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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917380
Clone id YMU001_000100_B03
Library
Length 524
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_B03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGAGAGAGAGAGAGACGAGACAAGAGACACACCATATACTCTCCCAAAGACTGATTCAT
ATTGAGGACAAGATACAAATTTATAGGTGAGACCAAGTTGAGTAGAGTGAGCCATATATA
GCTCCAACACCCCCACTCAAACAAAGGTCTCTAGGCTTTGGATGAAAAACCCCTTGGGGA
GTTCAAGGGAAAAACCCAAGCCCCTATACAATGTGAAAATATGAACCAACGATGATGATG
TGAAAGTGAATTGTGCATCTATGTACAAATATTCAAGTGACTTAGAGATCACAATGTGCA
AATGTGGAGTGTGCATAGTGCATGCTACCTAAAAGATTACAATGTCATATGTACAAAGCT
ATTACAATAGCAAAGAAGCTAATCTAGAAAGAGTGAGGTCGAAGAAACTCCAAGCTCCGA
GCGCAAGAGGATGAAACGTGACTCGTTGAGGCCTTTGGTCAAAATGTCTGCAATCATCTG
GTCACTTGGACAGTGTTCAACCATAATGGTTCCTTTGCGTACTT
■■Homology search results ■■ -
sp_hit_id P04146
Definition sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
Align length 39
Score (bit) 36.6
E-value 0.074
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917380|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B03.
         (524 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    37   0.074
sp|Q66HE2|MOT13_RAT Monocarboxylate transporter 13 OS=Rattus nor...    33   1.1  
sp|Q17QR6|MOT13_BOVIN Monocarboxylate transporter 13 OS=Bos taur...    32   1.8  
sp|Q8CE94|MOT13_MOUSE Monocarboxylate transporter 13 OS=Mus musc...    32   2.4  
sp|Q46IX0|RNH2_PROMT Ribonuclease HII OS=Prochlorococcus marinus...    30   7.0  

>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 36.6 bits (83), Expect = 0.074
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGV 406
            V+   I +E+ P++  +ADI TK L  +RF+ LR +LG+
Sbjct: 1362 VQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400


>sp|Q66HE2|MOT13_RAT Monocarboxylate transporter 13 OS=Rattus
           norvegicus GN=Slc16a13 PE=2 SV=1
          Length = 428

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 171 GFSSKA*RPLFEWGCWSYIWLTLLNLVSPINLYLV 67
           G SS A  PLF+W   +Y W   L LVS ++L+LV
Sbjct: 149 GISSFAFAPLFQWLLNNYAWRGALLLVSALSLHLV 183


>sp|Q17QR6|MOT13_BOVIN Monocarboxylate transporter 13 OS=Bos taurus
           GN=SLC16A13 PE=2 SV=1
          Length = 426

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -3

Query: 171 GFSSKA*RPLFEWGCWSYIWLTLLNLVSPINLYLV 67
           G SS A  PLF+W    Y W   L LVS ++L+LV
Sbjct: 149 GLSSFAFAPLFQWLLNHYAWRGALLLVSALSLHLV 183


>sp|Q8CE94|MOT13_MOUSE Monocarboxylate transporter 13 OS=Mus
           musculus GN=Slc16a13 PE=2 SV=1
          Length = 428

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 171 GFSSKA*RPLFEWGCWSYIWLTLLNLVSPINLYLV 67
           G SS A  PLF+W   +Y W   L LVS ++L+L+
Sbjct: 149 GISSFAFAPLFQWLINNYAWRGALLLVSALSLHLM 183


>sp|Q46IX0|RNH2_PROMT Ribonuclease HII OS=Prochlorococcus marinus
           (strain NATL2A) GN=rnhB PE=3 SV=1
          Length = 195

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = +2

Query: 383 SRKSEVEET-----PSSERKRMKRDSLRPLVKMSAIIWSLGQCS 499
           S+K+E+E        S +  + +R +L PL+K ++I W++GQ S
Sbjct: 31  SKKNEIELLNQGLKDSKKLSQRQRHNLVPLIKTNSIAWTIGQAS 74
tr_hit_id Q8H7T1
Definition tr|Q8H7T1|Q8H7T1_ORYSJ Putative Zea mays retrotransposon Opie-2 OS=Oryza sativa subsp. japonica
Align length 44
Score (bit) 47.0
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917380|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B03.
         (524 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8H7T1|Q8H7T1_ORYSJ Putative Zea mays retrotransposon Opie-2 ...    47   6e-04
tr|Q852C7|Q852C7_ORYSJ Putative gag-pol polyprotein (Retrotransp...    47   6e-04
tr|Q7XPI7|Q7XPI7_ORYSA OSJNBb0004A17.2 protein OS=Oryza sativa G...    47   6e-04
tr|Q10SZ0|Q10SZ0_ORYSJ Retrotransposon protein, putative, unclas...    47   6e-04
tr|Q10PG0|Q10PG0_ORYSJ Retrotransposon protein, putative, unclas...    47   6e-04
tr|Q5KQE8|Q5KQE8_ORYSJ Putative polyprotein OS=Oryza sativa subs...    46   0.001
tr|A5BVE5|A5BVE5_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|A5BTR7|A5BTR7_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|A5B676|A5B676_VITVI Putative uncharacterized protein OS=Vitis...    46   0.001
tr|A5AUX8|A5AUX8_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A5CBM6|A5CBM6_VITVI Putative uncharacterized protein OS=Vitis...    44   0.006
tr|Q8WRX5|Q8WRX5_ANOGA Pol polyprotein (Fragment) OS=Anopheles g...    43   0.008
tr|B3N051|B3N051_DROAN GF19027 OS=Drosophila ananassae GN=GF1902...    42   0.014
tr|O22452|O22452_VOLCA Protease/reverse transcriptase OS=Volvox ...    42   0.019
tr|A2Q1C9|A2Q1C9_MEDTR Polynucleotidyl transferase, Ribonuclease...    42   0.019
tr|Q9ZQE9|Q9ZQE9_ARATH Putative retroelement pol polyprotein OS=...    41   0.032
tr|A5BRC3|A5BRC3_VITVI Putative uncharacterized protein OS=Vitis...    41   0.032
tr|A5ACV8|A5ACV8_VITVI Putative uncharacterized protein OS=Vitis...    41   0.032
tr|A5BR97|A5BR97_VITVI Putative uncharacterized protein OS=Vitis...    41   0.041
tr|A5BPR9|A5BPR9_VITVI Putative uncharacterized protein OS=Vitis...    41   0.041
tr|Q7XWL7|Q7XWL7_ORYSJ OSJNBb0052B05.12 protein OS=Oryza sativa ...    40   0.054
tr|A5CA01|A5CA01_VITVI Putative uncharacterized protein OS=Vitis...    40   0.054
tr|Q2QSC1|Q2QSC1_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.071
tr|B6REL8|B6REL8_9BRAS Integrase OS=Boechera divaricarpa GN=TnIn...    40   0.071
tr|A5C2Z9|A5C2Z9_VITVI Putative uncharacterized protein OS=Vitis...    40   0.071
tr|A5BPJ0|A5BPJ0_VITVI Putative uncharacterized protein OS=Vitis...    40   0.071
tr|A5B4A3|A5B4A3_VITVI Putative uncharacterized protein OS=Vitis...    40   0.071
tr|Q8LMY8|Q8LMY8_ORYSJ Putative polyprotein OS=Oryza sativa subs...    40   0.092
tr|Q6L3Y5|Q6L3Y5_SOLDE Gag-pol polyprotein, putative OS=Solanum ...    40   0.092
tr|A5BLI2|A5BLI2_VITVI Putative uncharacterized protein OS=Vitis...    39   0.12 

>tr|Q8H7T1|Q8H7T1_ORYSJ Putative Zea mays retrotransposon Opie-2
            OS=Oryza sativa subsp. japonica GN=OSJNBa0009C08.22 PE=4
            SV=1
          Length = 2145

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSL 391
            V KGTI++E   S++ +ADI TK L+ SRF  LRSELGV    L
Sbjct: 1750 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGVIGVDL 1793


>tr|Q852C7|Q852C7_ORYSJ Putative gag-pol polyprotein (Retrotransposon
            protein, putative, unclassified) OS=Oryza sativa subsp.
            japonica GN=OSJNBb0096M04.110 PE=4 SV=1
          Length = 1969

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSL 391
            V KGTI++E   S++ +ADI TK L+ SRF  LRSELGV    L
Sbjct: 1750 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGVIGVDL 1793


>tr|Q7XPI7|Q7XPI7_ORYSA OSJNBb0004A17.2 protein OS=Oryza sativa
            GN=OSJNBb0004A17.2 PE=4 SV=2
          Length = 2256

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSL 391
            V KGTI++E   S++ +ADI TK L+ SRF  LRSELGV    L
Sbjct: 1729 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGVIGVDL 1772


>tr|Q10SZ0|Q10SZ0_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os03g01684 PE=4 SV=1
          Length = 2124

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSL 391
            V KGTI++E   S++ +ADI TK L+ SRF  LRSELGV    L
Sbjct: 1729 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGVIGVDL 1772


>tr|Q10PG0|Q10PG0_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os03g13260 PE=4 SV=1
          Length = 1948

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSL 391
            V KGTI++E   S++ +ADI TK L+ SRF  LRSELGV    L
Sbjct: 1729 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGVIGVDL 1772


>tr|Q5KQE8|Q5KQE8_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
            japonica GN=OSJNBa0049D13.12 PE=4 SV=1
          Length = 1799

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 23/39 (58%), Positives = 29/39 (74%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGV 406
            V KGTI++E   S++ +ADI TK L+ SRF  LRSELGV
Sbjct: 1754 VEKGTIVLEFVESEKQLADIFTKPLDRSRFEFLRSELGV 1792


>tr|A5BVE5|A5BVE5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008493 PE=4 SV=1
          Length = 414

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = -3

Query: 522 VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSLFL 385
           V+KGTI V+H  +   +AD+LTK L+  RF LLRS++GV+  +  L
Sbjct: 351 VKKGTIRVQHIHTIDQLADLLTKSLSRQRFQLLRSKIGVADGTSIL 396


>tr|A5BTR7|A5BTR7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_027449 PE=4 SV=1
          Length = 793

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = -3

Query: 522 VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSLFL 385
           V+KGTI V+H  +   +AD+LTK L+  RF LLRS++GV+  +  L
Sbjct: 243 VKKGTIRVQHIHTIDQLADLLTKSLSRQRFQLLRSKIGVADGTSIL 288


>tr|A5B676|A5B676_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007584 PE=4 SV=1
          Length = 1120

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = -3

Query: 522  VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGVSSTSLFL 385
            V+KGTI V+H  +   +AD+LTK L+  RF LLRS++GV+  +  L
Sbjct: 1057 VKKGTIRVQHIHTIDQLADLLTKSLSRQRFQLLRSKIGVADGTSIL 1102


>tr|A5AUX8|A5AUX8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_015838 PE=4 SV=1
          Length = 1352

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/39 (53%), Positives = 29/39 (74%)
 Frame = -3

Query: 522 VRKGTIMVEHCPSDQMIADILTKGLNESRFILLRSELGV 406
           V+KGTI V+H  +   +AD+LTK L+  RF LLRS++GV
Sbjct: 367 VKKGTIRVQHIHTIDQLADLLTKSLSRQRFQLLRSKIGV 405