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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917359
Clone id YMU001_000099_G11
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000099_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGCAGCAATGCTAGAGCGCTCAGCAGACTAGTAGCAAACCTCGACACAACCAGGCTGGC
CGCCAACCTCCGACTACAAGCTCCCTTGTGCATCTCATCATCGAACCCGACCAGTGGCGG
TGAGATGAGGAGTCTGACAAAGACGACCACCTGGTGGGCCCCACATCCGGAAACTGGCAT
CTGGGCGCCCGAAGGCGACCTCTTTGCCAGTGTTTCTTCTTCTTCCCCTCTTCTCGACAA
AACAAAGGCCTGGTTTCGCGATGGTGTCCATGCAGACTAATCTCAACAACCGCACGGCAT
GCAACATGTGACTCTGCGCAAGTGCTGTGCATGCCAAACAATCCATGGCAGTCTAGCCAT
GTATATACTAAGTGTTACTGCTTTTCTGCCTTCTGTAAACCCTTCATCAAAGTGCCATTC
ACGAAGAATGCCCTCATGCTGTTGTCACTTGGCGGTGTAGCCATCATCTCAACAAATTTT
CGATAGCTTCTTTCTGATACGAACCACGTTCGTATTTGCATCATAACAACAATTATCGCA
AATTGTCT
■■Homology search results ■■ -
sp_hit_id Q8IX90
Definition sp|Q8IX90|CM003_HUMAN Uncharacterized protein C13orf3 OS=Homo sapiens
Align length 52
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917359|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_G11.
         (548 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8IX90|CM003_HUMAN Uncharacterized protein C13orf3 OS=Homo sa...    32   2.6  
sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplastic OS...    31   3.4  
sp|P30155|RK27_TOBAC 50S ribosomal protein L27, chloroplastic OS...    30   5.9  

>sp|Q8IX90|CM003_HUMAN Uncharacterized protein C13orf3 OS=Homo
           sapiens GN=C13orf3 PE=1 SV=2
          Length = 412

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +1

Query: 349 QSSHVYTKCYCFSAFCKPFIKVPFTKNALMLLSLGGVAIISTNFR*LLSDTN 504
           +S   YT       FC P +K+P TKN+        +A++STN+   LS TN
Sbjct: 275 KSDAEYTNSPLVPTFCTPGLKIPSTKNS--------IALVSTNYP--LSKTN 316


>sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplastic
           OS=Arabidopsis thaliana GN=RPL27 PE=1 SV=1
          Length = 198

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 268 DTIAKPGLCFVEKRGRRRNTGKEVAFGRPDASFRM 164
           D +AKPG   V +RG + + GK V  G+    F +
Sbjct: 85  DQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSL 119


>sp|P30155|RK27_TOBAC 50S ribosomal protein L27, chloroplastic
           OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1
          Length = 179

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 268 DTIAKPGLCFVEKRGRRRNTGKEVAFGRPDASFRM 164
           D +AKPG   V +RG + + GK V  G+    F +
Sbjct: 78  DQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSL 112
tr_hit_id A9NLF9
Definition tr|A9NLF9|A9NLF9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 47
Score (bit) 37.4
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917359|Adiantum capillus-veneris mRNA, clone:
YMU001_000099_G11.
         (548 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NLF9|A9NLF9_PICSI Putative uncharacterized protein OS=Picea...    37   0.52 
tr|A3A8N5|A3A8N5_ORYSJ Putative uncharacterized protein OS=Oryza...    36   1.5  
tr|A9SBR0|A9SBR0_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.6  
tr|A9P9U6|A9P9U6_POPTR Putative uncharacterized protein OS=Popul...    35   2.6  
tr|A6XHF7|A6XHF7_TRIRU Carboxypeptidase 2 OS=Trichophyton rubrum...    35   2.6  
tr|A3VY83|A3VY83_9RHOB Peptidoglycan binding domain protein OS=R...    35   3.4  
tr|Q175C0|Q175C0_AEDAE Putative uncharacterized protein OS=Aedes...    35   3.4  
tr|Q30XI7|Q30XI7_DESDG Methyl-accepting chemotaxis sensory trans...    33   7.5  
tr|Q16YE7|Q16YE7_AEDAE Low-density lipoprotein receptor (Ldl) OS...    33   7.5  
tr|A7T461|A7T461_NEMVE Predicted protein OS=Nematostella vectens...    33   7.5  

>tr|A9NLF9|A9NLF9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 113

 Score = 37.4 bits (85), Expect = 0.52
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +2

Query: 140 KTTTWWAPHPETGIWAPE-------GDLFASVSSSSPLLDKTKAWFR 259
           K+  WW PHP+TG++ P        GD   S  +S   + + +AWFR
Sbjct: 56  KSEKWWLPHPKTGVFGPAEEQGWAGGDRHHSRENSDESVLEQQAWFR 102


>tr|A3A8N5|A3A8N5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007157 PE=4 SV=1
          Length = 138

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 258 RNQAFVLSRRGEEEETLAKRSPSGAQMPVSGCGAHQVVVFVRLLISPPLVGFDDEMHKG 82
           R  + VL+      E + +++P G  +P++G     VVVF+R L +  +  F   M KG
Sbjct: 28  RAHSSVLASASPVLERMIEQAPRGGVVPIAGASTGAVVVFLRFLYAASVSNFKTNMEKG 86


>tr|A9SBR0|A9SBR0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_77207 PE=4 SV=1
          Length = 294

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +2

Query: 137 TKTTTWWAPHPETGIWAPEG 196
           TK   WW P P TG W PEG
Sbjct: 225 TKQVKWWRPDPVTGAWVPEG 244


>tr|A9P9U6|A9P9U6_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 127

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
 Frame = +2

Query: 137 TKTTTWWAPHPETGIWAPEGDLFASVSS----------SSPLLDKTKAWFRDGVHAD*SQ 286
           T++  +WAPHP TG++ P  +   S  S            P+L++ KAWFR     D  +
Sbjct: 64  TQSDKYWAPHPRTGVFGPATEQHLSEISGDSASVGDGGQDPVLEE-KAWFRPTSLED-LE 121

Query: 287 QPH 295
           +PH
Sbjct: 122 KPH 124


>tr|A6XHF7|A6XHF7_TRIRU Carboxypeptidase 2 OS=Trichophyton rubrum
           GN=CARB2 PE=2 SV=1
          Length = 538

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = +2

Query: 110 TSGGEMRSLTKTTTWWAPHPETGIWAPEGD----LFASVSSSS---PLLDKTKAWFRDGV 268
           T  G MR L ++ +W A H E G  + EG     ++ S SSSS   P   K + W + GV
Sbjct: 77  TMEGFMRRLARSNSWMAYH-EAGFKSEEGRKFPYMYLSASSSSVENPSSRKLRVWLQGGV 135

Query: 269 HAD*SQQPHGMQ 304
           H +   +P G Q
Sbjct: 136 HGN---EPAGDQ 144


>tr|A3VY83|A3VY83_9RHOB Peptidoglycan binding domain protein
           OS=Roseovarius sp. 217 GN=ROS217_22842 PE=4 SV=1
          Length = 582

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 167 PETGIWAPEGDLFASVSSSSPLLDKTKAWFRDG 265
           PETG+ + EGD F  +   +  + +T+ W RDG
Sbjct: 295 PETGLRSLEGDSFTLIGEGTQKISQTRVWLRDG 327


>tr|Q175C0|Q175C0_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL006716 PE=4 SV=1
          Length = 145

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = +2

Query: 44  DTTRLAANLRLQAPLCISSSNPTSGGEMRSLTKTTTWWAPHPETGIWAPEGDLFASVSSS 223
           D  RL+ + R+Q+PLC S + P+S G+ + LT +      HP T +  P    F++  SS
Sbjct: 43  DPDRLSTSERIQSPLCHSVA-PSSAGQTKVLTISP---RVHPATTLLGPLNSPFSAWDSS 98

Query: 224 SPL 232
           S L
Sbjct: 99  SGL 101


>tr|Q30XI7|Q30XI7_DESDG Methyl-accepting chemotaxis sensory
           transducer OS=Desulfovibrio desulfuricans (strain G20)
           GN=Dde_2814 PE=3 SV=1
          Length = 722

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = +2

Query: 2   SSNARALSRLVANLDTTRLAANLRLQAPLCISSSNPT------SGGEMRSLTKTTTWWAP 163
           +++ + L R V+  +TT  A + R QAPL +  S P+      S   +  L +T T W+ 
Sbjct: 70  TASEKLLRRAVSAFETTHNALSGRGQAPLSLEPSGPSATLGQPSAATLALLRRTDTLWSQ 129

Query: 164 HPETGIWAPEGD 199
           H +    A +GD
Sbjct: 130 HKKLVERALKGD 141


>tr|Q16YE7|Q16YE7_AEDAE Low-density lipoprotein receptor (Ldl)
           OS=Aedes aegypti GN=AAEL008564 PE=4 SV=1
          Length = 664

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
 Frame = +1

Query: 169 GNWHLGARRRPLCQCFFFFPSSRQNKGLVSRWC----PCRLISTTARHATCDS--AQVLC 330
           G   +GA  RP+C+C   F   R ++ +   +C     C L +T  R  TC    +   C
Sbjct: 378 GECVVGADSRPMCKCHAEFEGERCDRNICDGYCLNNGRCALSATGQRSCTCSKNFSGARC 437

Query: 331 MPNNPWQSSHVYTKCYCFSAFCKPFIKVPFTK 426
                   + + T  YC++  C    +VP  K
Sbjct: 438 -------ETAICTSDYCYNGECFVENEVPECK 462


>tr|A7T461|A7T461_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g222072 PE=4 SV=1
          Length = 291

 Score = 33.5 bits (75), Expect = 7.5
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = -3

Query: 426 LREWHFDEGFTEGRKAVTLS---IYMARLPWIVWHAQHLRRV 310
           LREWH D+GFTE R AV LS   ++ A LP +V +   + R+
Sbjct: 104 LREWH-DQGFTELRMAVNLSTVQLHHAELPRVVNNLMQVYRL 144