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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917308
Clone id YMU001_000099_B06
Library
Length 324
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_B06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTGGGCGAGCAGCAAGTAGACACTGGCAGGCTGCAATGGGTTGAGAGCAACTTCATGGTG
TACAACTATTGTACAGATCAAGCCCGTTATCCCATCGTTCCTCTCGAATGCTGATCCTAC
CCCTTCTGGTTCAGCTCTACAATTAACACATTTTTTAATGAGAGACGTCCCACCACTTCT
AGTCCAGCTATACAACTAACACATTCTTCTTAACGAGAGATGCCCTACACTCATGAGAGG
GCTCTCCCACCTATATCTCATAAGCACCCTCCCCTTAGACTAATAGTTTAGCTAGAGGGT
TGCATCCTTGCATATTTCTCCTCG
■■Homology search results ■■ -
sp_hit_id Q40144
Definition sp|Q40144|XTH1_SOLLC Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum
Align length 28
Score (bit) 48.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917308|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_B06.
         (309 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40144|XTH1_SOLLC Probable xyloglucan endotransglucosylase/hy...    49   1e-05
sp|Q8LNZ5|XTHB_PHAAN Probable xyloglucan endotransglucosylase/hy...    47   4e-05
sp|P93349|XTH_TOBAC Probable xyloglucan endotransglucosylase/hyd...    46   7e-05
sp|Q6YDN9|XTH_BRAOB Xyloglucan endotransglucosylase/hydrolase OS...    46   7e-05
sp|Q8LF99|XTH6_ARATH Probable xyloglucan endotransglucosylase/hy...    46   7e-05
sp|Q39099|XTH4_ARATH Xyloglucan endotransglucosylase/hydrolase p...    46   7e-05
sp|Q9XIW1|XTH5_ARATH Probable xyloglucan endotransglucosylase/hy...    45   1e-04
sp|P24806|XTH24_ARATH Xyloglucan endotransglucosylase/hydrolase ...    44   3e-04
sp|Q8LDW9|XTH9_ARATH Xyloglucan endotransglucosylase/hydrolase p...    44   3e-04
sp|Q8LER3|XTH7_ARATH Probable xyloglucan endotransglucosylase/hy...    44   3e-04
sp|Q38857|XTH22_ARATH Xyloglucan endotransglucosylase/hydrolase ...    43   6e-04
sp|Q9FKL9|XTH12_ARATH Probable xyloglucan endotransglucosylase/h...    42   7e-04
sp|Q38910|XTH23_ARATH Probable xyloglucan endotransglucosylase/h...    42   0.001
sp|Q9ZSU4|XTH14_ARATH Xyloglucan endotransglucosylase/hydrolase ...    42   0.001
sp|Q41638|XTHA_PHAAN Xyloglucan endotransglucosylase/hydrolase p...    42   0.001
sp|Q9FKL8|XTH13_ARATH Putative xyloglucan endotransglucosylase/h...    42   0.001
sp|Q39857|XTH_SOYBN Probable xyloglucan endotransglucosylase/hyd...    41   0.002
sp|P35694|BRU1_SOYBN Brassinosteroid-regulated protein BRU1 OS=G...    40   0.003
sp|O80803|XTH17_ARATH Probable xyloglucan endotransglucosylase/h...    40   0.005
sp|Q8L9A9|XTH8_ARATH Probable xyloglucan endotransglucosylase/hy...    39   0.008
sp|Q9FI31|XTH20_ARATH Xyloglucan endotransglucosylase/hydrolase ...    39   0.008
sp|Q9M0D2|XTH18_ARATH Probable xyloglucan endotransglucosylase/h...    39   0.008
sp|Q38911|XTH15_ARATH Probable xyloglucan endotransglucosylase/h...    39   0.008
sp|Q9M0D1|XTH19_ARATH Probable xyloglucan endotransglucosylase/h...    38   0.018
sp|Q9ZV40|XTH21_ARATH Probable xyloglucan endotransglucosylase/h...    37   0.023
sp|Q8LG58|XTH16_ARATH Probable xyloglucan endotransglucosylase/h...    37   0.031
sp|Q41542|XTH_WHEAT Probable xyloglucan endotransglucosylase/hyd...    37   0.040
sp|Q9SV60|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase p...    37   0.040
sp|Q76BW5|XTH8_ORYSJ Xyloglucan endotransglycosylase/hydrolase p...    36   0.052
sp|Q8LC45|XTH33_ARATH Probable xyloglucan endotransglucosylase/h...    36   0.052

>sp|Q40144|XTH1_SOLLC Probable xyloglucan
           endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum
           GN=XTH1 PE=2 SV=1
          Length = 296

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 18/28 (64%), Positives = 22/28 (78%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   + VYNYCTD+ARYP+ P EC
Sbjct: 263 RLRWVRQKYTVYNYCTDKARYPVPPPEC 290


>sp|Q8LNZ5|XTHB_PHAAN Probable xyloglucan
           endotransglucosylase/hydrolase protein B OS=Phaseolus
           angularis GN=XTHB PE=2 SV=1
          Length = 293

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   F +YNYCTD+ RYP +P EC
Sbjct: 260 RLKWVRQKFTIYNYCTDRTRYPQLPPEC 287


>sp|P93349|XTH_TOBAC Probable xyloglucan
           endotransglucosylase/hydrolase protein OS=Nicotiana
           tabacum GN=XTH PE=2 SV=1
          Length = 295

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   + +YNYCTD+ RYP +P EC
Sbjct: 262 RLRWVRQKYTIYNYCTDRKRYPTLPPEC 289


>sp|Q6YDN9|XTH_BRAOB Xyloglucan endotransglucosylase/hydrolase
           OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1
          Length = 295

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   + +YNYCTD+ R+P++P EC
Sbjct: 262 RLKWVRMKWTIYNYCTDRTRFPVMPAEC 289


>sp|Q8LF99|XTH6_ARATH Probable xyloglucan
           endotransglucosylase/hydrolase protein 6 OS=Arabidopsis
           thaliana GN=XTH6 PE=2 SV=2
          Length = 292

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = +1

Query: 1   VDTGRLQWVESNFMVYNYCTDQARYPIVPLEC 96
           V+  R +WV  N MVY+YCTD++R+P+ P EC
Sbjct: 259 VEARRYRWVRVNHMVYDYCTDRSRFPVPPPEC 290


>sp|Q39099|XTH4_ARATH Xyloglucan endotransglucosylase/hydrolase
           protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1
          Length = 296

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 15/28 (53%), Positives = 22/28 (78%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   + +YNYCTD+ R+P++P EC
Sbjct: 263 RLKWVRMKWTIYNYCTDRTRFPVMPAEC 290


>sp|Q9XIW1|XTH5_ARATH Probable xyloglucan
           endotransglucosylase/hydrolase protein 5 OS=Arabidopsis
           thaliana GN=XTH5 PE=2 SV=1
          Length = 293

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   + +YNYCTD+ R+P+ P EC
Sbjct: 260 RLKWVRKRYTIYNYCTDRVRFPVPPPEC 287


>sp|P24806|XTH24_ARATH Xyloglucan endotransglucosylase/hydrolase
           protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2
          Length = 269

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPI-VPLEC 96
           RL+WV+ N+M+YNYCTD  R+P   P EC
Sbjct: 237 RLKWVQKNYMIYNYCTDHRRFPQGAPKEC 265


>sp|Q8LDW9|XTH9_ARATH Xyloglucan endotransglucosylase/hydrolase
           protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2
          Length = 290

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           +L WV +N M+Y+YC D  R+P+ PLEC
Sbjct: 257 QLIWVRANHMIYDYCFDATRFPVTPLEC 284


>sp|Q8LER3|XTH7_ARATH Probable xyloglucan
           endotransglucosylase/hydrolase protein 7 OS=Arabidopsis
           thaliana GN=XTH7 PE=2 SV=2
          Length = 293

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +1

Query: 1   VDTGRLQWVESNFMVYNYCTDQARYPIVPLEC 96
           V+    +WV  N MVY+YCTD++R+P+ P EC
Sbjct: 258 VEARSYRWVRVNHMVYDYCTDKSRFPVPPPEC 289
tr_hit_id A9TAP3
Definition tr|A9TAP3|A9TAP3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 29
Score (bit) 52.0
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917308|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_B06.
         (309 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TAP3|A9TAP3_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|A9RSS7|A9RSS7_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|B8XXI4|B8XXI4_ANNCH Xyloglucan endotransglycosylase OS=Annona...    48   2e-04
tr|Q38696|Q38696_ACTDE Xyloglucan endotransglycosylase OS=Actini...    48   3e-04
tr|Q2VA35|Q2VA35_9ROSA Xyloglucan endotransglucosylase hydrolase...    48   3e-04
tr|A9T5F5|A9T5F5_PHYPA Predicted protein OS=Physcomitrella paten...    48   3e-04
tr|A5AQ11|A5AQ11_VITVI Putative uncharacterized protein OS=Vitis...    48   3e-04
tr|Q4F986|Q4F986_SOLLC Xyloglucan endotransglycosylase/hydrolase...    47   4e-04
tr|B1A9R7|B1A9R7_PYRPY XET OS=Pyrus pyrifolia PE=2 SV=1                47   4e-04
tr|A9P7Z3|A9P7Z3_POPTR Putative uncharacterized protein OS=Popul...    47   4e-04
tr|A1YZ21|A1YZ21_9ROSI Xyloglucan endotransglycosylase OS=Populu...    47   4e-04
tr|Q8GTJ1|Q8GTJ1_MALDO Xyloglucan endotransglycosylase OS=Malus ...    47   5e-04
tr|Q6R5L6|Q6R5L6_CAPAN Sadtomato protein (Fragment) OS=Capsicum ...    47   5e-04
tr|B7SCZ6|B7SCZ6_GOSAR Xyloglucan endotransglycosylase/hydrolase...    47   5e-04
tr|B2KL35|B2KL35_GOSHI Xyloglucan endotransglycosylase OS=Gossyp...    47   5e-04
tr|Q5MB21|Q5MB21_9FABA Xyloglucan endotransglucosylase/hydrolase...    47   6e-04
tr|A5BHG3|A5BHG3_VITVI Putative uncharacterized protein (Chromos...    46   8e-04
tr|Q8GZD5|Q8GZD5_9ROSI Xyloglucan endotransglycosylase OS=Populu...    46   0.001
tr|Q0WUU2|Q0WUU2_ARATH Xyloglucan endotransglycosylase-like prot...    46   0.001
tr|Q06BI6|Q06BI6_CUCME Xyloglucan endotransglucosylase/hydrolase...    46   0.001
tr|O80431|O80431_TOBAC Endo-xyloglucan transferase (EXGT) OS=Nic...    46   0.001
tr|A9P820|A9P820_POPTR Putative uncharacterized protein OS=Popul...    46   0.001
tr|A0MA75|A0MA75_GERHY Xyloglucan endotransglucosylase OS=Gerber...    46   0.001
tr|O23950|O23950_GOSHI Endo-xyloglucan transferase (Fragment) OS...    45   0.001
tr|B7SCZ7|B7SCZ7_GOSRA Xyloglucan endotransglycosylase/hydrolase...    45   0.001
tr|B2KL34|B2KL34_GOSHI Xyloglucan endotransglycosylase OS=Gossyp...    45   0.001
tr|B2KL33|B2KL33_GOSHI Xyloglucan endotransglycosylase OS=Gossyp...    45   0.001
tr|B0M176|B0M176_PEA Xyloglucan endotransglucosylase (Fragment) ...    45   0.001
tr|A9PC40|A9PC40_POPTR Putative uncharacterized protein OS=Popul...    45   0.001
tr|A7QTB5|A7QTB5_VITVI Chromosome chr1 scaffold_166, whole genom...    45   0.001

>tr|A9TAP3|A9TAP3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168968 PE=4 SV=1
          Length = 279

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +1

Query: 10  GRLQWVESNFMVYNYCTDQARYPIVPLEC 96
           G++QWV  NFMVY+YCTD+ R+P+ P EC
Sbjct: 246 GQMQWVNHNFMVYDYCTDKERFPVAPFEC 274


>tr|A9RSS7|A9RSS7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_70081 PE=4 SV=1
          Length = 262

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +1

Query: 4   DTGRLQWVESNFMVYNYCTDQARYPIVPLEC 96
           D  RL WV+ N++VYNYCTD+ R PI P+EC
Sbjct: 227 DVERLNWVKENYVVYNYCTDRGRNPIRPIEC 257


>tr|B8XXI4|B8XXI4_ANNCH Xyloglucan endotransglycosylase OS=Annona
           cherimola GN=XET2 PE=2 SV=1
          Length = 293

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RLQWV   + +YNYCTD++RYP +P EC
Sbjct: 260 RLQWVRQKYTIYNYCTDRSRYPTMPPEC 287


>tr|Q38696|Q38696_ACTDE Xyloglucan endotransglycosylase OS=Actinidia
           deliciosa GN=XET PE=2 SV=1
          Length = 293

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV S + +YNYCTD+ RYP +P EC
Sbjct: 260 RLRWVRSKYTIYNYCTDRTRYPTMPPEC 287


>tr|Q2VA35|Q2VA35_9ROSA Xyloglucan endotransglucosylase hydrolase
           OS=Rosa x borboniana PE=2 SV=1
          Length = 294

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   F +YNYCTD+ RYP +P EC
Sbjct: 261 RLRWVRQRFTIYNYCTDRTRYPSLPAEC 288


>tr|A9T5F5|A9T5F5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191788 PE=4 SV=1
          Length = 313

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           +L+WVE N+MVYNYCTD  R P  P EC
Sbjct: 272 KLRWVEENYMVYNYCTDVKRNPTTPFEC 299


>tr|A5AQ11|A5AQ11_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037683 PE=4 SV=1
          Length = 288

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = +1

Query: 1   VDTGRLQWVESNFMVYNYCTDQARYPIVPLEC 96
           ++  R  WV  N M+Y+YCTD++RYP+ P EC
Sbjct: 253 IEARRYHWVRQNHMIYDYCTDKSRYPVTPPEC 284


>tr|Q4F986|Q4F986_SOLLC Xyloglucan endotransglycosylase/hydrolase 16
           protein (Fragment) OS=Solanum lycopersicum GN=XTH16 PE=2
           SV=1
          Length = 266

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 17/28 (60%), Positives = 23/28 (82%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           +L WV +N MVY+YCTD AR+P+ P+EC
Sbjct: 229 QLIWVRANHMVYDYCTDSARFPVAPVEC 256


>tr|B1A9R7|B1A9R7_PYRPY XET OS=Pyrus pyrifolia PE=2 SV=1
          Length = 294

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           RL+WV   F +YNYCTD+ RYP +P EC
Sbjct: 261 RLRWVRRKFTIYNYCTDRVRYPFMPPEC 288


>tr|A9P7Z3|A9P7Z3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 296

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +1

Query: 13  RLQWVESNFMVYNYCTDQARYPIVPLEC 96
           +L WV++N MVY+YC+D AR+P+ PLEC
Sbjct: 261 QLLWVKANHMVYDYCSDTARFPVTPLEC 288