NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917382
Clone id YMU001_000100_B05
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTATCATTACACATTCTCCAATTTGGTTAATTGATCCATATCTCTATTCAGTTGCCCTG
AGGTTTCGAATTGTCCACTTGGATACTTCTCCTGGAGCTTTCTCATTGTTAAACTGCATT
GGCCACTTTCCTTCCTAGTGTTCCCTTTTTCAGAGTATCCTTCCTAATTACGATCTTCAT
CTCACATGTGATTAAGTTGCTGTCTATTTGTTAGCCCTTGTGACATAGCCGTATGTGTCT
ACTTTGCCAATGTTTTACAAAACCATCTCTCTCTCCTGGCAGTGAAAGTGATATCATCAT
TGCTTTGCATGCATAAGGCGATGCTGTGTGATATGCAGCCTTTTCTTATCGGATTCTCTT
CACAAGCACTTAATATCAAAATGCAGAGGGGTTTCTTCCTCTCCCCTTCTGCATTTTGCA
GAGTTTGTGTGTGTAATTTAAAGCTATTGGGGCTGAGGAAA
■■Homology search results ■■ -
sp_hit_id P36417
Definition sp|P36417|GBF_DICDI G-box-binding factor OS=Dictyostelium discoideum
Align length 54
Score (bit) 29.3
E-value 8.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917382|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B05.
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36417|GBF_DICDI G-box-binding factor OS=Dictyostelium discoi...    29   8.5  
sp|Q96SL8|FIZ1_HUMAN Flt3-interacting zinc finger protein 1 OS=H...    29   8.5  

>sp|P36417|GBF_DICDI G-box-binding factor OS=Dictyostelium
           discoideum GN=gbfA PE=1 SV=2
          Length = 708

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 355 NPIRKGCISHSIALCMQSNDDITFTARRERWFCKTLAK*THTAMSQGLTNRQQL 194
           N  +K     +I  C + N+  ++   + RW+CK   K    A + G+T  QQ+
Sbjct: 327 NSEKKDSSGQTIPKCTRCNEAASWKHDKRRWWCKECKK----AFTPGITKMQQV 376


>sp|Q96SL8|FIZ1_HUMAN Flt3-interacting zinc finger protein 1 OS=Homo
           sapiens GN=FIZ1 PE=1 SV=1
          Length = 496

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +1

Query: 322 CCVICSLFLSD--SLHKHLISKCRGVSSSPL 408
           CC++C L  S   SL +HL  + RGV  SPL
Sbjct: 108 CCLVCELRFSSRSSLGRHLRRQHRGVLPSPL 138
tr_hit_id A2H7E0
Definition tr|A2H7E0|A2H7E0_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 53
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917382|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B05.
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2H7E0|A2H7E0_TRIVA Putative uncharacterized protein OS=Trich...    35   2.4  
tr|A2EMN1|A2EMN1_TRIVA Beige/BEACH domain containing protein OS=...    33   5.4  
tr|A4HUN5|A4HUN5_LEIIN Putative uncharacterized protein OS=Leish...    33   9.2  
tr|A4H6B1|A4H6B1_LEIBR Putative uncharacterized protein OS=Leish...    33   9.2  

>tr|A2H7E0|A2H7E0_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_290060 PE=4 SV=1
          Length = 239

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
 Frame = +3

Query: 3   YHYTFSNLVN*SI-----SLFSCPEVSNCPLG-------YFSWSFLIVKLHWP 125
           Y Y FSNLV         +L+ CP VS+ P+        YF++S ++   HWP
Sbjct: 144 YMYLFSNLVTLVCFVVIQTLYFCPAVSSTPVAASLNIVLYFTYSIMMTYFHWP 196


>tr|A2EMN1|A2EMN1_TRIVA Beige/BEACH domain containing protein
           OS=Trichomonas vaginalis G3 GN=TVAG_349540 PE=4 SV=1
          Length = 2460

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +3

Query: 207 FVSPCDIAVCVYFANVLQNHLSLLAVKVISSLLCMHKAMLCDMQPFLIGFSSQALNIKMQ 386
           ++S  D  V  +F +++Q     +++  ISSL  +  A +CD  P++   +   + I  +
Sbjct: 240 YLSQLDFVVLSFFGDIVQYLERKISINFISSLALLFWAKICDNDPYVPVPTKSEIQIPYE 299

Query: 387 RGFFLSPS 410
            G F  P+
Sbjct: 300 TGEFSIPN 307


>tr|A4HUN5|A4HUN5_LEIIN Putative uncharacterized protein
           OS=Leishmania infantum GN=LinJ10.1580 PE=4 SV=1
          Length = 306

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/34 (38%), Positives = 26/34 (76%)
 Frame = +3

Query: 261 NHLSLLAVKVISSLLCMHKAMLCDMQPFLIGFSS 362
           +HLSLL+++V+SS+L  H  +  D+Q +++ F++
Sbjct: 143 SHLSLLSLEVLSSVLLAHHYLRKDLQKYMLDFNA 176


>tr|A4H6B1|A4H6B1_LEIBR Putative uncharacterized protein
           OS=Leishmania braziliensis GN=LbrM10_V2.1340 PE=4 SV=1
          Length = 306

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 13/34 (38%), Positives = 26/34 (76%)
 Frame = +3

Query: 261 NHLSLLAVKVISSLLCMHKAMLCDMQPFLIGFSS 362
           +HLSLL+++V+SS+L  H  +  D+Q +++ F++
Sbjct: 143 SHLSLLSLEVLSSVLLAHHYLRKDLQKYMLDFNA 176