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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917349
Clone id YMU001_000099_G01
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_G01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGGTGGTGGTGGCTCATGTGCTGGACGATACCACGAAAAGAAAGCCACTTTATTCATATC
CACGTGTACGGTCCGGGTTGAATAACCATATACCCCATATAATTTAGTGAACATCAAAAA
CTTGAAATAATCTCACCAAAACAAACCATAAATCATATACGAACAACTAGTCCAATTTCA
CGACCCAATCTCCCCTAAACGAAGAATTTGGATATCAAAGGATACACCAAGAATTGAACC
AAACTTCATTTGGATGCCAAAAGACACACTACAAAGTTTGTCTAAGTGAGGTCGAAGTCA
ATCACGATATTCACCCAAATCTATGAAGGAAAGACTAGTAGCCAAGCTTGATCCACCACC
GGTCATCCATCCTCCAAAGGTCCAAAAAATACAAGTATCAGATATAAAAAGGTATGGGTA
CCTAAGCAACTTGTTACTGCTCAAAATTCGATTCATCCCTTGGAGCTGAGAGGCCATGCA
TACTCCCATCTAGTATAACCAATTCCTCATCTTTGCAAAGATCAGATTGTGAAA
■■Homology search results ■■ -
sp_hit_id Q8NFC6
Definition sp|Q8NFC6|FA44A_HUMAN Protein FAM44A OS=Homo sapiens
Align length 56
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917349|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_G01.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NFC6|FA44A_HUMAN Protein FAM44A OS=Homo sapiens GN=FAM44A P...    32   1.5  
sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus mu...    31   4.3  
sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6 OS=...    30   7.3  

>sp|Q8NFC6|FA44A_HUMAN Protein FAM44A OS=Homo sapiens GN=FAM44A PE=1
           SV=2
          Length = 3051

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 106 SEHQKLEIISPKQTINHIRTTSPISRPNLP*TKNLDIKGYTKN*TKLHLDAKRHTT 273
           SEH + E IS  + + H+   S  S+P    +++L +    KN +KL  + KR T+
Sbjct: 604 SEHCEKEKISSSKELKHVHAKSEPSKPARRLSESLHVVDENKNESKLEREHKRRTS 659


>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus
           musculus GN=Gtf2a1l PE=2 SV=2
          Length = 468

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 332 RLVAKLDPPPVIHPPKVQKIQVSD 403
           R+ A L PPP++HPP V +  V +
Sbjct: 188 RMEAVLQPPPILHPPPVDRTHVEN 211


>sp|Q9GYH7|RME6_CAEEL Receptor-mediated endocytosis protein 6
           OS=Caenorhabditis elegans GN=rme-6 PE=1 SV=2
          Length = 1093

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = +2

Query: 152 IIYEQLVQFHDPISPKRRIWISKDTPRIEPNFIWMPKDTLQSLSK*GRSQSRYS-PKSMK 328
           ++  +LV F D         ISK  P + PN  W+ +D   SL +     S      + K
Sbjct: 253 LVVSKLVDFVDTFLEN----ISKALPMLPPNLNWIIRDIFCSLYEVVDDVSAIELSHACK 308

Query: 329 ERLVAKLDPPPVIHPPKVQKIQVSDIKRYGYLSNLLLLKIRFI 457
           + +V+ L  P +I P K   +  +D+ R G + N  L++I  I
Sbjct: 309 DMIVSNLICPAIISPQKFGVVD-NDV-RVGTIVNHNLVQIAMI 349
tr_hit_id Q2QU35
Definition tr|Q2QU35|Q2QU35_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica
Align length 66
Score (bit) 35.8
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917349|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_G01.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QU35|Q2QU35_ORYSJ Retrotransposon protein, putative, unclas...    36   1.4  
tr|A1WPZ6|A1WPZ6_VEREI Molybdopterin oxidoreductase OS=Vermineph...    35   1.8  
tr|Q7X749|Q7X749_ORYSJ OSJNBa0016N04.1 protein OS=Oryza sativa s...    35   3.2  
tr|Q01KR6|Q01KR6_ORYSA OSIGBa0092J07.1 protein (OSIGBa0146I21.6 ...    35   3.2  
tr|Q3AG02|Q3AG02_CARHZ Anion transporter family protein OS=Carbo...    34   4.2  
tr|Q7XMR7|Q7XMR7_ORYSA OSJNBa0029L02.20 protein OS=Oryza sativa ...    34   5.4  
tr|Q6ATH7|Q6ATH7_ORYSJ Putative polyprotein OS=Oryza sativa subs...    34   5.4  
tr|Q55DW9|Q55DW9_DICDI MYND-type Zn finger-containing protein OS...    34   5.4  
tr|A3J0E7|A3J0E7_9FLAO Probable bacterial cryptochrome OS=Flavob...    34   5.5  
tr|A2SE33|A2SE33_METPP Molybdopterin oxidoreductase family prote...    33   7.0  
tr|B7YKG3|B7YKG3_VARPD Molybdopterin oxidoreductase OS=Variovora...    33   7.0  
tr|Q53NA3|Q53NA3_ORYSJ Retrotransposon protein, putative, unclas...    33   9.2  

>tr|Q2QU35|Q2QU35_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g17620 PE=4 SV=1
          Length = 1123

 Score = 35.8 bits (81), Expect = 1.4
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = +2

Query: 227 PRIEPNFIWMPKD---TLQSLSK*GRSQSRYSPKS--MKERLVAKLDPPPVIHPPKVQKI 391
           PR EPN  WMPKD   T +   +  R+Q     K+   +++   +L PPPV  P  ++K 
Sbjct: 166 PRTEPNPRWMPKDLTATQKRRLQCLRAQELREKKAEEQRDKRFNELRPPPVWRPKSIEKA 225

Query: 392 QVSDIK 409
           +  D++
Sbjct: 226 KPIDVE 231


>tr|A1WPZ6|A1WPZ6_VEREI Molybdopterin oxidoreductase
           OS=Verminephrobacter eiseniae (strain EF01-2)
           GN=Veis_3996 PE=4 SV=1
          Length = 979

 Score = 35.4 bits (80), Expect = 1.8
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 230 RIEPNFIWMPKDTLQS--LSK*GRSQSRYSPKSMKERLVAKLDPPPVIHPP 376
           R +P  + +  DTLQS  L+  G+S  R  P++++ER+    DP P  +PP
Sbjct: 738 RNDPVQLALYSDTLQSFRLAAQGKSTGRQPPEALRERIATYFDPLPFWYPP 788


>tr|Q7X749|Q7X749_ORYSJ OSJNBa0016N04.1 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0016N04.1 PE=4 SV=2
          Length = 1704

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = +2

Query: 227 PRIEPNFIWMPKD---TLQSLSK*GRSQSRYSPKS--MKERLVAKLDPPPVIHPPKVQKI 391
           P IEPN  WMPKD   T +   +  R+Q     K+   +++   +L PPPV  P  ++K 
Sbjct: 762 PGIEPNPRWMPKDLTATQKKRLQRLRAQELREKKAEEQRDKWFNELRPPPVWRPKSIEKE 821

Query: 392 QVSDIK 409
           +  D++
Sbjct: 822 KPIDVE 827


>tr|Q01KR6|Q01KR6_ORYSA OSIGBa0092J07.1 protein (OSIGBa0146I21.6
           protein) OS=Oryza sativa GN=OSIGBa0092J07.1 PE=4 SV=1
          Length = 1704

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
 Frame = +2

Query: 227 PRIEPNFIWMPKD---TLQSLSK*GRSQSRYSPKS--MKERLVAKLDPPPVIHPPKVQKI 391
           P IEPN  WMPKD   T +   +  R+Q     K+   +++   +L PPPV  P  ++K 
Sbjct: 762 PGIEPNPRWMPKDLTATQKKRLQRLRAQELREKKAEEQRDKWFNELRPPPVWRPKSIEKE 821

Query: 392 QVSDIK 409
           +  D++
Sbjct: 822 KPIDVE 827


>tr|Q3AG02|Q3AG02_CARHZ Anion transporter family protein
           OS=Carboxydothermus hydrogenoformans (strain Z-2901 /
           DSM 6008) GN=CHY_0060 PE=4 SV=1
          Length = 466

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 198 LGEIGS*NW--TSCSYMIYGLFW*DYFKFLMFTKLYGVYGYSTRTVHVDMNKVAFFSWYR 25
           L E+G   W   +   MI G+ W   F  L+   LY  YG+++ T H+     AF S   
Sbjct: 333 LSELGFIPWFAKNVGNMISGISWFWAFVILLVVYLYAHYGFASLTAHITAMYAAFASVAV 392

Query: 24  PAHEPP 7
            A  PP
Sbjct: 393 AAGAPP 398


>tr|Q7XMR7|Q7XMR7_ORYSA OSJNBa0029L02.20 protein OS=Oryza sativa
           GN=OSJNBa0029L02.20 PE=4 SV=1
          Length = 1518

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = +2

Query: 227 PRIEPNFIWMPKD---TLQSLSK*GRSQSRYSPKS--MKERLVAKLDPPPVIHPPKVQKI 391
           P IEPN  WMPKD   T +   +  R+Q     K+   +++   +L PPPV  P  ++K 
Sbjct: 457 PGIEPNPRWMPKDLTATQKRRLQRLRAQEIREKKAEEQRDKRFNELRPPPVWRPKSIEKE 516

Query: 392 QVSDI 406
           +  DI
Sbjct: 517 KPVDI 521


>tr|Q6ATH7|Q6ATH7_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0093E24.4 PE=4 SV=1
          Length = 1941

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +2

Query: 227  PRIEPNFIWMPKD---TLQSLSK*GRSQSRYSPKS--MKERLVAKLDPPPVIHPPKVQKI 391
            P  EPN  WMPKD   T +   +  R+Q     K+   +++   +L PPPV  P  ++K 
Sbjct: 819  PGTEPNPRWMPKDLTATQKRRLQRLRAQELREKKTEEQRDKRFNELQPPPVWRPKSIEKA 878

Query: 392  QVSDIK 409
            +  D++
Sbjct: 879  KPIDVE 884


>tr|Q55DW9|Q55DW9_DICDI MYND-type Zn finger-containing protein
           OS=Dictyostelium discoideum GN=gacZ PE=4 SV=1
          Length = 1043

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +3

Query: 153 SYTNN*SNFTTQSPLNEEFGYQRIHQELNQTSFGCQKTHYKVCLSEVEVNHD 308
           S +NN SN       NEE G + I  +L+Q +FG     +K   S+V  N D
Sbjct: 394 SNSNNSSNIENSDNTNEENGMKNIKNKLSQINFGAPPPSFKKPTSKVIENED 445


>tr|A3J0E7|A3J0E7_9FLAO Probable bacterial cryptochrome
           OS=Flavobacteria bacterium BAL38 GN=FBBAL38_03455 PE=3
           SV=1
          Length = 440

 Score = 33.9 bits (76), Expect = 5.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 159 YMIYGLFW*DYFKFLMF---TKLYGVYGYSTRTVHVDMNKVAFFSW 31
           ++I+ L W DYFK++      K++ + G   +  H + NK AF  W
Sbjct: 289 WLIFELIWRDYFKYISLKHGNKIFQLNGILQKEYHWNQNKKAFNQW 334


>tr|A2SE33|A2SE33_METPP Molybdopterin oxidoreductase family protein
           OS=Methylibium petroleiphilum (strain PM1) GN=Mpe_A0860
           PE=4 SV=1
          Length = 981

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 230 RIEPNFIWMPKDTLQS--LSK*GRSQSRYSPKSMKERLVAKLDPPPVIHPP 376
           R +P  + +  DTLQS  L+  G++  R  P+ ++ER+    DP P  +PP
Sbjct: 738 RNDPVQLALYSDTLQSFRLAAQGKTPGRQPPEHLRERIATYFDPLPFWYPP 788