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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917357
Clone id YMU001_000099_G09
Library
Length 246
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_G09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCCCACTTCTGGTAGACCTTGGTAACTGCCTAAATTAAGCACATAAGCAAATGTTATTG
CATATGTAAGGACATGCAGTCCAAACCCATGACACTGGCAGTTGCCCATGTATCTAAAAC
CGCTTGAGTTAGTCACTGAGCATGCTTTCTCGGCATAGACGTGCCACAGCATGACATCCA
CCCCCTCTGAACCTGCACATCCTCCGGTATGTGCCAACCGCGTCGGATCAAGCATTCTCA
CTATCC
■■Homology search results ■■ -
sp_hit_id Q19345
Definition sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25 OS=Caenorhabditis elegans
Align length 24
Score (bit) 28.9
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917357|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_G09.
         (246 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr...    29   8.3  
sp|Q00335|MU2_REOVL Microtubule-associated protein mu-2 OS=Reovi...    29   8.3  
sp|Q91PK4|MU2_REOVJ Microtubule-associated protein mu-2 OS=Reovi...    29   8.3  
sp|P12418|MU2_REOVD Microtubule-associated protein mu-2 OS=Reovi...    29   8.3  

>sp|Q19345|NHR25_CAEEL Nuclear hormone receptor family member nhr-25
           OS=Caenorhabditis elegans GN=nhr-25 PE=2 SV=1
          Length = 572

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 210 IPEDVQVQRGWMSCCGTSMPRKHA 139
           +P+D Q+ R + S  GTS P KHA
Sbjct: 327 LPDDAQIARIFTSVKGTSKPEKHA 350


>sp|Q00335|MU2_REOVL Microtubule-associated protein mu-2 OS=Reovirus
           type 1 (strain Lang) GN=M1 PE=1 SV=1
          Length = 736

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 219 GWHIPEDVQVQRGWMSC 169
           GWHIP +  +Q GW  C
Sbjct: 619 GWHIPREQLMQDGWCGC 635


>sp|Q91PK4|MU2_REOVJ Microtubule-associated protein mu-2 OS=Reovirus
           type 2 (strain D5/Jones) GN=M1 PE=3 SV=1
          Length = 736

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 219 GWHIPEDVQVQRGWMSC 169
           GWHIP++  +Q GW  C
Sbjct: 619 GWHIPKEHLMQDGWCGC 635


>sp|P12418|MU2_REOVD Microtubule-associated protein mu-2 OS=Reovirus
           type 3 (strain Dearing) GN=M1 PE=1 SV=1
          Length = 736

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 219 GWHIPEDVQVQRGWMSC 169
           GWHIP +  +Q GW  C
Sbjct: 619 GWHIPREQLMQDGWCGC 635
tr_hit_id A9T4A9
Definition tr|A9T4A9|A9T4A9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 25
Score (bit) 41.6
E-value 0.02
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917357|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_G09.
         (246 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T4A9|A9T4A9_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9RLC3|A9RLC3_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.17 
tr|A9RTC4|A9RTC4_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.22 
tr|A9S8W2|A9S8W2_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9S8W1|A9S8W1_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9TRB3|A9TRB3_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.5  
tr|A9RX27|A9RX27_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.5  
tr|A9SZB1|A9SZB1_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.9  
tr|A9RPH0|A9RPH0_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.9  
tr|A9RPG5|A9RPG5_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.9  
tr|A9S4G1|A9S4G1_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.5  
tr|A9S3Z8|A9S3Z8_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.5  
tr|A9RAS8|A9RAS8_PHYPA Predicted protein OS=Physcomitrella paten...    34   3.2  
tr|A9U3D6|A9U3D6_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A9TXX9|A9TXX9_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A9S1I4|A9S1I4_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.2  

>tr|A9T4A9|A9T4A9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_87896 PE=4 SV=1
          Length = 936

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 16/25 (64%), Positives = 19/25 (76%)
 Frame = -1

Query: 210 IPEDVQVQRGWMSCCGTSMPRKHAQ 136
           IP D QVQRGWM CC TS+P K+ +
Sbjct: 854 IPHDAQVQRGWMLCCNTSIPWKYKE 878


>tr|A9RLC3|A9RLC3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_67663 PE=4 SV=1
          Length = 498

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +3

Query: 159 TCHSMTSTPSEPAHPPVCAN 218
           TC++ TSTPSEP HPP C N
Sbjct: 362 TCYNTTSTPSEPVHPPTCYN 381



 Score = 33.5 bits (75), Expect = 5.5
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 159 TCHSMTSTPSEPAHPP 206
           TC++ TSTPSEP HPP
Sbjct: 378 TCYNTTSTPSEPVHPP 393


>tr|A9RTC4|A9RTC4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_70291 PE=4 SV=1
          Length = 229

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = -3

Query: 244 IVRMLDPTRLAHTGGCAGSEGVDVML 167
           I++ ++  RLAH GGCAG EGVDV L
Sbjct: 204 IMKQIEMVRLAHAGGCAGFEGVDVAL 229


>tr|A9S8W2|A9S8W2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76118 PE=4 SV=1
          Length = 146

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -3

Query: 220 RLAHTGGCAGSEGVDVMLWHVYAEK 146
           +L HTGGC GSEG DVM +  Y E+
Sbjct: 46  KLVHTGGCTGSEGEDVMFYLEYWEQ 70


>tr|A9S8W1|A9S8W1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_76117 PE=4 SV=1
          Length = 420

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -3

Query: 220 RLAHTGGCAGSEGVDVMLWHVYAEK 146
           +L HTGGC GSEG DVM +  Y E+
Sbjct: 324 KLVHTGGCTGSEGEDVMFYLEYWEQ 348


>tr|A9TRB3|A9TRB3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_96127 PE=4 SV=1
          Length = 581

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -3

Query: 220 RLAHTGGCAGSEGVDVML 167
           +L HTGGC GSEGVDV+L
Sbjct: 564 KLVHTGGCTGSEGVDVVL 581


>tr|A9RX27|A9RX27_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71670 PE=4 SV=1
          Length = 728

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -3

Query: 220 RLAHTGGCAGSEGVDVML 167
           +L HTGGC GSEGVDV+L
Sbjct: 711 KLVHTGGCTGSEGVDVVL 728


>tr|A9SZB1|A9SZB1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_86028 PE=4 SV=1
          Length = 227

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -3

Query: 220 RLAHTGGCAGSEGVDVMLWHVYAEK 146
           +L HTGGC GSE VDVM +  Y E+
Sbjct: 119 KLVHTGGCTGSEEVDVMFYLEYWEQ 143


>tr|A9RPH0|A9RPH0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68784 PE=4 SV=1
          Length = 205

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 220 RLAHTGGCAGSEGVDVMLWHVYAE 149
           +L HTGGC GSEG+DV+ +  Y E
Sbjct: 45  KLVHTGGCTGSEGMDVVFYLEYWE 68


>tr|A9RPG5|A9RPG5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_68787 PE=4 SV=1
          Length = 179

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -3

Query: 220 RLAHTGGCAGSEGVDVMLWHVYAE 149
           +L HTGGC GSEG+DV+ +  Y E
Sbjct: 46  KLVHTGGCTGSEGMDVVFYLEYWE 69