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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917373
Clone id YMU001_000100_A08
Library
Length 270
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AATGGTCTATGTGTTGGAGACATGGAAGCTGGAGAAATCTCTGCAGGGCCTACTCTCGAA
CCCCCTTTGGTGGAGGTACCAAAGATATGCATGTTCAAAAACAATCTATAGGATGTGCAT
CAAGTGGATGTAGTAGACATGGCGAGTCTGGACCTGCTGTTGGTGGCAAAGAGGGTGCAG
TAAAACATGTTGGAGTGTTGTCTTCTCATGGAATGTGGTTCTTGCCATACAGGATTGTTG
ATGATATCCCTTTTATTCGCGGCCGCGAAT
■■Homology search results ■■ -
sp_hit_id O95409
Definition sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens
Align length 62
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917373|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_A08.
         (252 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens G...    29   6.3  
sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2      29   6.3  
sp|P41246|MMP9_RABIT Matrix metalloproteinase-9 OS=Oryctolagus c...    29   6.3  
sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus G...    29   8.3  
sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 O...    29   8.3  
sp|Q5T871|LELP1_HUMAN Late cornified envelope-like proline-rich ...    29   8.3  
sp|Q95K21|FA71A_MACFA Protein FAM71A OS=Macaca fascicularis GN=F...    29   8.3  

>sp|O95409|ZIC2_HUMAN Zinc finger protein ZIC 2 OS=Homo sapiens
           GN=ZIC2 PE=1 SV=2
          Length = 532

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
 Frame = +3

Query: 48  AYSRTPFGGGTKDMHVQKQSIGCASSGCSRHGESGPAVGG-------KEGAVKHVGVLSS 206
           +YS  PF   T+D   + +  G ++ G  +HG  GP  GG        +G +   G+   
Sbjct: 107 SYSGPPFNS-TRDFLFRSRGFGDSAPGGGQHGLFGPGAGGLHHAHSDAQGHLLFPGLPEQ 165

Query: 207 HG 212
           HG
Sbjct: 166 HG 167


>sp|Q7Z5P9|MUC19_HUMAN Mucin-19 OS=Homo sapiens GN=MUC19 PE=1 SV=2
          Length = 6254

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 120  SSGCSRHGESGPAVGGKEGAVKHVGVLSSHGM 215
            SS  S+ G +GP+VGGK GA       SS GM
Sbjct: 1218 SSESSKSGTTGPSVGGKTGATSSEAT-SSEGM 1248


>sp|P41246|MMP9_RABIT Matrix metalloproteinase-9 OS=Oryctolagus
           cuniculus GN=MMP9 PE=2 SV=1
          Length = 707

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 232 LYGKNHIP*EDNTPTCFTAPSLPPTAGPDSPCLLHPLDAHP 110
           LYG N  P    T T    P+ PPTA P  P  + P + HP
Sbjct: 442 LYGPNPNPQPPATTTPEPQPTAPPTACPTWPATVRPSE-HP 481


>sp|Q62520|ZIC2_MOUSE Zinc finger protein ZIC 2 OS=Mus musculus
           GN=Zic2 PE=1 SV=2
          Length = 530

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 48  AYSRTPFGGGTKDMHVQKQSIGCASSGCSRHGESGPAVGG 167
           +YS  PF   T+D   + +  G ++ G  +HG  GP  GG
Sbjct: 107 SYSGPPFNS-TRDFLFRSRGFGDSAPGGGQHGLFGPGAGG 145


>sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 OS=Mus
            musculus GN=Notch4 PE=1 SV=2
          Length = 1964

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 193  PTCFTAPSLPPTAGPDSPCL 134
            P C T P+ PP  GP SPCL
Sbjct: 1119 PDCLTPPA-PPGCGPPSPCL 1137


>sp|Q5T871|LELP1_HUMAN Late cornified envelope-like proline-rich
           protein 1 OS=Homo sapiens GN=LELP1 PE=2 SV=1
          Length = 98

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -3

Query: 193 PTCFTAPSLPPTAGPDSPCLLHPLDAHPIDCF*TCISLVPPPK 65
           P C   PS  P++ P  PC        P  C   C    PPP+
Sbjct: 56  PKCLPCPSQSPSSCPPQPCTKPCPPKCPSSCPHACPPPCPPPE 98


>sp|Q95K21|FA71A_MACFA Protein FAM71A OS=Macaca fascicularis
           GN=FAM71A PE=2 SV=1
          Length = 594

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = +3

Query: 99  KQSIGCASSGCSRHGESGPAVG----GKEGAVKHVGVLSS 206
           K+  GC+S G SRHGES   V      KE    H    SS
Sbjct: 473 KKEKGCSSPGSSRHGESHKGVSHTPISKESRTSHKSGRSS 512
tr_hit_id B7SWG9
Definition tr|B7SWG9|B7SWG9_9HIV1 Nef protein OS=Human immunodeficiency virus 1
Align length 28
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917373|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_A08.
         (252 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7SWG9|B7SWG9_9HIV1 Nef protein OS=Human immunodeficiency vir...    34   4.2  
tr|Q4T3C8|Q4T3C8_TETNG Chromosome undetermined SCAF10100, whole ...    34   4.2  
tr|B6U9B6|B6U9B6_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1      33   5.5  
tr|B6T9Q8|B6T9Q8_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1      33   5.5  
tr|B4FJU3|B4FJU3_MAIZE Putative uncharacterized protein OS=Zea m...    33   5.5  
tr|Q2MEW7|Q2MEW7_STRHI Putative hexosamine-6-dehydrogenase OS=St...    33   9.4  

>tr|B7SWG9|B7SWG9_9HIV1 Nef protein OS=Human immunodeficiency virus
           1 GN=nef PE=4 SV=1
          Length = 201

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 187 CFTAPSLPPTAGPDSPCLLHPLDAHPID 104
           CF    + P AG ++ CLLHP++ H ID
Sbjct: 142 CFKLVPVEPEAGGETACLLHPINQHGID 169


>tr|Q4T3C8|Q4T3C8_TETNG Chromosome undetermined SCAF10100, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00007907001 PE=4 SV=1
          Length = 1239

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 190 TCFTAPSLPPTAGPDSPCLLHPLDAHPIDCF*TCI-SLVPPP 68
           +C ++P  PP   P    LL PL   P+ C  +C  S VPPP
Sbjct: 216 SCLSSPVSPPPVSPPLFLLLFPLLLSPLPCVSSCFPSSVPPP 257


>tr|B6U9B6|B6U9B6_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1
          Length = 94

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 72  GGTKDMHVQKQSIGCASSGCS-----RHGESGPAVGGKEGAVKHVGVLSSHGMWFL 224
           GG KD + QK+  G A +  S     RH   G +VG  + A      L SHG W L
Sbjct: 4   GGVKDFYRQKKKGGVAKTASSSKNKTRHYTGGASVGASDAA--QTSALVSHGSWDL 57


>tr|B6T9Q8|B6T9Q8_MAIZE Delta DNA polymerase OS=Zea mays PE=4 SV=1
          Length = 117

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 72  GGTKDMHVQKQSIGCASSGCS-----RHGESGPAVGGKEGAVKHVGVLSSHGMWFL 224
           GG KD + QK+  G A +  S     RH   G +VG  + A      L SHG W L
Sbjct: 4   GGVKDFYRQKKKGGVAKTASSSKNKTRHYTGGASVGASDAA--QTSALVSHGSWDL 57


>tr|B4FJU3|B4FJU3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 72  GGTKDMHVQKQSIGCASSGCS-----RHGESGPAVGGKEGAVKHVGVLSSHGMWFL 224
           GG KD + QK+  G A +  S     RH   G +VG  + A      L SHG W L
Sbjct: 4   GGVKDFYRQKKKGGVAKTASSSKNKTRHYTGGASVGASDAA--QTSALVSHGSWDL 57


>tr|Q2MEW7|Q2MEW7_STRHI Putative hexosamine-6-dehydrogenase
           OS=Streptoalloteichus hindustanus GN=aprQ PE=4 SV=1
          Length = 503

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 3   WSMCWRHGSWRNLCRAYSRTPFGGGT 80
           W+  WRHG W      +S   FGGGT
Sbjct: 63  WAYAWRHGRWWTTGYPWSAQAFGGGT 88