172
Score (bit) 298.0
E-value 1.0e-80
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917307|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_B05.
(519 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2... 298 1e-80
sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2... 296 4e-80
sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2... 255 8e-68
sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2... 246 6e-65
sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2... 246 6e-65
sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2... 243 5e-64
sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2... 241 1e-63
sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2... 239 6e-63
sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2... 229 6e-60
sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2... 222 7e-58
sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2... 222 9e-58
sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2... 220 3e-57
sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2... 219 5e-57
sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Th... 124 2e-28
sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Th... 120 4e-27
sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC... 114 4e-25
sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC... 113 5e-25
sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Su... 106 6e-23
sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC... 105 2e-22
sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Ac... 104 3e-22
sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC... 104 3e-22
sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC... 103 5e-22
sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS... 98 3e-20
sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS... 98 3e-20
sp|P41558|RPOB2_METVS DNA-directed RNA polymerase subunit B'' OS... 96 1e-19
sp|Q58444|RPOB2_METJA DNA-directed RNA polymerase subunit B'' OS... 96 1e-19
sp|P15352|RPOB2_HALSA DNA-directed RNA polymerase subunit B'' OS... 87 4e-17
sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc... 74 3e-13
sp|Q85FM7|RPOB_ADICA DNA-directed RNA polymerase subunit beta OS... 59 2e-08
sp|Q3ZJ93|RPOB_PSEAK DNA-directed RNA polymerase subunit beta OS... 55 2e-07

>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2
OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1
Length = 1191

Score = 298 bits (763), Expect = 1e-80
Identities = 146/172 (84%), Positives = 155/172 (90%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS W
Sbjct: 450 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 509

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAA +LE LEEWGTEN EEISPAVI QATK
Sbjct: 510 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 569

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNG WVG+H P++LVR LR LR+R+D + EVGVVRDI LKELR+YTDYG
Sbjct: 570 IFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 621


>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2
OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2
Length = 1188

Score = 296 bits (758), Expect = 4e-80
Identities = 145/172 (84%), Positives = 155/172 (90%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS W
Sbjct: 451 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 510

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAA +LE LEEWGTEN EEISP+VI QATK
Sbjct: 511 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATK 570

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNG WVGVH P++LV+ LR LR+R+D + EVGVVRDI LKELR+YTDYG
Sbjct: 571 IFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 622


>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2
OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1
Length = 1170

Score = 255 bits (652), Expect = 8e-68
Identities = 126/173 (72%), Positives = 146/173 (84%), Gaps = 1/173 (0%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWG + + G ++GV+QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+HW
Sbjct: 444 YSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHW 503

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP-AVISQAT 161
G++CP+ETPEGQACGLVKNLA+MSYI+VGSA+ +LE LEEW TEN EEIS + I AT
Sbjct: 504 GIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFSAT 563

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
KIFVNG WVG+HHQP+ L+ LR LR+ D S EV VVRDI KELRLYTD G
Sbjct: 564 KIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDPG 616


>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2
OS=Mus musculus GN=Polr2b PE=2 SV=2
Length = 1174

Score = 246 bits (627), Expect = 6e-65
Identities = 122/174 (70%), Positives = 142/174 (81%), Gaps = 2/174 (1%)
Frame = -3

Query: 517 YSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341
YSLATGNWG A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+
Sbjct: 446 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTL 505

Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161
WGM+CPAETPEG A GLVKNLALM+YI+VGS + +LE LEEW EN EEISPA I+ AT
Sbjct: 506 WGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADAT 565

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2
KIFVNGCWVG+H PE L+ LR+LR+++D EV ++RDI +E+R+YTD G
Sbjct: 566 KIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619


>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2
OS=Homo sapiens GN=POLR2B PE=1 SV=1
Length = 1174

Score = 246 bits (627), Expect = 6e-65
Identities = 122/174 (70%), Positives = 142/174 (81%), Gaps = 2/174 (1%)
Frame = -3

Query: 517 YSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341
YSLATGNWG A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+
Sbjct: 446 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTL 505

Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161
WGM+CPAETPEG A GLVKNLALM+YI+VGS + +LE LEEW EN EEISPA I+ AT
Sbjct: 506 WGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADAT 565

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2
KIFVNGCWVG+H PE L+ LR+LR+++D EV ++RDI +E+R+YTD G
Sbjct: 566 KIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619


>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2
OS=Schizosaccharomyces pombe GN=rpb2 PE=2 SV=2
Length = 1210

Score = 243 bits (619), Expect = 5e-64
Identities = 117/173 (67%), Positives = 137/173 (79%), Gaps = 1/173 (0%)
Frame = -3

Query: 517 YSLATGNWGQANTAGV-RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341
YSLATGNWG + V R GVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+H
Sbjct: 445 YSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTH 504

Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161
WGM+CPAETPEGQACGLVKNL+LMSY++VGS + ++E LEEWG E E+ +P+ AT
Sbjct: 505 WGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNAT 564

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
K+FVNG W+GVH P L LR LR+RLD S EV +VRDI KELRL+TD G
Sbjct: 565 KVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAG 617


>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2
OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2
Length = 1176

Score = 241 bits (615), Expect = 1e-63
Identities = 119/174 (68%), Positives = 142/174 (81%), Gaps = 2/174 (1%)
Frame = -3

Query: 517 YSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341
YSLATGNWG A RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+
Sbjct: 447 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 506

Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161
WGM+CPAETPEG A GLVKNLALM+YI+VGS + +LE LEEW EN EEI+P+ I+ AT
Sbjct: 507 WGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 566

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2
KIFVNGCWVG+H PE L+ LR+LR+++D EV ++RDI +E+R+YTD G
Sbjct: 567 KIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 620


>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2
OS=Caenorhabditis elegans GN=rbp-2 PE=2 SV=2
Length = 1193

Score = 239 bits (610), Expect = 6e-63
Identities = 118/174 (67%), Positives = 140/174 (80%), Gaps = 2/174 (1%)
Frame = -3

Query: 517 YSLATGNWGQANTAGV-RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341
YSLATGNWG A RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+
Sbjct: 452 YSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQ 511

Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161
WGM+CPAETPEGQA GLVKNLALM+YI+VGS +LE LEEW EN EE+SP+ I+ AT
Sbjct: 512 WGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADAT 571

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2
KIFVNG WVG+H +P+ L+ L++LR+++D EV +VRDI +E+R+YTD G
Sbjct: 572 KIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAG 625


>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2
OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3
Length = 1236

Score = 229 bits (584), Expect = 6e-60
Identities = 109/173 (63%), Positives = 135/173 (78%), Gaps = 1/173 (0%)
Frame = -3

Query: 517 YSLATGNWGQANTA-GVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341
YSLATGNWG+ A RAGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+H
Sbjct: 453 YSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTH 512

Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161
WG++CPAETPEGQACGLVKNL+LMS I+VG+ + +L LEEWG E E+ P+ +T
Sbjct: 513 WGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDST 572

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
++FVNG WVG H +P LV +R LR+R D SPEV ++RDI KE +++TD G
Sbjct: 573 RVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAG 625


>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2
OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1
Length = 1141

Score = 222 bits (566), Expect = 7e-58
Identities = 108/173 (62%), Positives = 136/173 (78%), Gaps = 1/173 (0%)
Frame = -3

Query: 517 YSLATGNWG-QANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341
Y+LATGNWG QA RAGV+QVLNR + STLSHLRR+N+PI +EGKLA PRQLHN+H
Sbjct: 418 YALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTH 477

Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161
WGM+CPAETPEGQACGLVKNL+LM+YI+VGS++ ++E LEE G E+ EEIS + + AT
Sbjct: 478 WGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAAT 537

Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
KIFVNG WVG+H P L++ L+ LR+ L+ EV +VRDI KE+R+ +D G
Sbjct: 538 KIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAG 590


tr_hit_id Q1L6D4
Definition tr|Q1L6D4|Q1L6D4_EMBCO RNA polymerase II second largest subunit (Fragment) OS=Embothrium coccineum
Align length 172
Score (bit) 306.0
E-value 4.0e-82
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917307|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_B05.
(519 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1L6D4|Q1L6D4_EMBCO RNA polymerase II second largest subunit ... 306 4e-82
tr|Q1L6D2|Q1L6D2_9MAGN DNA-directed RNA polymerase (Fragment) OS... 306 4e-82
tr|Q1L6B7|Q1L6B7_NELNU DNA-directed RNA polymerase (Fragment) OS... 306 4e-82
tr|A9SJE5|A9SJE5_PHYPA Predicted protein OS=Physcomitrella paten... 305 7e-82
tr|Q1L6A5|Q1L6A5_9MAGN DNA-directed RNA polymerase (Fragment) OS... 305 9e-82
tr|Q1L5Z6|Q1L5Z6_9MAGN DNA-directed RNA polymerase (Fragment) OS... 305 9e-82
tr|Q10G20|Q10G20_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 305 9e-82
tr|A3AKU7|A3AKU7_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 305 9e-82
tr|A2XK42|A2XK42_ORYSI DNA-directed RNA polymerase OS=Oryza sati... 305 9e-82
tr|Q1L5B1|Q1L5B1_LIRTU DNA-directed RNA polymerase (Fragment) OS... 305 1e-81
tr|Q1L5B0|Q1L5B0_PLAOI DNA-directed RNA polymerase (Fragment) OS... 305 1e-81
tr|Q1L6E1|Q1L6E1_9MAGN DNA-directed RNA polymerase (Fragment) OS... 304 2e-81
tr|Q1L6D7|Q1L6D7_9MAGN DNA-directed RNA polymerase (Fragment) OS... 304 2e-81
tr|Q1L6D6|Q1L6D6_9MAGN DNA-directed RNA polymerase (Fragment) OS... 304 2e-81
tr|Q1L6C4|Q1L6C4_9MAGN DNA-directed RNA polymerase (Fragment) OS... 304 2e-81
tr|Q1L6A4|Q1L6A4_9MAGN DNA-directed RNA polymerase (Fragment) OS... 304 2e-81
tr|A7PJ31|A7PJ31_VITVI DNA-directed RNA polymerase OS=Vitis vini... 304 2e-81
tr|A5C1N0|A5C1N0_VITVI DNA-directed RNA polymerase OS=Vitis vini... 304 2e-81
tr|Q1L5B2|Q1L5B2_ESCCA DNA-directed RNA polymerase (Fragment) OS... 303 4e-81
tr|Q1L6F0|Q1L6F0_9MAGN DNA-directed RNA polymerase (Fragment) OS... 302 6e-81
tr|Q1L5B5|Q1L5B5_RHOMC DNA-directed RNA polymerase OS=Rhododendr... 302 8e-81
tr|Q1L5A6|Q1L5A6_9ERIC RNA polymerase II second largest subunit ... 302 8e-81
tr|Q1L5Z4|Q1L5Z4_NICSY DNA-directed RNA polymerase OS=Nicotiana ... 301 1e-80
tr|Q1L5Z2|Q1L5Z2_PETHY DNA-directed RNA polymerase OS=Petunia hy... 301 1e-80
tr|Q1L5Z1|Q1L5Z1_SOLLC DNA-directed RNA polymerase OS=Solanum ly... 301 1e-80
tr|Q1L6E4|Q1L6E4_9MAGN DNA-directed RNA polymerase (Fragment) OS... 301 1e-80
tr|Q1L5B4|Q1L5B4_RHOMC DNA-directed RNA polymerase OS=Rhododendr... 301 2e-80
tr|Q1L6E0|Q1L6E0_9ROSI DNA-directed RNA polymerase (Fragment) OS... 300 2e-80
tr|Q1L5Z3|Q1L5Z3_ANTMA DNA-directed RNA polymerase OS=Antirrhinu... 300 4e-80
tr|Q1L5B3|Q1L5B3_9MAGN DNA-directed RNA polymerase (Fragment) OS... 300 4e-80

>tr|Q1L6D4|Q1L6D4_EMBCO RNA polymerase II second largest subunit
(Fragment) OS=Embothrium coccineum GN=RPB2 PE=3 SV=1
Length = 706

Score = 306 bits (784), Expect = 4e-82
Identities = 148/172 (86%), Positives = 158/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 346 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 405

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISPAVI QATK
Sbjct: 406 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATK 465

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 466 IFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q1L6D2|Q1L6D2_9MAGN DNA-directed RNA polymerase (Fragment)
OS=Euptelea polyandra GN=RPB2 PE=3 SV=1
Length = 874

Score = 306 bits (784), Expect = 4e-82
Identities = 148/172 (86%), Positives = 158/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 346 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 405

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISPAVI QATK
Sbjct: 406 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATK 465

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 466 IFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q1L6B7|Q1L6B7_NELNU DNA-directed RNA polymerase (Fragment)
OS=Nelumbo nucifera GN=RPB2 PE=3 SV=1
Length = 865

Score = 306 bits (784), Expect = 4e-82
Identities = 148/172 (86%), Positives = 158/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 338 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 397

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISPAVI QATK
Sbjct: 398 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATK 457

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 458 IFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 509


>tr|A9SJE5|A9SJE5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165263 PE=4 SV=1
Length = 1185

Score = 305 bits (782), Expect = 7e-82
Identities = 149/172 (86%), Positives = 159/172 (92%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 444 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 503

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM+YITVGSAAN +LE LEEW TEN EEISPAVI +TK
Sbjct: 504 GMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEFLEEWSTENFEEISPAVIPNSTK 563

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNG WVG+H PELLVR LR+LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 564 IFVNGLWVGIHRNPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYG 615


>tr|Q1L6A5|Q1L6A5_9MAGN DNA-directed RNA polymerase (Fragment)
OS=Tetracentron sinense GN=RPB2 PE=3 SV=1
Length = 951

Score = 305 bits (781), Expect = 9e-82
Identities = 147/172 (85%), Positives = 158/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 346 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 405

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISPAVI QATK
Sbjct: 406 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATK 465

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H P+LLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 466 IFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q1L5Z6|Q1L5Z6_9MAGN DNA-directed RNA polymerase (Fragment)
OS=Berberidopsis beckleri GN=RPB2 PE=3 SV=1
Length = 873

Score = 305 bits (781), Expect = 9e-82
Identities = 147/172 (85%), Positives = 158/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 346 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 405

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISPAVI QATK
Sbjct: 406 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATK 465

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H P+LLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 466 IFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 517


>tr|Q10G20|Q10G20_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=LOC_Os03g44484 PE=3 SV=1
Length = 1222

Score = 305 bits (781), Expect = 9e-82
Identities = 148/172 (86%), Positives = 157/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 484 YSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 543

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEWGTEN EEISPAVI QA K
Sbjct: 544 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAK 603

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H P+LLV+ LR LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 604 IFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYG 655


>tr|A3AKU7|A3AKU7_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=OsJ_011419 PE=3 SV=1
Length = 1135

Score = 305 bits (781), Expect = 9e-82
Identities = 148/172 (86%), Positives = 157/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 397 YSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 456

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEWGTEN EEISPAVI QA K
Sbjct: 457 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAK 516

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H P+LLV+ LR LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 517 IFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYG 568


>tr|A2XK42|A2XK42_ORYSI DNA-directed RNA polymerase OS=Oryza sativa
subsp. indica GN=OsI_12811 PE=3 SV=1
Length = 1222

Score = 305 bits (781), Expect = 9e-82
Identities = 148/172 (86%), Positives = 157/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 484 YSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 543

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEWGTEN EEISPAVI QA K
Sbjct: 544 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWGTENFEEISPAVIPQAAK 603

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H P+LLV+ LR LR+++D + EVGVVRDI LKELRLYTDYG
Sbjct: 604 IFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDIRLKELRLYTDYG 655


>tr|Q1L5B1|Q1L5B1_LIRTU DNA-directed RNA polymerase (Fragment)
OS=Liriodendron tulipifera GN=RPB2 PE=3 SV=1
Length = 942

Score = 305 bits (780), Expect = 1e-81
Identities = 147/172 (85%), Positives = 158/172 (91%)
Frame = -3

Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338
YSLATGNWGQAN AG RAGVSQVLNRLT+ASTLSHLRRLNSPIGREGKLAKPRQLHNSHW
Sbjct: 338 YSLATGNWGQANAAGTRAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 397

Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158
GM+CPAETPEGQACGLVKNLALM YITVGSAAN +LE LEEW TEN EEISPAVI QATK
Sbjct: 398 GMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATK 457

Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2
IFVNGCWVG+H PELLV+ LR+LR+++D + EVGV+RDI LKELRLYTDYG
Sbjct: 458 IFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYG 509