BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917383|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B06.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q92AA1|DAPB_LISIN Dihydrodipicolinate reductase OS=Listeria i...    30   5.6  
sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3     30   7.3  
sp|Q9Z7Z5|OMCA_CHLPN Small cysteine-rich outer membrane protein ...    30   7.3  
sp|Q9HF61|BUD3_ASHGO Bud site selection protein 3 homolog OS=Ash...    30   9.5  

>sp|Q92AA1|DAPB_LISIN Dihydrodipicolinate reductase OS=Listeria
           innocua GN=dapB PE=3 SV=1
          Length = 263

 Score = 30.4 bits (67), Expect = 5.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 533 VLDKVVTVISGQTVVTPETVDKLKSIIESEK 441
           +L+  V  + G T  TPE + +LKSI ES+K
Sbjct: 86  ILEHSVRAVVGTTGFTPEQISELKSIAESKK 116


>sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3
          Length = 6885

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -2

Query: 149  SQAMVVELSEAAVAKAARVRDELERIELKASLLDLVYSL 33
            + A  VEL E A ++ A++RDE ER+ L  +LL  VY L
Sbjct: 4675 ADAYTVEL-ENAESRVAKLRDEGERLHLPYALLQEVYKL 4712


>sp|Q9Z7Z5|OMCA_CHLPN Small cysteine-rich outer membrane protein
           omcA OS=Chlamydia pneumoniae GN=omcA PE=2 SV=1
          Length = 90

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 3   PSACSPCQLSQRIDQIQKGSLQLNSLEFVSNPCGLCYC 116
           PS+C+PC++ ++ ++   G+   + +   SNPCG   C
Sbjct: 34  PSSCNPCEVIRKKERSCGGNACGSYVPSCSNPCGSTEC 71


>sp|Q9HF61|BUD3_ASHGO Bud site selection protein 3 homolog OS=Ashbya
           gossypii GN=BUD3 PE=3 SV=2
          Length = 1478

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -2

Query: 524 KVVTVISGQTVVTPETVDKLKSIIESEKDPRDWQT-DLANNADTLWSTTVDVISQF 360
           K+ T+I G      E + KLK II+   D +DW+T +    AD  + +  DVI  F
Sbjct: 376 KLDTLIHGPQ----EKLTKLKLIIDRLFDSKDWETNEEQKEADRCYRSICDVIDSF 427

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917383|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B06.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TWJ1|A9TWJ1_PHYPA Predicted protein OS=Physcomitrella paten...   101   2e-20
tr|A6DL53|A6DL53_9BACT VCBS OS=Lentisphaera araneosa HTCC2155 GN...    37   0.49 
tr|A8LV32|A8LV32_SALAI Short-chain dehydrogenase/reductase SDR O...    34   4.1  
tr|A4X975|A4X975_SALTO Short-chain dehydrogenase/reductase SDR O...    34   4.1  
tr|A9SZF7|A9SZF7_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.1  
tr|Q0SG00|Q0SG00_RHOSR Putative uncharacterized protein OS=Rhodo...    33   9.2  

>tr|A9TWJ1|A9TWJ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172374 PE=4 SV=1
          Length = 556

 Score =  101 bits (252), Expect = 2e-20
 Identities = 72/204 (35%), Positives = 98/204 (48%), Gaps = 33/204 (16%)
 Frame = -2

Query: 533 VLDKVVTVISGQTVVTPETVDK-LKSIIESEKDPRDWQTDLANNADTLWSTTVDVIS--- 366
           VLDKVVTV+SGQ VV P+ ++K +K IIE  +    W+  L +NA     + VD IS   
Sbjct: 143 VLDKVVTVVSGQVVVNPDELEKDIKEIIEKPESFEKWRNGLLDNAIDTIGSAVDGISAAV 202

Query: 365 -----------------------------QFDPISLLEATGNGIQGLGXXXXXXXXXXEL 273
                                           P  L E+    + G+           EL
Sbjct: 203 DALKLSFGRLRNMLLQFGTITSFKLGHVTHLSPQGLQESVSTSVAGVFEVGAERFAAFEL 262

Query: 272 STLVALGERWVLWTPFVILPMYWQMTRN*KNEENDGGNRGISQAMVVELSEAAVAKAARV 93
            +LV L ERW+++ P V+LPM WQM         D   R   + +V   S+   AKA RV
Sbjct: 263 QSLVGLTERWLIYIPLVVLPMAWQMRARSSAAAADARERDDRRLVV---SKEVEAKAERV 319

Query: 92  RDELERIELKASLLDLVYSLGKLA 21
           R ELERI+LKASL+DL+ S+G++A
Sbjct: 320 RRELERIKLKASLMDLINSMGEVA 343


>tr|A6DL53|A6DL53_9BACT VCBS OS=Lentisphaera araneosa HTCC2155
            GN=LNTAR_20653 PE=4 SV=1
          Length = 4990

 Score = 37.4 bits (85), Expect = 0.49
 Identities = 20/77 (25%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
 Frame = -2

Query: 533  VLDKVVTVISGQTVVTPETVDKLKSIIESEKDPRDWQTDLANNADTLW--STTVDVISQF 360
            +++  + V +GQT+ TPET++++ SI  +   P + +T +  NA+ +    ++  V+S+ 
Sbjct: 949  IINNEIVVGAGQTITTPETINQVISITGAAAAPEE-ETVILTNANLVAEDESSAAVVSEL 1007

Query: 359  DPISLLEATGNGIQGLG 309
            + ++L  ++ N I   G
Sbjct: 1008 ENLTLAASSDNNIDATG 1024


>tr|A8LV32|A8LV32_SALAI Short-chain dehydrogenase/reductase SDR
           OS=Salinispora arenicola (strain CNS-205) GN=Sare_3217
           PE=3 SV=1
          Length = 247

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 167 GGNRGISQAMVVELSEAAVAKAARVRDELERIELKASLLDLVYSLGKLAW 18
           GG+RGI +A+ + L+      A   RD  ER    A ++D + +LG+ AW
Sbjct: 14  GGSRGIGEAVALRLAADGADVALTYRDSAER---AADVVDRIKALGRRAW 60


>tr|A4X975|A4X975_SALTO Short-chain dehydrogenase/reductase SDR
           OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818
           / CNB-440) GN=Strop_2998 PE=3 SV=1
          Length = 261

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = -2

Query: 167 GGNRGISQAMVVELSEAAVAKAARVRDELERIELKASLLDLVYSLGKLAW 18
           GG+RGI +A+ + L+      A   RD  ER    A ++D + +LG+ AW
Sbjct: 28  GGSRGIGEAVALRLAADGADVALTYRDSAER---AADVVDRIKALGRRAW 74


>tr|A9SZF7|A9SZF7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_167270 PE=4 SV=1
          Length = 613

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
 Frame = -2

Query: 506 SGQTVVTPETVDKLKSIIESEKDPRD--WQTDLANNADTLWSTTVDVISQFDPISLLEAT 333
           S ++ + P TVDKLK++  +EK PRD  +++DL++     +S  +       P S++E+T
Sbjct: 264 SPRSNLAPTTVDKLKNLGVNEKSPRDISYRSDLSSQPQAKYSPPLSY-----PDSMVEST 318

Query: 332 GNG 324
             G
Sbjct: 319 QKG 321


>tr|Q0SG00|Q0SG00_RHOSR Putative uncharacterized protein
           OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro01723 PE=4
           SV=1
          Length = 393

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -2

Query: 512 VISGQTVVTPETVDKLKSIIESEKDPRDWQTDLANNADTLWSTTVDVISQFDPISLLEAT 333
           V+S +   +P   D ++S +        W T++      LW+ T DV+     + LL  T
Sbjct: 193 VVSVEAAASPSAADVVQSDLRGVGVDSVWDTEVDGRIGLLWAATADVLD--SALDLLGRT 250

Query: 332 GNGIQGL 312
           G+G  G+
Sbjct: 251 GHGRIGV 257