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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917340
Clone id YMU001_000099_F01
Library
Length 399
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_F01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAAGGAAAAGGGGAATAGAGATAAAAATAGCGTCTAGTTCCTACACATCTAAACAAAGAT
GCCCATACAAGAGCTGTACTCAAGTGTTCACTTGCCAATACGGACATGCTTTGATCTGAA
AGCATGCCCAAGAATAAGCTTGCATTGCCATAAAACGTTGCCGACCGCGCAGTAGCACAC
CGACGCAATAAAAAAACAAGGCACTAACGCTGCCAACTTAAATTGGAGTCCAATTGGAAG
GCCCCTGGCACCATAGCATCAATGCATCCGCCTTTCCACTTGCTAAACTTCTTCTATCAG
TTATAAATACAATCCCCAGCATTGTCGTCATCGGTGATTGCCGCTGTCGCAAGAATGGAG
GATGACATGATGCTATTCCTCATTGTTTGCACCACAAAG
■■Homology search results ■■ -
sp_hit_id Q9SZZ9
Definition sp|Q9SZZ9|FBK89_ARATH F-box/Kelch-repeat protein At4g25710 OS=Arabidopsis thaliana
Align length 21
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917340|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_F01.
         (399 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SZZ9|FBK89_ARATH F-box/Kelch-repeat protein At4g25710 OS=Ar...    32   1.3  

>sp|Q9SZZ9|FBK89_ARATH F-box/Kelch-repeat protein At4g25710
           OS=Arabidopsis thaliana GN=At4g25710 PE=2 SV=1
          Length = 390

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 198 CFFIASVCYCAVGNVLWQCKL 136
           C F+ S C+C VGNVL+ C +
Sbjct: 271 CEFMFSKCFCVVGNVLYSCAI 291
tr_hit_id A9TRU4
Definition tr|A9TRU4|A9TRU4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 130
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917340|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_F01.
         (399 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TRU4|A9TRU4_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.13 
tr|Q6K858|Q6K858_ORYSJ Os02g0292800 protein OS=Oryza sativa subs...    35   1.4  
tr|A2X3M9|A2X3M9_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.4  
tr|B6QYQ8|B6QYQ8_9RHOB Putative uncharacterized protein OS=Pseud...    34   4.1  
tr|A7PGZ2|A7PGZ2_VITVI Chromosome chr17 scaffold_16, whole genom...    34   4.1  
tr|Q84ZM4|Q84ZM4_ORYSJ Putative uncharacterized protein OJ1066_B...    33   7.0  
tr|Q84ZM3|Q84ZM3_ORYSJ Os08g0153900 protein OS=Oryza sativa subs...    33   7.0  
tr|Q0J7Z1|Q0J7Z1_ORYSJ Os08g0153800 protein OS=Oryza sativa subs...    33   7.0  
tr|B8BAV5|B8BAV5_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|B4FBD7|B4FBD7_MAIZE Putative uncharacterized protein OS=Zea m...    33   7.0  
tr|A3BPQ4|A3BPQ4_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|A2YRB1|A2YRB1_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  

>tr|A9TRU4|A9TRU4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_197597 PE=4 SV=1
          Length = 246

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAITDDDNAGDCIYN**KKFSKWKGGCIDAMVPGAF----QLDS 225
           VQT+RNSIM+S++LA+ AIT     G  +       S   GG    +    +     + S
Sbjct: 66  VQTLRNSIMASTLLASTAITLSSIIGALV-------SSTSGGTSRTLTHFVYGETGNITS 118

Query: 224 NLSWQR*CLVFLLRRCATARSATFYGNASLFLGMLSDQSMSVLASEHLSTALVWASLFRC 45
            L +    L FL       +S  +  +AS  L +    +   L  E+++  +  +  F  
Sbjct: 119 TLKYLCLLLCFLFSFVCHVQSIRYASHASFLLSIPVGDNSPGLTPEYVNEFIFRSQNFFT 178

Query: 44  VGTRRYFYLY 15
           +G R Y++ +
Sbjct: 179 LGLRGYYFSF 188


>tr|Q6K858|Q6K858_ORYSJ Os02g0292800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1124_E11.34 PE=2 SV=1
          Length = 250

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAITDDDNAGDCIYN**KKFSKWKGGCIDAMVPG-------AFQ 234
           VQT+RN+IM+S++LA+ AIT        +       S   GG  D ++PG       A +
Sbjct: 65  VQTIRNNIMASTLLASTAITLSSLIAILM-------SSAGGGGGDGLLPGAPLVVGAAGE 117

Query: 233 LDSNLSWQR*CLVFLLRRCATARSATFYGNASLFLG----MLSDQSMSVLASEHLSTALV 66
              ++ +    + FL+      +S  +Y + S  +     ++  +    LA ++++  L 
Sbjct: 118 TALSVKFFAILVCFLVAFLLNVQSIRYYSHTSTLVNVPVRLIQRRRRPGLAVDYVTATLN 177

Query: 65  WASLFRCVGTRRYFY-------LYSPFP 3
             S F  +G R +++       L+ P P
Sbjct: 178 RGSYFWSLGARAFYFSCPVFLWLFGPIP 205


>tr|A2X3M9|A2X3M9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06822 PE=4 SV=1
          Length = 250

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 35/148 (23%), Positives = 66/148 (44%), Gaps = 18/148 (12%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAITDDDNAGDCIYN**KKFSKWKGGCIDAMVPG-------AFQ 234
           VQT+RN+IM+S++LA+ AIT        +       S   GG  D ++PG       A +
Sbjct: 65  VQTIRNNIMASTLLASTAITLSSLIAILM-------SSAGGGGGDGLLPGAPLVVGAAGE 117

Query: 233 LDSNLSWQR*CLVFLLRRCATARSATFYGNASLFLG----MLSDQSMSVLASEHLSTALV 66
              ++ +    + FL+      +S  +Y + S  +     ++  +    LA ++++  L 
Sbjct: 118 TALSVKFFAILVCFLVAFLLNVQSIRYYSHTSTLVNVPVRLIQRRRRPGLAVDYVTATLN 177

Query: 65  WASLFRCVGTRRYFY-------LYSPFP 3
             S F  +G R +++       L+ P P
Sbjct: 178 RGSYFWSLGARAFYFSCPVFLWLFGPIP 205


>tr|B6QYQ8|B6QYQ8_9RHOB Putative uncharacterized protein
           OS=Pseudovibrio sp. JE062 GN=PJE062_1809 PE=4 SV=1
          Length = 349

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 235 NWTPI*VG-SVSALFFYCVGVLLRGRQRFMAMQAYSWACFQI 113
           NW    +G  +SA+FF+C  VL+ G   F A+  Y W    I
Sbjct: 83  NWLAFQLGFGISAVFFFCAVVLVVGLMMFAALTPYPWLAMAI 124


>tr|A7PGZ2|A7PGZ2_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017744001
           PE=4 SV=1
          Length = 241

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAITDDDNAGDCIYN**KKFSKWKGGCIDAMVPGAFQLDSNLSW 213
           VQT+RN+IM++++LAT AIT        +       SK        +      L S++ +
Sbjct: 64  VQTIRNNIMAATLLATTAITLSSLISVFV----SSTSKSSSTASVLVYGNKTSLVSSIKY 119

Query: 212 QR*CLVFLLRRCATARSATFYGNASLFLGMLSDQSMSVLASEHLSTALVWASLFRCVGTR 33
               L FL+      +S  +Y + S FL  L        + E+++  L   S+F  +G R
Sbjct: 120 FSILLCFLVAFLCNVQSIRYYAHVS-FLVTLPTSMGKRDSIEYVARNLDRGSIFWSLGLR 178

Query: 32  RYF-------YLYSPFP 3
            ++       +++ P P
Sbjct: 179 AFYLSFPLFLWIFGPIP 195


>tr|Q84ZM4|Q84ZM4_ORYSJ Putative uncharacterized protein
           OJ1066_B03.112 (Putative uncharacterized protein
           OJ1349_D05.133) OS=Oryza sativa subsp. japonica
           GN=OJ1066_B03.112 PE=4 SV=1
          Length = 247

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAIT 333
           VQTMRNSIM+S++LA+ AIT
Sbjct: 63  VQTMRNSIMASTVLASVAIT 82


>tr|Q84ZM3|Q84ZM3_ORYSJ Os08g0153900 protein OS=Oryza sativa subsp.
           japonica GN=OJ1066_B03.114 PE=2 SV=1
          Length = 276

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAIT 333
           VQTMRNSIM+S++LA+ AIT
Sbjct: 68  VQTMRNSIMASTVLASVAIT 87


>tr|Q0J7Z1|Q0J7Z1_ORYSJ Os08g0153800 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0153800 PE=4 SV=1
          Length = 235

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAIT 333
           VQTMRNSIM+S++LA+ AIT
Sbjct: 51  VQTMRNSIMASTVLASVAIT 70


>tr|B8BAV5|B8BAV5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27840 PE=4 SV=1
          Length = 247

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAIT 333
           VQTMRNSIM+S++LA+ AIT
Sbjct: 63  VQTMRNSIMASTVLASVAIT 82


>tr|B4FBD7|B4FBD7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 318

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 8/138 (5%)
 Frame = -2

Query: 392 VQTMRNSIMSSSILATAAITDDDNAGDCIYN**KKFSKWKGGCIDAMVPGAFQLDSNLSW 213
           VQT+RN+IM+S++LA+ AIT        +       +   GG + +   G  +      +
Sbjct: 138 VQTLRNTIMASTVLASVAITLSSLVAALM----ASGAAAHGGLLLSAPGGGSEAALAAKF 193

Query: 212 QR*CLVFLLRRCATARSATFYGNASLFLGM-LSDQSMSVLASEHLSTALVWASLFRCVGT 36
               + FL+      +S  +Y +  L + + L+       A  +++ AL     F  +G 
Sbjct: 194 LAVLVCFLVAFLLNVQSIRYYSHTGLLVNVPLAAHRRPARAVGYVTAALNRGFYFWSLGV 253

Query: 35  RRYFY-------LYSPFP 3
           R Y++       L+ P P
Sbjct: 254 RAYYFSCPVFLWLFGPVP 271