BP917351 |
Clone id |
YMU001_000099_G03 |
Library |
YMU01 |
Length |
467 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000099_G03. |
Accession |
BP917351 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2059Contig1 |
Sequence |
CAGGAAACAAGGGGTTTGGAGATTTTGGAAAGAGGACGGACTTGGTATTGTTCCCAAGAG ACCGAGGAGGTGCACTTTTAGGCATAGGAGTGCCAATTGGAATTGGAGAAGGAGGCATCT GTGGTATAGGAGGGGTATGGGGCAGAGGCAAAGGTTTCCAAACATCTGCTTCCTCCCATT CAATCCGTGGAACACTTGAGATAAGAGGATCTGATGTGATGGGTCTAGATGGTAGTGTGA GCATGGGAGGAGATGCATCTCCCTGCTGTGGACTAATCATGGAAGATTCATCAAAATAGA CAGAGTGAGCAAACTGAAATTTTTTCAGCTGAGGGTCATACAACCTGTAAGCTTTCACTC CAAGGCGATCATCATAGCCCACGAACACCATCCTTGTGCTGGTTGGGTCGAGTTTGTGGC GCAAGGAAAGGGCCTTGACAGGGTAGGCTGAACACCCGAAGACTTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P10978 |
Definition |
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum |
Align length |
87 |
Score (bit) |
43.5 |
E-value |
0.0005 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q60DG5 |
Definition |
tr|Q60DG5|Q60DG5_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica |
Align length |
63 |
Score (bit) |
58.5 |
E-value |
2.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917351|Adiantum capillus-veneris mRNA, clone: YMU001_000099_G03. (467 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q60DG5|Q60DG5_ORYSJ Putative polyprotein OS=Oryza sativa subs... 59 2e-07 tr|Q25AF6|Q25AF6_ORYSA H0512B01.8 protein OS=Oryza sativa GN=H05... 57 6e-07 tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 56 8e-07 tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 56 8e-07 tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 56 8e-07 tr|Q2RBR6|Q2RBR6_ORYSJ Os11g0101300 protein OS=Oryza sativa subs... 56 1e-06 tr|Q0D5X2|Q0D5X2_ORYSJ Os07g0528100 protein (Fragment) OS=Oryza ... 56 1e-06 tr|B7EQQ7|B7EQQ7_ORYSJ cDNA clone:J023111N02, full insert sequen... 56 1e-06 tr|A8NGH6|A8NGH6_COPC7 Putative uncharacterized protein OS=Copri... 56 1e-06 tr|Q2QYZ3|Q2QYZ3_ORYSJ Retrotransposon protein, putative, Ty1-co... 55 1e-06 tr|Q01LI0|Q01LI0_ORYSA OSIGBa0134J07.9 protein OS=Oryza sativa G... 55 1e-06 tr|Q2QXM6|Q2QXM6_ORYSJ Retrotransposon protein, putative, unclas... 55 2e-06 tr|Q25AG1|Q25AG1_ORYSA H0512B01.3 protein OS=Oryza sativa GN=H05... 55 2e-06 tr|B8YLY6|B8YLY6_MEDTR Gag-Pol polyprotein OS=Medicago truncatul... 55 2e-06 tr|Q8W3A4|Q8W3A4_ORYSA Putative gag-pol polyprotein OS=Oryza sat... 55 2e-06 tr|Q10KL1|Q10KL1_ORYSJ Retrotransposon protein, putative, unclas... 55 2e-06 tr|Q7Y141|Q7Y141_ORYSJ Putative polyprotein (Retrotransposon pro... 54 3e-06 tr|B8YLY7|B8YLY7_LOTJA Gag-Pol polyprotein OS=Lotus japonicus PE... 54 3e-06 tr|A8PHF5|A8PHF5_COPC7 Putative uncharacterized protein OS=Copri... 54 3e-06 tr|A8P2V5|A8P2V5_COPC7 Putative uncharacterized protein OS=Copri... 54 3e-06 tr|Q8L4X0|Q8L4X0_ORYSJ Os10g0130700 protein OS=Oryza sativa subs... 54 5e-06 tr|Q7XME6|Q7XME6_ORYSJ OSJNBa0061G20.13 protein OS=Oryza sativa ... 54 5e-06 tr|Q01KU7|Q01KU7_ORYSA OSIGBa0115A19.5 protein OS=Oryza sativa G... 54 5e-06 tr|Q01KM9|Q01KM9_ORYSA OSIGBa0097A15.7 protein OS=Oryza sativa G... 54 5e-06 tr|Q7XTU6|Q7XTU6_ORYSA OSJNBb0034I13.10 protein OS=Oryza sativa ... 53 7e-06 tr|Q2QW17|Q2QW17_ORYSJ Retrotransposon protein, putative, Ty1-co... 53 7e-06 tr|Q2QLK1|Q2QLK1_ORYSJ Retrotransposon protein, putative, unclas... 53 7e-06 tr|Q9FWI2|Q9FWI2_ORYSJ Os10g0106900 protein OS=Oryza sativa subs... 53 9e-06 tr|A8N9P1|A8N9P1_COPC7 Putative uncharacterized protein OS=Copri... 53 9e-06 tr|Q337X2|Q337X2_ORYSJ Retrotransposon protein, putative, unclas... 52 1e-05
>tr|Q60DG5|Q60DG5_ORYSJ Putative polyprotein OS=Oryza sativa subsp. japonica GN=B1110B01.4 PE=4 SV=1 Length = 1094
Score = 58.5 bits (140), Expect = 2e-07 Identities = 29/63 (46%), Positives = 38/63 (60%) Frame = -2
Query: 466 QVFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDE 287 +VFGC Y KLD TRMVF+GY+ G KAYR+YDP ++F + V FDE Sbjct: 407 KVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQ--GSKAYRMYDPVSRRFYVSRDVVFDE 464
Query: 286 SSM 278 ++M Sbjct: 465 AAM 467
>tr|Q25AF6|Q25AF6_ORYSA H0512B01.8 protein OS=Oryza sativa GN=H0512B01.8 PE=4 SV=1 Length = 1454
Score = 56.6 bits (135), Expect = 6e-07 Identities = 31/61 (50%), Positives = 41/61 (67%) Frame = -2
Query: 466 QVFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDE 287 + FGC AY VK L+ KLD ST VF+GY++ GVKAYR+ DP+ ++ + A V FDE Sbjct: 754 RTFGCLAY-VKELNDVRKLDDRSTPGVFIGYEE--GVKAYRVLDPRTRRVRLARDVIFDE 810
Query: 286 S 284 S Sbjct: 811 S 811
>tr|B8YLY5|B8YLY5_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 56.2 bits (134), Expect = 8e-07 Identities = 29/71 (40%), Positives = 41/71 (57%) Frame = -2
Query: 463 VFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDES 284 VFGC Y + R KLDP S + +F+GY D VK YRL+DP +K + V F E+ Sbjct: 650 VFGCPVYVMYNSQERTKLDPKSRKCIFLGYAD--NVKGYRLWDPTARKVVVSRDVVFAEN 707
Query: 283 SMISPQQGDAS 251 + S Q+ D++ Sbjct: 708 ELQSEQKNDST 718
>tr|B8YLY4|B8YLY4_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 56.2 bits (134), Expect = 8e-07 Identities = 29/71 (40%), Positives = 41/71 (57%) Frame = -2
Query: 463 VFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDES 284 VFGC Y + R KLDP S + +F+GY D VK YRL+DP +K + V F E+ Sbjct: 650 VFGCPVYVMYNSQERTKLDPKSRKCIFLGYAD--NVKGYRLWDPTARKVVVSRDVVFAEN 707
Query: 283 SMISPQQGDAS 251 + S Q+ D++ Sbjct: 708 ELQSKQKNDST 718
>tr|B8YLY3|B8YLY3_MEDTR Gag-Pol polyprotein OS=Medicago truncatula PE=4 SV=1 Length = 1305
Score = 56.2 bits (134), Expect = 8e-07 Identities = 29/71 (40%), Positives = 41/71 (57%) Frame = -2
Query: 463 VFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDES 284 VFGC Y + R KLDP S + +F+GY D VK YRL+DP +K + V F E+ Sbjct: 650 VFGCPVYVMYNSQERTKLDPKSRKCIFLGYAD--NVKGYRLWDPTARKVVVSRDVVFAEN 707
Query: 283 SMISPQQGDAS 251 + S Q+ D++ Sbjct: 708 ELQSEQKNDST 718
>tr|Q2RBR6|Q2RBR6_ORYSJ Os11g0101300 protein OS=Oryza sativa subsp. japonica GN=Os11g0101300 PE=4 SV=1 Length = 1399
Score = 55.8 bits (133), Expect = 1e-06 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Frame = -2
Query: 466 QVFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDE 287 +VFGC Y A KLD TRMVF+GY+ G KAYR+YDP ++ + V FDE Sbjct: 707 RVFGCVGYVKTAKPNLRKLDDRGTRMVFIGYEQ--GSKAYRMYDPVARRVCVSRDVVFDE 764
Query: 286 SSMIS-----PQQGDA 254 ++ S +GDA Sbjct: 765 TTFWSWSGCEEHEGDA 780
>tr|Q0D5X2|Q0D5X2_ORYSJ Os07g0528100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os07g0528100 PE=4 SV=1 Length = 1187
Score = 55.8 bits (133), Expect = 1e-06 Identities = 28/63 (44%), Positives = 37/63 (58%) Frame = -2
Query: 466 QVFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDE 287 +VFGC Y KLD TRMVF+GY+ G KAYR+YDP ++ + V FDE Sbjct: 500 KVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQ--GSKAYRMYDPVSRRVYVSRDVVFDE 557
Query: 286 SSM 278 ++M Sbjct: 558 AAM 560
>tr|B7EQQ7|B7EQQ7_ORYSJ cDNA clone:J023111N02, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 1094
Score = 55.8 bits (133), Expect = 1e-06 Identities = 28/63 (44%), Positives = 37/63 (58%) Frame = -2
Query: 466 QVFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDE 287 +VFGC Y KLD TRMVF+GY+ G KAYR+YDP ++ + V FDE Sbjct: 407 KVFGCVGYVKTVKPNLRKLDDRGTRMVFIGYEQ--GSKAYRMYDPVSRRVYVSRDVVFDE 464
Query: 286 SSM 278 ++M Sbjct: 465 AAM 467
>tr|A8NGH6|A8NGH6_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_12545 PE=4 SV=1 Length = 753
Score = 55.8 bits (133), Expect = 1e-06 Identities = 33/87 (37%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Frame = -2
Query: 466 QVFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDE 287 +VFGC+AY R L P + + +FVGY G K +R Y+P KKF + FDE Sbjct: 239 RVFGCTAYVFVQKDQRKSLQPHAQKCIFVGYPP--GYKGWRFYNPTTKKFVISERAIFDE 296
Query: 286 S-----SMISPQQGDASPPMLTLPSRP 221 S SP A PP PS P Sbjct: 297 RYFPGLSRASPSTSTAVPPPAVPPSPP 323
>tr|Q2QYZ3|Q2QYZ3_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g01090 PE=4 SV=1 Length = 1465
Score = 55.5 bits (132), Expect = 1e-06 Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 5/76 (6%) Frame = -2
Query: 466 QVFGCSAYPVKALSLRHKLDPTSTRMVFVGYDDRLGVKAYRLYDPQLKKFQFAHSVYFDE 287 +VFGC Y A KLD TRMVF+GY+ G KAYR+YDP ++ + V FDE Sbjct: 773 RVFGCVGYVKTAKPNLRKLDDRGTRMVFIGYEQ--GSKAYRMYDPVAQRVCVSRDVVFDE 830
Query: 286 SSMIS-----PQQGDA 254 ++ S +GDA Sbjct: 831 TTFWSWSGCEEHEGDA 846
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