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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917325
Clone id YMU001_000099_D06
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCCCTTTCTTGCTCTGCCTGTGTCTCTAACAGCCTTGATCTGAGCTCCCGAGCTTCCAT
TGACAAAACGGATCTTTCACCATAAACCTCCGCAGCACGCAAGTCATATGCGGCCCTTTC
GCGCAGCATCTGCTTCCGCATATCCGCCACCTTCAAAAGAATGTCTGCACCCCCACGTGT
GGCCTCAGCTTTAGCCTGTTGGGCAGCTGACTCTTCTTGCTCTGTCTGCTGCCTTAAAAG
GTAAGTATCTTCCATGCCTTTCCTCACATTCTCTTTTTGGCATTTAGCTTCAGCAACCAA
CTTATCCAAGTCTTCAGTGTCAATAATGTATCGAGAAGTCTCGAGTAAACCCTCCTGGAT
TGCACAATCTCTTCTCGTATTGACACTTAAGCAGAGGGAAAGCTTCCTATCATCATCATT
GGCATGACCTTTTGACAATTGTGTATGCCTCCTAACGGGACCTCCTTGCTCTGACATGTT
T
■■Homology search results ■■ -
sp_hit_id Q54MQ7
Definition sp|Q54MQ7|DHYS_DICDI Probable deoxyhypusine synthase OS=Dictyostelium discoideum
Align length 67
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917325|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_D06.
         (481 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54MQ7|DHYS_DICDI Probable deoxyhypusine synthase OS=Dictyost...    32   1.5  
sp|Q6FRN2|DHYS_CANGA Deoxyhypusine synthase OS=Candida glabrata ...    32   1.5  
sp|A8AWX1|MIAA_STRGC tRNA delta(2)-isopentenylpyrophosphate tran...    30   4.4  
sp|Q8TFF3|HAC1_TRIRE Transcriptional activator hac1 OS=Trichoder...    30   5.7  
sp|Q5R613|SNX6_PONAB Sorting nexin-6 OS=Pongo abelii GN=SNX6 PE=...    30   7.5  
sp|Q6P8X1|SNX6_MOUSE Sorting nexin-6 OS=Mus musculus GN=Snx6 PE=...    30   7.5  
sp|Q9UNH7|SNX6_HUMAN Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=...    30   7.5  
sp|Q87ZE0|RGMG_PSESM Putative ribose/galactose/methyl galactosid...    29   9.8  
sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo sap...    29   9.8  

>sp|Q54MQ7|DHYS_DICDI Probable deoxyhypusine synthase
           OS=Dictyostelium discoideum GN=dhps PE=3 SV=1
          Length = 376

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -2

Query: 438 LSKGHANDDDRKLSLCLSVNTRRDCAIQEGLLETSRYIIDTEDLDKLVAEAKCQKENVRK 259
           L +G  +D++RK++ C          +  G+ E  RY++    +D +V+ A   +E+  K
Sbjct: 82  LKEGEDDDEERKVTRCKIFLGYTSNLVSSGVREIIRYLVQHSMVDVIVSTAGGVEEDFIK 141

Query: 258 GMEDTYL 238
            +  TY+
Sbjct: 142 CLAPTYM 148


>sp|Q6FRN2|DHYS_CANGA Deoxyhypusine synthase OS=Candida glabrata
           GN=DYS1 PE=3 SV=1
          Length = 385

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 360 IQEGLLETSRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYL 238
           I  GL ET RY++  + +D LVA A   +E++ K +  TYL
Sbjct: 111 ISSGLRETLRYLVQHKMVDALVATAGGIEEDIIKCLAPTYL 151


>sp|A8AWX1|MIAA_STRGC tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Streptococcus gordonii (strain Challis /
           ATCC 35105 / CH1 / DL1 / V288) GN=miaA PE=3 SV=1
          Length = 294

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 414 DDRKLSLCLSVNTRRDCAIQEGLLETSRYIID 319
           DD++  L   +N R D  I++GLLE +R++ D
Sbjct: 185 DDKREKLYERINQRVDLMIEDGLLEEARWLFD 216


>sp|Q8TFF3|HAC1_TRIRE Transcriptional activator hac1 OS=Trichoderma
           reesei GN=hac1 PE=2 SV=1
          Length = 451

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -2

Query: 153 KVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLET 22
           K  D ++Q   ER   + RAA+   ER  L +EA E R++ LET
Sbjct: 112 KTEDEKEQRRVERVLRNRRAAQSSRERKRLEVEALEKRNKELET 155


>sp|Q5R613|SNX6_PONAB Sorting nexin-6 OS=Pongo abelii GN=SNX6 PE=2
           SV=1
          Length = 406

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 417 DDDRKLSLCLSVNTRRDCAIQEGLLETSRYIIDTEDLDKLVAEAKCQKENV 265
           D+D KLS  L    R   A ++ L   SR ++D E+ +K + +A+ + ++V
Sbjct: 287 DEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDV 337


>sp|Q6P8X1|SNX6_MOUSE Sorting nexin-6 OS=Mus musculus GN=Snx6 PE=2
           SV=1
          Length = 406

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 417 DDDRKLSLCLSVNTRRDCAIQEGLLETSRYIIDTEDLDKLVAEAKCQKENV 265
           D+D KLS  L    R   A ++ L   SR ++D E+ +K + +A+ + ++V
Sbjct: 287 DEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDV 337


>sp|Q9UNH7|SNX6_HUMAN Sorting nexin-6 OS=Homo sapiens GN=SNX6 PE=1
           SV=1
          Length = 406

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 417 DDDRKLSLCLSVNTRRDCAIQEGLLETSRYIIDTEDLDKLVAEAKCQKENV 265
           D+D KLS  L    R   A ++ L   SR ++D E+ +K + +A+ + ++V
Sbjct: 287 DEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDV 337


>sp|Q87ZE0|RGMG_PSESM Putative ribose/galactose/methyl galactoside
           import ATP-binding protein OS=Pseudomonas syringae pv.
           tomato GN=PSPTO_3489 PE=3 SV=1
          Length = 525

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 165 DILLKVADMRKQMLRERAAYDLRAAEVYG 79
           D+LL V+D+  + + ++ ++DLRA EV G
Sbjct: 283 DVLLSVSDLSLKGIFQQVSFDLRAGEVLG 311


>sp|Q7Z401|MYCPP_HUMAN C-myc promoter-binding protein OS=Homo
           sapiens GN=DENND4A PE=1 SV=2
          Length = 1863

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 23/101 (22%), Positives = 40/101 (39%)
 Frame = +2

Query: 179 VASALACWAADSSCSVCCLKR*VSSMPFLTFSFWHLASATNLSKSSVSIMYREVSSKPSW 358
           + + + CW ++S              P   FS + L  A+       +I + E  S+ + 
Sbjct: 237 MGATIECWPSNSK------------YPLPVFSTFVLTGASAEKVYGAAIQFYEPYSEENL 284

Query: 359 IAQSLLVLTLKQRESFLSSSLA*PFDNCVCLLTGPPCSDMF 481
             +  L+L L   +    SS     + C+CLL+  P  D F
Sbjct: 285 TEKQRLLLGLTSADGKSDSSKTIHTNKCICLLSHWPFFDAF 325
tr_hit_id B8LLN7
Definition tr|B8LLN7|B8LLN7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 113
Score (bit) 80.5
E-value 4.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917325|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_D06.
         (481 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LLN7|B8LLN7_PICSI Putative uncharacterized protein OS=Picea...    80   4e-14
tr|A9TLI4|A9TLI4_PHYPA Predicted protein OS=Physcomitrella paten...    70   5e-11
tr|Q9ZVT0|Q9ZVT0_ARATH F15K9.11 protein OS=Arabidopsis thaliana ...    67   6e-10
tr|A7PU77|A7PU77_VITVI Chromosome chr7 scaffold_31, whole genome...    63   6e-09
tr|Q9SY13|Q9SY13_ARATH Putative uncharacterized protein T5J8.20 ...    55   2e-06
tr|Q8VY14|Q8VY14_ARATH Putative uncharacterized protein At4g0288...    55   2e-06
tr|Q94I19|Q94I19_ORYSA Putative uncharacterized protein OSJNBa00...    54   4e-06
tr|Q7XG35|Q7XG35_ORYSJ Os10g0315400 protein OS=Oryza sativa subs...    54   4e-06
tr|B8Q8B4|B8Q8B4_ORYSI SKIP interacting protein 28 (Fragment) OS...    54   4e-06
tr|A2Z5V9|A2Z5V9_ORYSI Putative uncharacterized protein OS=Oryza...    54   4e-06
tr|A9RUL4|A9RUL4_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|Q012W5|Q012W5_OSTTA Chromosome 08 contig 1, DNA sequence. (Fr...    35   1.8  
tr|Q47UH5|Q47UH5_COLP3 Substrate-binding transcriptional regulat...    34   3.1  
tr|A8GLP4|A8GLP4_SERP5 Putative uncharacterized protein OS=Serra...    34   3.1  
tr|B6K8J5|B6K8J5_TOXGO Putative uncharacterized protein OS=Toxop...    34   3.1  
tr|A1TKS1|A1TKS1_ACIAC Asparagine synthase (Glutamine-hydrolyzin...    34   4.1  
tr|Q6A0E9|Q6A0E9_MOUSE MKIAA0004 protein (Fragment) OS=Mus muscu...    33   9.2  
tr|A3SCU8|A3SCU8_9RHOB Putative uncharacterized protein OS=Sulfi...    33   9.2  
tr|B8BHR2|B8BHR2_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.2  

>tr|B8LLN7|B8LLN7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 762

 Score = 80.5 bits (197), Expect = 4e-14
 Identities = 44/113 (38%), Positives = 66/113 (58%)
 Frame = -2

Query: 339 TSRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADI 160
           +S  I+  + ++  V+EAK +KE + + ME    LR                A +GG DI
Sbjct: 374 SSSQIVSVDTVEGFVSEAKKEKEMLMEAMELIRFLRAEADREEVAAQRAKEEAAKGGVDI 433

Query: 159 LLKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQERA 1
           L KV ++RK + R +   D+ A EVYGER++L+ EARELRSRL +  A+++RA
Sbjct: 434 LSKVVELRKMLSRAKETNDMHAGEVYGERAILATEARELRSRLAQLSADKDRA 486


>tr|A9TLI4|A9TLI4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170752 PE=4 SV=1
          Length = 841

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 40/112 (35%), Positives = 62/112 (55%)
 Frame = -2

Query: 336 SRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADIL 157
           S  ++  + LD+LV  AK  KE +   +ED   +R                A  GG D+L
Sbjct: 485 SSQLLGVDALDELVNGAKADKEALVAAIEDMRAMRSAVEHAEASAQQAKKDAMNGGLDLL 544

Query: 156 LKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQERA 1
            KV +M+  ++R R A ++ A EVYGE++VL  E++EL+ RL + + E+ERA
Sbjct: 545 AKVEEMQVMLVRAREANEMHAGEVYGEKAVLGTESQELQRRLAQLKEEKERA 596


>tr|Q9ZVT0|Q9ZVT0_ARATH F15K9.11 protein OS=Arabidopsis thaliana
           GN=At1g03290 PE=4 SV=1
          Length = 571

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 35/113 (30%), Positives = 59/113 (52%)
 Frame = -2

Query: 339 TSRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADI 160
           TS ++   + L+ ++ +AK  K+N+   ME    +                 A RGG D 
Sbjct: 278 TSTHVCSVDQLEDIIEDAKSNKKNLLTEMETVTNIMREVELKEKDAEKSKEEAARGGLDT 337

Query: 159 LLKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQERA 1
           L KV +++K +   + A D+ A EVYGE+S+L+ E +EL +RLL    E+ ++
Sbjct: 338 LQKVEELKKMLEHAKEANDMHAGEVYGEKSILATEVKELENRLLNLSEERNKS 390


>tr|A7PU77|A7PU77_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023687001
           PE=4 SV=1
          Length = 413

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 33/116 (28%), Positives = 64/116 (55%)
 Frame = -2

Query: 348 LLETSRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGG 169
           ++  S +I  T+ L++++ +AK  K+ +   M+    +                 A RGG
Sbjct: 110 IVTQSGHICSTDFLEEMIEDAKNNKKTLFSSMDSVMNIMREVELQEKAAQQAREEAARGG 169

Query: 168 ADILLKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQERA 1
            +IL +V ++++ +   + A  + A EVYGE+++L+ EAREL+SRLL    E++++
Sbjct: 170 LEILTRVEELKEMLQHAKEANGMHAGEVYGEKAILATEARELQSRLLSLSDERDKS 225


>tr|Q9SY13|Q9SY13_ARATH Putative uncharacterized protein T5J8.20
           (Putative uncharacterized protein AT4g02880)
           OS=Arabidopsis thaliana GN=T5J8.20 PE=4 SV=1
          Length = 539

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 32/103 (31%), Positives = 52/103 (50%)
 Frame = -2

Query: 309 LDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADILLKVADMRKQ 130
           L++++ +AK  K  +   ME    L                 A+ GG D L KV +++K 
Sbjct: 263 LEQIIEDAKSNKRTLFTVMESIMNLMREVELQEKEAEKAKEDASIGGFDTLDKVEELKKM 322

Query: 129 MLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQERA 1
           +   + A D+ A EVYGERS+L+ E  EL +RL+    E++ +
Sbjct: 323 LEHAKEANDMAAGEVYGERSILTTEVNELENRLISLSEERDNS 365


>tr|Q8VY14|Q8VY14_ARATH Putative uncharacterized protein At4g02880
           OS=Arabidopsis thaliana GN=At4g02880 PE=2 SV=1
          Length = 552

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 32/103 (31%), Positives = 52/103 (50%)
 Frame = -2

Query: 309 LDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADILLKVADMRKQ 130
           L++++ +AK  K  +   ME    L                 A+ GG D L KV +++K 
Sbjct: 276 LEQIIEDAKSNKRTLFTVMESIMNLMREVELQEKEAEKAKEDASIGGFDTLDKVEELKKM 335

Query: 129 MLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQERA 1
           +   + A D+ A EVYGERS+L+ E  EL +RL+    E++ +
Sbjct: 336 LEHAKEANDMAAGEVYGERSILTTEVNELENRLISLSEERDNS 378


>tr|Q94I19|Q94I19_ORYSA Putative uncharacterized protein
           OSJNBa0034E23.6 OS=Oryza sativa GN=OSJNBa0034E23.6 PE=4
           SV=1
          Length = 589

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 31/110 (28%), Positives = 55/110 (50%)
 Frame = -2

Query: 336 SRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADIL 157
           S + +  E LD  +++AK  K ++   +E    +                 ++  G  IL
Sbjct: 286 STHSVSIESLDDSISDAKSNKNDLLPSLELVSKMIQDVEVLEEKAEVAKHESSIAGTSIL 345

Query: 156 LKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQE 7
            KV  +++ +   + A D+ A EV+GE+S+L+ EAREL+SRL     E++
Sbjct: 346 TKVGKLKEMLNHAKEANDMHACEVFGEKSILTTEARELQSRLQRLSDERK 395


>tr|Q7XG35|Q7XG35_ORYSJ Os10g0315400 protein OS=Oryza sativa subsp.
           japonica GN=Os10g0315400 PE=4 SV=1
          Length = 589

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 31/110 (28%), Positives = 55/110 (50%)
 Frame = -2

Query: 336 SRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADIL 157
           S + +  E LD  +++AK  K ++   +E    +                 ++  G  IL
Sbjct: 286 STHSVSIESLDDSISDAKSNKNDLLPSLELVSKMIQDVEVLEEKAEVAKHESSIAGTSIL 345

Query: 156 LKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQE 7
            KV  +++ +   + A D+ A EV+GE+S+L+ EAREL+SRL     E++
Sbjct: 346 TKVGKLKEMLNHAKEANDMHACEVFGEKSILTTEARELQSRLQRLSDERK 395


>tr|B8Q8B4|B8Q8B4_ORYSI SKIP interacting protein 28 (Fragment)
           OS=Oryza sativa subsp. indica GN=SIP28 PE=2 SV=1
          Length = 304

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 31/110 (28%), Positives = 55/110 (50%)
 Frame = -2

Query: 336 SRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADIL 157
           S + +  E LD  +++AK  K ++   +E    +                 ++  G  IL
Sbjct: 1   STHSVSIESLDDSISDAKSNKNDLLPSLELVSKMIQDVEVLEEKAEVAKHESSIAGTSIL 60

Query: 156 LKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQE 7
            KV  +++ +   + A D+ A EV+GE+S+L+ EAREL+SRL     E++
Sbjct: 61  TKVGKLKEMLNHAKEANDMHACEVFGEKSILTTEARELQSRLQRLSDERK 110


>tr|A2Z5V9|A2Z5V9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33036 PE=4 SV=1
          Length = 589

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 31/110 (28%), Positives = 55/110 (50%)
 Frame = -2

Query: 336 SRYIIDTEDLDKLVAEAKCQKENVRKGMEDTYLLRXXXXXXXXXXXXXXXXATRGGADIL 157
           S + +  E LD  +++AK  K ++   +E    +                 ++  G  IL
Sbjct: 286 STHSVSIESLDDSISDAKSNKNDLLPSLELVSKMIQDVEVLEEKAEVAKHESSIAGTSIL 345

Query: 156 LKVADMRKQMLRERAAYDLRAAEVYGERSVLSMEARELRSRLLETQAEQE 7
            KV  +++ +   + A D+ A EV+GE+S+L+ EAREL+SRL     E++
Sbjct: 346 TKVGKLKEMLNHAKEANDMHACEVFGEKSILTTEARELQSRLQRLSDERK 395