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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917375
Clone id YMU001_000100_A10
Library
Length 459
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCAGTGTCAGTTATCAGGACATACAGTACCTAATATACAAGCCATATGAGCAGGCCATT
ACAACGAGGGCAAAGTATTCGCAGTCTCTGCATTCGGTTCCCACACCCATTTTTGCGAAA
AAGGTTATCGATGCAGTGCTTAGGAAGAATCCCCCTCGTTGCTTCAGCTATGGTTACCTC
TCAGGAACATACTCTTTCTTGTATTATATGCCCCTTTGGGTGAGGGACTGGTTTTTTTCC
CGTAAAGCGGGTCTTGCAAAACCAGTTGAGACTGAAAAGATGGGAACTTGATGGTTATGT
GGGTAGAAACAGCAAGCAATACTGTAAAAAAGAAGATAACTATGCCATTATTATGGCTTC
TTTCGGGGAAAGTCTATGGGACCCAAATTATGAACAGGTTGGATCATGATTCCCATGTTT
CATTGCAGCGCTTGCAAGCGACTTAGGTCACAAATCAAA
■■Homology search results ■■ -
sp_hit_id A1VBE9
Definition sp|A1VBE9|MURC_DESVV UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Align length 23
Score (bit) 30.0
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917375|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_A10.
         (459 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1VBE9|MURC_DESVV UDP-N-acetylmuramate--L-alanine ligase OS=D...    30   5.0  
sp|P61678|MURC_DESVH UDP-N-acetylmuramate--L-alanine ligase OS=D...    30   5.0  

>sp|A1VBE9|MURC_DESVV UDP-N-acetylmuramate--L-alanine ligase
           OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
           GN=murC PE=3 SV=1
          Length = 454

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 153 GILPKHCIDNLFRKNGCGNRMQR 85
           GI P+HCI+ L R  G G R +R
Sbjct: 292 GISPEHCIEGLARFGGVGRRFER 314


>sp|P61678|MURC_DESVH UDP-N-acetylmuramate--L-alanine ligase
           OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
           29579 / NCIMB 8303) GN=murC PE=3 SV=1
          Length = 454

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 153 GILPKHCIDNLFRKNGCGNRMQR 85
           GI P+HCI+ L R  G G R +R
Sbjct: 292 GISPEHCIEGLARFGGVGRRFER 314
tr_hit_id A9RV90
Definition tr|A9RV90|A9RV90_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 71
Score (bit) 82.0
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917375|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_A10.
         (459 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RV90|A9RV90_PHYPA Predicted protein OS=Physcomitrella paten...    82   1e-14
tr|A9SUI5|A9SUI5_PHYPA Predicted protein OS=Physcomitrella paten...    80   7e-14
tr|A7PL44|A7PL44_VITVI Chromosome chr7 scaffold_20, whole genome...    73   8e-12
tr|Q9LX23|Q9LX23_ARATH Putative uncharacterized protein T31P16_4...    72   2e-11
tr|Q147P9|Q147P9_ARATH At5g10050 OS=Arabidopsis thaliana PE=2 SV=1     72   2e-11
tr|Q8GW65|Q8GW65_ARATH Putative uncharacterized protein At5g1005...    71   3e-11
tr|Q7XV10|Q7XV10_ORYSJ Os04g0457200 protein OS=Oryza sativa subs...    70   5e-11
tr|Q01JQ2|Q01JQ2_ORYSA H0523F07.11 protein OS=Oryza sativa GN=H0...    70   5e-11
tr|A3AUG4|A3AUG4_ORYSJ Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|Q4AC19|Q4AC19_BRACM 117M18_6 OS=Brassica campestris GN=117M18...    70   7e-11
tr|B7U9T7|B7U9T7_CARAS AT5G10050-like protein OS=Cardaminopsis a...    70   7e-11
tr|B8AUP3|B8AUP3_ORYSI Putative uncharacterized protein OS=Oryza...    69   2e-10
tr|Q944R2|Q944R2_ARATH AT5g10050/T31P16_40 OS=Arabidopsis thalia...    67   3e-10
tr|Q8GYK9|Q8GYK9_ARATH Putative uncharacterized protein At5g6520...    67   3e-10
tr|B4FAP3|B4FAP3_MAIZE Putative uncharacterized protein OS=Zea m...    67   4e-10
tr|A7R1I3|A7R1I3_VITVI Chromosome undetermined scaffold_358, who...    66   1e-09
tr|A5B2G8|A5B2G8_VITVI Putative uncharacterized protein OS=Vitis...    65   1e-09
tr|A3B9C6|A3B9C6_ORYSJ Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|A2ZN30|A2ZN30_ORYSI Putative uncharacterized protein OS=Oryza...    53   9e-06
tr|Q9FJP5|Q9FJP5_ARATH Similarity to dehydrogenase OS=Arabidopsi...    52   2e-05
tr|A8JGV4|A8JGV4_CHLRE Predicted protein OS=Chlamydomonas reinha...    47   5e-04
tr|Q4P1X0|Q4P1X0_USTMA Putative uncharacterized protein OS=Ustil...    44   0.005
tr|B0CR92|B0CR92_LACBS Oxidoreductase OS=Laccaria bicolor (strai...    41   0.034
tr|Q6FSQ4|Q6FSQ4_CANGA Strain CBS138 chromosome G complete seque...    40   0.044
tr|B8PAI6|B8PAI6_9APHY Predicted protein OS=Postia placenta Mad-...    35   1.9  
tr|A6SIF6|A6SIF6_BOTFB Putative uncharacterized protein OS=Botry...    35   2.4  
tr|B7RYP5|B7RYP5_9GAMM NAD dependent epimerase/dehydratase famil...    34   4.1  
tr|A4R9B7|A4R9B7_MAGGR Putative uncharacterized protein OS=Magna...    34   4.1  
tr|A7EG76|A7EG76_SCLS1 Putative uncharacterized protein OS=Scler...    33   5.4  
tr|Q7SHI2|Q7SHI2_NEUCR Predicted protein OS=Neurospora crassa GN...    33   7.0  

>tr|A9RV90|A9RV90_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_178437 PE=3 SV=1
          Length = 291

 Score = 82.0 bits (201), Expect = 1e-14
 Identities = 33/71 (46%), Positives = 48/71 (67%)
 Frame = +1

Query: 34  IYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSGTYSFLYYMP 213
           I+KPYE+ +  RA  S    S P P+FAKK ++A++ K+   C++YG+LS  Y  L+Y P
Sbjct: 211 IFKPYEEYLLQRAMLSHHPKSTPAPLFAKKAVNAIVAKSSTACYTYGFLSRIYRILFYCP 270

Query: 214 LWVRDWFFSRK 246
            W+RDW+FS K
Sbjct: 271 YWIRDWWFSSK 281


>tr|A9SUI5|A9SUI5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_188544 PE=3 SV=1
          Length = 287

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 33/71 (46%), Positives = 45/71 (63%)
 Frame = +1

Query: 34  IYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSGTYSFLYYMP 213
           I+KPYE  +  R K +    S P P+FAKK   A+L +  P C++YGYLS  Y  LYY P
Sbjct: 211 IFKPYEAYLLERTKLAHHPKSTPAPLFAKKAAAAILARPSPMCYTYGYLSRIYRILYYCP 270

Query: 214 LWVRDWFFSRK 246
            W+R+W+F+ K
Sbjct: 271 YWIRNWWFTSK 281


>tr|A7PL44|A7PL44_VITVI Chromosome chr7 scaffold_20, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00019429001
           PE=3 SV=1
          Length = 277

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 32/69 (46%), Positives = 47/69 (68%)
 Frame = +1

Query: 25  QYLIYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSGTYSFLY 204
           ++ +YKP+E AI  R  +SQ   S P+  FAKK + AVL KNPP  FSYG+ S   + +Y
Sbjct: 201 EWKLYKPFEAAIRERTNFSQGPKSTPSEEFAKKTVAAVLNKNPPAWFSYGHYSTIMAIMY 260

Query: 205 YMPLWVRDW 231
           ++PL++RD+
Sbjct: 261 HLPLFIRDF 269


>tr|Q9LX23|Q9LX23_ARATH Putative uncharacterized protein T31P16_40
           OS=Arabidopsis thaliana GN=T31P16_40 PE=3 SV=1
          Length = 299

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 32/67 (47%), Positives = 45/67 (67%)
 Frame = +1

Query: 34  IYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSGTYSFLYYMP 213
           +YKPYE+AI  RA  SQ ++  P   FA+  + AVL+KNPP  FS G  S   + +Y+MP
Sbjct: 225 LYKPYEEAIRERAFISQRMNPTPAETFARDTVAAVLKKNPPAWFSSGRYSTLMAVMYHMP 284

Query: 214 LWVRDWF 234
           LW++D+F
Sbjct: 285 LWLKDFF 291


>tr|Q147P9|Q147P9_ARATH At5g10050 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 279

 Score = 71.6 bits (174), Expect = 2e-11
 Identities = 32/67 (47%), Positives = 45/67 (67%)
 Frame = +1

Query: 34  IYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSGTYSFLYYMP 213
           +YKPYE+AI  RA  SQ ++  P   FA+  + AVL+KNPP  FS G  S   + +Y+MP
Sbjct: 205 LYKPYEEAIRERAFISQRMNPTPAETFARDTVAAVLKKNPPAWFSSGRYSTLMAVMYHMP 264

Query: 214 LWVRDWF 234
           LW++D+F
Sbjct: 265 LWLKDFF 271


>tr|Q8GW65|Q8GW65_ARATH Putative uncharacterized protein
           At5g10050/T31P16_40 OS=Arabidopsis thaliana
           GN=At5g10050/T31P16_40 PE=2 SV=1
          Length = 279

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 32/67 (47%), Positives = 45/67 (67%)
 Frame = +1

Query: 34  IYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSGTYSFLYYMP 213
           +YKPYE+AI  RA  SQ ++  P   FA+  + AVL+KNPP  FS G  S   + +Y+MP
Sbjct: 205 LYKPYEEAIRERAFISQRMNPTPAETFARDTVAAVLKKNPPAWFSSGRYSTLMAGMYHMP 264

Query: 214 LWVRDWF 234
           LW++D+F
Sbjct: 265 LWLKDFF 271


>tr|Q7XV10|Q7XV10_ORYSJ Os04g0457200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0036B21.7 PE=2 SV=2
          Length = 234

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = +1

Query: 7   VSYQDIQYLIYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSG 186
           V  +D +Y  YK +E+++  R   SQ   S P    AK+V+  VL+KNPP  F+YG  S 
Sbjct: 154 VQIRDWKY--YKKFEESLRARTDASQGPGSTPAEDLAKRVVALVLKKNPPAWFAYGQFSA 211

Query: 187 TYSFLYYMPLWVRDWFF 237
             S LYY PLW RD+F+
Sbjct: 212 ILSLLYYAPLWFRDYFY 228


>tr|Q01JQ2|Q01JQ2_ORYSA H0523F07.11 protein OS=Oryza sativa
           GN=H0523F07.11 PE=3 SV=1
          Length = 295

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = +1

Query: 7   VSYQDIQYLIYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSG 186
           V  +D +Y  YK +E+++  R   SQ   S P    AK+V+  VL+KNPP  F+YG  S 
Sbjct: 215 VQIRDWKY--YKKFEESLRARTDASQGPGSTPAEDLAKRVVALVLKKNPPAWFAYGQFSA 272

Query: 187 TYSFLYYMPLWVRDWFF 237
             S LYY PLW RD+F+
Sbjct: 273 ILSLLYYAPLWFRDYFY 289


>tr|A3AUG4|A3AUG4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_014436 PE=3 SV=1
          Length = 255

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 34/77 (44%), Positives = 46/77 (59%)
 Frame = +1

Query: 7   VSYQDIQYLIYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSG 186
           V  +D +Y  YK +E+++  R   SQ   S P    AK+V+  VL+KNPP  F+YG  S 
Sbjct: 175 VQIRDWKY--YKKFEESLRARTDASQGPGSTPAEDLAKRVVALVLKKNPPAWFAYGQFSA 232

Query: 187 TYSFLYYMPLWVRDWFF 237
             S LYY PLW RD+F+
Sbjct: 233 ILSLLYYAPLWFRDYFY 249


>tr|Q4AC19|Q4AC19_BRACM 117M18_6 OS=Brassica campestris GN=117M18_6
           PE=3 SV=1
          Length = 280

 Score = 69.7 bits (169), Expect = 7e-11
 Identities = 35/76 (46%), Positives = 47/76 (61%)
 Frame = +1

Query: 34  IYKPYEQAITTRAKYSQSLHSVPTPIFAKKVIDAVLRKNPPRCFSYGYLSGTYSFLYYMP 213
           ++KPYE+AI  RA  SQ +   P   FAK  + AVL+KNPP  FS G  S   + +Y+MP
Sbjct: 205 LFKPYEEAIRERAFISQRMKPTPAETFAKDTVAAVLKKNPPAWFSSGRYSTLMAIMYHMP 264

Query: 214 LWVRDWFFSRKAGLAK 261
           LW +D F  +KA + K
Sbjct: 265 LWFKD-FVQKKALMKK 279