BP917307 |
Clone id |
YMU001_000099_B05 |
Library |
YMU01 |
Length |
535 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000099_B05. |
Accession |
BP917307 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4041Contig1 |
Sequence |
CGCGGCCTACAGCAACGCCCATAATCTGTATACAATCGTAGCTCCTTCAACATAATGTCT CTGACAACCCCAACTTCAGGACTGAAGTCCAGCCGTTGTCGCAACTCCCGTAGGATCCGC ACAAGAAGCTCAGGTTGGTGGTGAACTCCTACCCAGCATCCATTCACAAAGATCTTGGTT GCTTGGGAAATGACAGCAGGGGATATTTCCTCACAGTTTTCTGTGCCCCATTCCTCCAAA GACTCCAATACAAGATTTGCTGCTGACCCCACAGTTATGTATGACATAAGTGCCAAATTT TTTACGAGGCCACAGGCCTGTCCTTCTGGAGTTTCTGCAGGGCAAATCATTCCCCAATGT GAATTGTGTAGTTGGCGAGGCTTTGCCAATTTCCCTTCTCGACCAATTGGAGAATTTAGC CTCCGAAGATGCGACAAAGTAGACGCATAGGTTAGACGGTTCAACACCTGAGAAACACCT GCACGTACACCAGCTGTGTTTGCTTGGCCCCAGTTTCCAGTGGCTAACGAATACT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42877 |
Definition |
sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum |
Align length |
172 |
Score (bit) |
298.0 |
E-value |
1.0e-80 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917307|Adiantum capillus-veneris mRNA, clone: YMU001_000099_B05. (519 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2... 298 1e-80 sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2... 296 4e-80 sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2... 255 8e-68 sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2... 246 6e-65 sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2... 246 6e-65 sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2... 243 5e-64 sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2... 241 1e-63 sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2... 239 6e-63 sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2... 229 6e-60 sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2... 222 7e-58 sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2... 222 9e-58 sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2... 220 3e-57 sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2... 219 5e-57 sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Th... 124 2e-28 sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Th... 120 4e-27 sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC... 114 4e-25 sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC... 113 5e-25 sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Su... 106 6e-23 sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC... 105 2e-22 sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Ac... 104 3e-22 sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC... 104 3e-22 sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC... 103 5e-22 sp|P09844|RPOB2_METTW DNA-directed RNA polymerase subunit B'' OS... 98 3e-20 sp|O27123|RPOB2_METTH DNA-directed RNA polymerase subunit B'' OS... 98 3e-20 sp|P41558|RPOB2_METVS DNA-directed RNA polymerase subunit B'' OS... 96 1e-19 sp|Q58444|RPOB2_METJA DNA-directed RNA polymerase subunit B'' OS... 96 1e-19 sp|P15352|RPOB2_HALSA DNA-directed RNA polymerase subunit B'' OS... 87 4e-17 sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc... 74 3e-13 sp|Q85FM7|RPOB_ADICA DNA-directed RNA polymerase subunit beta OS... 59 2e-08 sp|Q3ZJ93|RPOB_PSEAK DNA-directed RNA polymerase subunit beta OS... 55 2e-07
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1 Length = 1191
Score = 298 bits (763), Expect = 1e-80 Identities = 146/172 (84%), Positives = 155/172 (90%) Frame = -3
Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338 YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS W Sbjct: 450 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 509
Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158 GM+CPAETPEGQACGLVKNLALM YITVGSAA +LE LEEWGTEN EEISPAVI QATK Sbjct: 510 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATK 569
Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2 IFVNG WVG+H P++LVR LR LR+R+D + EVGVVRDI LKELR+YTDYG Sbjct: 570 IFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 621
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2 Length = 1188
Score = 296 bits (758), Expect = 4e-80 Identities = 145/172 (84%), Positives = 155/172 (90%) Frame = -3
Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338 YSLATGNWGQAN AG RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNS W Sbjct: 451 YSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQW 510
Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQATK 158 GM+CPAETPEGQACGLVKNLALM YITVGSAA +LE LEEWGTEN EEISP+VI QATK Sbjct: 511 GMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATK 570
Query: 157 IFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2 IFVNG WVGVH P++LV+ LR LR+R+D + EVGVVRDI LKELR+YTDYG Sbjct: 571 IFVNGMWVGVHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYG 622
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1 Length = 1170
Score = 255 bits (652), Expect = 8e-68 Identities = 126/173 (72%), Positives = 146/173 (84%), Gaps = 1/173 (0%) Frame = -3
Query: 517 YSLATGNWGQANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHW 338 YSLATGNWG + + G ++GV+QVLNRLT+ASTLSHLRRLN+PIGREGKLAKPRQLHN+HW Sbjct: 444 YSLATGNWGSSKSGGTKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHW 503
Query: 337 GMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISP-AVISQAT 161 G++CP+ETPEGQACGLVKNLA+MSYI+VGSA+ +LE LEEW TEN EEIS + I AT Sbjct: 504 GIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFSAT 563
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2 KIFVNG WVG+HHQP+ L+ LR LR+ D S EV VVRDI KELRLYTD G Sbjct: 564 KIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSVVRDIREKELRLYTDPG 616
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2 Length = 1174
Score = 246 bits (627), Expect = 6e-65 Identities = 122/174 (70%), Positives = 142/174 (81%), Gaps = 2/174 (1%) Frame = -3
Query: 517 YSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341 YSLATGNWG A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ Sbjct: 446 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTL 505
Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161 WGM+CPAETPEG A GLVKNLALM+YI+VGS + +LE LEEW EN EEISPA I+ AT Sbjct: 506 WGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2 KIFVNGCWVG+H PE L+ LR+LR+++D EV ++RDI +E+R+YTD G Sbjct: 566 KIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1 Length = 1174
Score = 246 bits (627), Expect = 6e-65 Identities = 122/174 (70%), Positives = 142/174 (81%), Gaps = 2/174 (1%) Frame = -3
Query: 517 YSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341 YSLATGNWG A RAGVSQVLNRLT+ASTLSHLRRLNSPIGR+GKLAKPRQLHN+ Sbjct: 446 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTL 505
Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161 WGM+CPAETPEG A GLVKNLALM+YI+VGS + +LE LEEW EN EEISPA I+ AT Sbjct: 506 WGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADAT 565
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2 KIFVNGCWVG+H PE L+ LR+LR+++D EV ++RDI +E+R+YTD G Sbjct: 566 KIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAG 619
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe GN=rpb2 PE=2 SV=2 Length = 1210
Score = 243 bits (619), Expect = 5e-64 Identities = 117/173 (67%), Positives = 137/173 (79%), Gaps = 1/173 (0%) Frame = -3
Query: 517 YSLATGNWGQANTAGV-RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341 YSLATGNWG + V R GVSQVLNR T+ASTLSHLRR N+PIGR+GKLAKPRQLHN+H Sbjct: 445 YSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTH 504
Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161 WGM+CPAETPEGQACGLVKNL+LMSY++VGS + ++E LEEWG E E+ +P+ AT Sbjct: 505 WGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNAT 564
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2 K+FVNG W+GVH P L LR LR+RLD S EV +VRDI KELRL+TD G Sbjct: 565 KVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAG 617
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2 Length = 1176
Score = 241 bits (615), Expect = 1e-63 Identities = 119/174 (68%), Positives = 142/174 (81%), Gaps = 2/174 (1%) Frame = -3
Query: 517 YSLATGNWGQANTAG-VRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341 YSLATGNWG A RAGVSQVLNRLT+ASTLSHLRR+NSPIGR+GKLAKPRQLHN+ Sbjct: 447 YSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTL 506
Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161 WGM+CPAETPEG A GLVKNLALM+YI+VGS + +LE LEEW EN EEI+P+ I+ AT Sbjct: 507 WGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 566
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2 KIFVNGCWVG+H PE L+ LR+LR+++D EV ++RDI +E+R+YTD G Sbjct: 567 KIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAG 620
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rbp-2 PE=2 SV=2 Length = 1193
Score = 239 bits (610), Expect = 6e-63 Identities = 118/174 (67%), Positives = 140/174 (80%), Gaps = 2/174 (1%) Frame = -3
Query: 517 YSLATGNWGQANTAGV-RAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341 YSLATGNWG A RAGVSQVLNRLTY +TLSHLRR NSPIGREGKLAKPRQLHN+ Sbjct: 452 YSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQ 511
Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161 WGM+CPAETPEGQA GLVKNLALM+YI+VGS +LE LEEW EN EE+SP+ I+ AT Sbjct: 512 WGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADAT 571
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLD-FSPEVGVVRDIMLKELRLYTDYG 2 KIFVNG WVG+H +P+ L+ L++LR+++D EV +VRDI +E+R+YTD G Sbjct: 572 KIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAG 625
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3 Length = 1236
Score = 229 bits (584), Expect = 6e-60 Identities = 109/173 (63%), Positives = 135/173 (78%), Gaps = 1/173 (0%) Frame = -3
Query: 517 YSLATGNWGQANTA-GVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341 YSLATGNWG+ A RAGVSQVLNR TY+STLSHLRR N+PIGR+GK+AKPRQLHN+H Sbjct: 453 YSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTH 512
Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161 WG++CPAETPEGQACGLVKNL+LMS I+VG+ + +L LEEWG E E+ P+ +T Sbjct: 513 WGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDST 572
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2 ++FVNG WVG H +P LV +R LR+R D SPEV ++RDI KE +++TD G Sbjct: 573 RVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAG 625
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1 Length = 1141
Score = 222 bits (566), Expect = 7e-58 Identities = 108/173 (62%), Positives = 136/173 (78%), Gaps = 1/173 (0%) Frame = -3
Query: 517 YSLATGNWG-QANTAGVRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSH 341 Y+LATGNWG QA RAGV+QVLNR + STLSHLRR+N+PI +EGKLA PRQLHN+H Sbjct: 418 YALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTH 477
Query: 340 WGMICPAETPEGQACGLVKNLALMSYITVGSAANLVLESLEEWGTENCEEISPAVISQAT 161 WGM+CPAETPEGQACGLVKNL+LM+YI+VGS++ ++E LEE G E+ EEIS + + AT Sbjct: 478 WGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAAT 537
Query: 160 KIFVNGCWVGVHHQPELLVRILRELRQRLDFSPEVGVVRDIMLKELRLYTDYG 2 KIFVNG WVG+H P L++ L+ LR+ L+ EV +VRDI KE+R+ +D G Sbjct: 538 KIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDIREKEIRVQSDAG 590
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q1L6D4 |
Definition |
tr|Q1L6D4|Q1L6D4_EMBCO RNA polymerase II second largest subunit (Fragment) OS=Embothrium coccineum |
Align length |
172 |
Score (bit) |
306.0 |
E-value |
4.0e-82 |
Report |
|