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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917326
Clone id YMU001_000099_D07
Library
Length 258
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCCTTAGAATTTCCTAAATGAACTTGTGCTGTCAACAGATGGGTACCATGACTCACTTAG
ATCATCGTAAACACGGAGCTTACGACCATCAGGGTCAATCAAAAGCATAGAGCTGCCCGT
GAAGTGACATGCTTGGATTATGCCAACCGGACACAAGGCCATCACCAGCAAGCGCCCAGG
AGCTACATCTGCGTGTGTTGCTCATGAGGGGGCGCATGTGTCGTCTTGGCATGAGTTGCT
CATGAGGGGGGCAGACGC
■■Homology search results ■■ -
sp_hit_id Q93W93
Definition sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270 OS=Arabidopsis thaliana
Align length 29
Score (bit) 40.8
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917326|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_D07.
         (258 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270 OS=Ar...    41   1e-05
sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio reri...    30   3.7  
sp|Q91C28|VGLG_DUVV Glycoprotein G OS=Duvenhage virus GN=G PE=3 ...    29   6.3  
sp|P34795|G6PI_ARATH Glucose-6-phosphate isomerase, cytosolic OS...    29   6.3  
sp|Q9FXM5|G6PI_ARAGE Glucose-6-phosphate isomerase, cytosolic OS...    29   6.3  
sp|Q9QSP1|VGLG_ABLVB Glycoprotein G OS=Australian bat lyssavirus...    29   8.2  

>sp|Q93W93|FBK22_ARATH F-box/Kelch-repeat protein At1g55270
           OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1
          Length = 434

 Score = 40.8 bits (94), Expect(2) = 1e-05
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -3

Query: 184 SSWALAGDGLVSGWHNPSMSLHGQLYAFD 98
           +SW+   DG+V+GW NP  SL+G+LY  D
Sbjct: 299 NSWSPVSDGMVAGWRNPCTSLNGRLYGLD 327



 Score = 27.7 bits (60), Expect(2) = 1e-05
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRV+D+ ++SW   +DS
Sbjct: 330 DGCKLRVFDESTDSWNKFMDS 350


>sp|Q4U2V3|CBPC1_DANRE Cytosolic carboxypeptidase 1 OS=Danio rerio
            GN=agtpbp1 PE=2 SV=1
          Length = 1153

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 238  QLMPRRHMRPLMSNTRRCSSWALAGDGLVSGWHNPSMSLHGQLY 107
            ++MP  +   +++   RCS   L+G+ L   W NP+  LH  +Y
Sbjct: 879  KIMPMLNPDGVINGNHRCS---LSGEDLNRQWQNPNAELHPTIY 919


>sp|Q91C28|VGLG_DUVV Glycoprotein G OS=Duvenhage virus GN=G PE=3
           SV=1
          Length = 533

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 226 RRHMRPLMSNTRRCSSWALAGD-GLVSGWHNPSMSLH 119
           RRH RP +++ R   +W +AGD       HNP    H
Sbjct: 103 RRHFRPSVNSCRDAYNWKIAGDPRYEESLHNPYPDSH 139


>sp|P34795|G6PI_ARATH Glucose-6-phosphate isomerase, cytosolic
           OS=Arabidopsis thaliana GN=PGIC PE=2 SV=1
          Length = 560

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 244 HEQLMPRRHMRPLMSNTRRCSSWALAGDGLV 152
           H + + + H+R LMS+  RC S  +  DGL+
Sbjct: 20  HVEDIKKTHLRDLMSDANRCQSMMMEFDGLL 50


>sp|Q9FXM5|G6PI_ARAGE Glucose-6-phosphate isomerase, cytosolic
           OS=Arabis gemmifera GN=PGIC PE=3 SV=2
          Length = 560

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 244 HEQLMPRRHMRPLMSNTRRCSSWALAGDGLV 152
           H + + + H+R LMS+  RC S  +  DGL+
Sbjct: 20  HVEDIKKTHLRDLMSDANRCQSMMMEFDGLL 50


>sp|Q9QSP1|VGLG_ABLVB Glycoprotein G OS=Australian bat lyssavirus
           (isolate Bat/AUS/1996) GN=G PE=1 SV=1
          Length = 525

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 226 RRHMRPLMSNTRRCSSWALAGD-GLVSGWHNPSMSLH 119
           R+H RP   + R+  +W +AGD       HNP    H
Sbjct: 103 RKHFRPTPESCRKAYNWKIAGDPRYEESLHNPYPDYH 139
tr_hit_id A7PF14
Definition tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 28
Score (bit) 43.1
E-value 9.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917326|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_D07.
         (258 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genom...    43   9e-07
tr|A5BHH2|A5BHH2_VITVI Putative uncharacterized protein OS=Vitis...    43   9e-07
tr|A5C9A3|A5C9A3_VITVI Putative uncharacterized protein (Chromos...    45   5e-06
tr|A9RGV2|A9RGV2_PHYPA Predicted protein OS=Physcomitrella paten...    40   2e-04
tr|B6U1Z3|B6U1Z3_MAIZE Kelch motif family protein OS=Zea mays PE...    37   0.004
tr|B6TP81|B6TP81_MAIZE Ring canal kelch OS=Zea mays PE=2 SV=1          38   0.006
tr|A5BUP5|A5BUP5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.007
tr|B6SS62|B6SS62_MAIZE Kelch motif family protein OS=Zea mays PE...    39   0.016
tr|A0SHJ8|A0SHJ8_ORYRU Kelch-motif containing protein (Fragment)...    36   0.016
tr|A0SHJ5|A0SHJ5_ORYRU Kelch-motif containing protein (Fragment)...    36   0.016
tr|A0SHJ3|A0SHJ3_ORYSI Kelch-motif containing protein (Fragment)...    36   0.016
tr|A3AEI2|A3AEI2_ORYSJ Putative uncharacterized protein OS=Oryza...    35   0.026
tr|Q8S7U1|Q8S7U1_ORYSJ Putative Kelch motif containing protein O...    35   0.026
tr|Q7XES2|Q7XES2_ORYSJ Os10g0409900 protein OS=Oryza sativa subs...    35   0.026
tr|B8BGS5|B8BGS5_ORYSI Putative uncharacterized protein OS=Oryza...    35   0.026
tr|A3C4N2|A3C4N2_ORYSJ Putative uncharacterized protein OS=Oryza...    35   0.026
tr|Q10R89|Q10R89_ORYSJ Os03g0167800 protein OS=Oryza sativa subs...    35   0.026
tr|B8APA1|B8APA1_ORYSI Putative uncharacterized protein OS=Oryza...    35   0.026
tr|A0SHK4|A0SHK4_ORYRU Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHK1|A0SHK1_ORYRU Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHJ6|A0SHJ6_ORYRU Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHJ4|A0SHJ4_ORYSI Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHJ2|A0SHJ2_ORYSI Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHJ1|A0SHJ1_ORYSI Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHJ0|A0SHJ0_ORYSJ Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHI9|A0SHI9_ORYSJ Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHI8|A0SHI8_ORYSJ Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHI7|A0SHI7_ORYSJ Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHI5|A0SHI5_ORYNI Kelch-motif containing protein (Fragment)...    35   0.027
tr|A0SHI3|A0SHI3_9ORYZ Kelch-motif containing protein (Fragment)...    35   0.027

>tr|A7PF14|A7PF14_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016869001
           PE=4 SV=1
          Length = 428

 Score = 43.1 bits (100), Expect(2) = 9e-07
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = -3

Query: 181 SWALAGDGLVSGWHNPSMSLHGQLYAFD 98
           SW    DG+V+GW NPS SL+GQLYA D
Sbjct: 289 SWYPVYDGMVAGWRNPSASLNGQLYALD 316



 Score = 32.7 bits (73), Expect(2) = 9e-07
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRVYD++S+SW   +DS
Sbjct: 319 DGCKLRVYDEVSDSWSKHIDS 339


>tr|A5BHH2|A5BHH2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_011673 PE=4 SV=1
          Length = 428

 Score = 43.1 bits (100), Expect(2) = 9e-07
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = -3

Query: 181 SWALAGDGLVSGWHNPSMSLHGQLYAFD 98
           SW    DG+V+GW NPS SL+GQLYA D
Sbjct: 289 SWYPVYDGMVAGWRNPSASLNGQLYALD 316



 Score = 32.7 bits (73), Expect(2) = 9e-07
 Identities = 13/21 (61%), Positives = 17/21 (80%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRVYD++S+SW   +DS
Sbjct: 319 DGCKLRVYDEVSDSWSKHIDS 339


>tr|A5C9A3|A5C9A3_VITVI Putative uncharacterized protein (Chromosome
           chr6 scaffold_3, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00024761001 PE=4 SV=1
          Length = 437

 Score = 44.7 bits (104), Expect(2) = 5e-06
 Identities = 17/29 (58%), Positives = 23/29 (79%)
 Frame = -3

Query: 184 SSWALAGDGLVSGWHNPSMSLHGQLYAFD 98
           ++W    DG+V+GW NPS+SL+GQLYA D
Sbjct: 298 NTWTPISDGMVAGWRNPSISLNGQLYALD 326



 Score = 28.5 bits (62), Expect(2) = 5e-06
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRVYD  ++SW   +DS
Sbjct: 329 DGCKLRVYDSDTDSWNKFIDS 349


>tr|A9RGV2|A9RGV2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_202273 PE=4 SV=1
          Length = 426

 Score = 40.4 bits (93), Expect(2) = 2e-04
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = -3

Query: 178 WALAGDGLVSGWHNPSMSLHGQLYAFD 98
           W    DG+V+GW NP + LHG LYA D
Sbjct: 290 WTPVMDGMVAGWRNPCVELHGNLYALD 316



 Score = 27.7 bits (60), Expect(2) = 2e-04
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLR+YD  +++W  SVDS
Sbjct: 319 DGCKLRMYDRDTDAWSRSVDS 339


>tr|B6U1Z3|B6U1Z3_MAIZE Kelch motif family protein OS=Zea mays PE=2
           SV=1
          Length = 437

 Score = 37.4 bits (85), Expect(2) = 0.004
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -3

Query: 184 SSWALAGDGLVSGWHNPSMSLHGQLYAFD 98
           ++W+   D +V+GW NPS+S +G+LY+ D
Sbjct: 298 NTWSAIDDEMVTGWRNPSISFNGRLYSAD 326



 Score = 25.8 bits (55), Expect(2) = 0.004
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRVYD+ + +W   +DS
Sbjct: 329 DGCKLRVYDENTGTWTRFMDS 349


>tr|B6TP81|B6TP81_MAIZE Ring canal kelch OS=Zea mays PE=2 SV=1
          Length = 418

 Score = 38.1 bits (87), Expect(2) = 0.006
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = -3

Query: 181 SWALAGDGLVSGWHNPSMSLHGQLYA 104
           SW++  DG+V+GW +PS  L+G+LYA
Sbjct: 288 SWSIVLDGMVTGWRSPSACLNGRLYA 313



 Score = 24.6 bits (52), Expect(2) = 0.006
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG +LR YD+  ++W    DS
Sbjct: 318 DGCRLRAYDEAVDAWSTCADS 338


>tr|A5BUP5|A5BUP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029619 PE=4 SV=1
          Length = 116

 Score = 36.6 bits (83), Expect(2) = 0.007
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = -3

Query: 157 LVSGWHNPSMSLHGQLYAFD 98
           +V+GW NPS+SL+GQLYA D
Sbjct: 1   MVAGWRNPSISLNGQLYALD 20



 Score = 26.2 bits (56), Expect(2) = 0.007
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 87 GRKLRVYDDLSESWYPSVDS 28
          G KLRVYD  ++SW   +DS
Sbjct: 24 GCKLRVYDSDTDSWNKFIDS 43


>tr|B6SS62|B6SS62_MAIZE Kelch motif family protein OS=Zea mays PE=2
           SV=1
          Length = 439

 Score = 38.9 bits (89), Expect(2) = 0.016
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = -3

Query: 178 WALAGDGLVSGWHNPSMSLHGQLYAFD 98
           W+  G+ +V+GW NPS+SL+G LY+ D
Sbjct: 301 WSATGNEMVTGWRNPSISLNGHLYSAD 327



 Score = 22.3 bits (46), Expect(2) = 0.016
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRVY+    SW   +D+
Sbjct: 330 DGCKLRVYNREMGSWTRFIDT 350


>tr|A0SHJ8|A0SHJ8_ORYRU Kelch-motif containing protein (Fragment)
           OS=Oryza rufipogon PE=4 SV=1
          Length = 375

 Score = 36.2 bits (82), Expect(2) = 0.016
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 214 RPLMSNTRRCSS--WALAGDGLVSGWHNPSMSLHGQLYAFD 98
           R +MS     SS  W+   D +V+GW NPS++ +G+LY+ D
Sbjct: 240 RQVMSEVYLPSSNLWSTIDDEMVTGWRNPSITFNGKLYSSD 280



 Score = 25.0 bits (53), Expect(2) = 0.016
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRVYD  + +W   +DS
Sbjct: 283 DGCKLRVYDPNTGTWAKFMDS 303


>tr|A0SHJ5|A0SHJ5_ORYRU Kelch-motif containing protein (Fragment)
           OS=Oryza rufipogon PE=4 SV=1
          Length = 375

 Score = 36.2 bits (82), Expect(2) = 0.016
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -3

Query: 214 RPLMSNTRRCSS--WALAGDGLVSGWHNPSMSLHGQLYAFD 98
           R +MS     SS  W+   D +V+GW NPS++ +G+LY+ D
Sbjct: 240 RQVMSEVYLPSSNLWSTIDDEMVTGWRNPSITFNGKLYSSD 280



 Score = 25.0 bits (53), Expect(2) = 0.016
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 90  DGRKLRVYDDLSESWYPSVDS 28
           DG KLRVYD  + +W   +DS
Sbjct: 283 DGCKLRVYDPNTGTWAKFMDS 303