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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917385
Clone id YMU001_000100_B08
Library
Length 399
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATTGCCAAAGACATCAACAAATAACATGACTGATTTATNAGAATGTGGGGCAATAGCAAG
CACAAATTTTGGCACTTACTAAGTGGAAGGGGACAACATGGGTGACAGGATCGAGATGCA
TCTAGAGATATCGTAGGTATTATAGGCCTTGAGGAGTTGACGGGGACAATCAGGAATCGA
GTCAAAATTACAAAATGGGTTATAAAGGTACAGTATATATATACACACTAAATATGTACC
AAGCGGATTGAGGTTATAAAAAGGCAAAGTTTACTTAACAAGAAAGTACACAGTATGGTG
AAGAAAAGGCTAATTATGTGGGTAGAGCTTCGAAGAAGGTGCATAAGCTATGACTTAATT
ATCTGCAAATAGTTCGGATTTGACCACTCCTTGGGTGAT
■■Homology search results ■■ -
sp_hit_id P16718
Definition sp|P16718|VA28_SHEVK Viral replication protein A28-like OS=Sheeppox virus (strain KS-1)
Align length 47
Score (bit) 32.0
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917385|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B08.
         (399 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16718|VA28_SHEVK Viral replication protein A28-like OS=Sheep...    32   0.98 
sp|Q8JTR0|VA28_LSDV Viral replication protein A28-like OS=Lumpy ...    32   0.98 
sp|Q8LB60|CCU31_ARATH Cyclin-U3-1 OS=Arabidopsis thaliana GN=CYC...    30   3.7  
sp|O75473|LGR5_HUMAN Leucine-rich repeat-containing G-protein co...    30   4.9  
sp|P68502|MTB_SALAL Metallothionein B OS=Salvelinus alpinus GN=m...    29   6.4  
sp|P68501|MTB_ONCMY Metallothionein B OS=Oncorhynchus mykiss GN=...    29   6.4  
sp|P77400|YBAT_ECOLI Inner membrane transport protein ybaT OS=Es...    29   8.3  
sp|P32739|NAD2_CAEEL Sodium-dependent high-affinity dicarboxylat...    29   8.3  
sp|O13257|MT_LIZAU Metallothionein OS=Liza aurata GN=mt PE=3 SV=1      29   8.3  
sp|P52720|MTB_SALSA Metallothionein B OS=Salmo salar GN=mtb PE=3...    29   8.3  
sp|Q8AWG1|MTB_CARCW Metallothionein B OS=Carassius cuvieri GN=mt...    29   8.3  
sp|O13269|MT1_CYPCA Metallothionein-1 OS=Cyprinus carpio GN=mt1 ...    29   8.3  
sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 OS=Leishmani...    29   8.3  

>sp|P16718|VA28_SHEVK Viral replication protein A28-like OS=Sheeppox
           virus (strain KS-1) GN=HM3 PE=3 SV=1
          Length = 140

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -1

Query: 243 LGTYLVCIYILYLYNPFCNFDSIPDCPRQLLKAYNTYDISRCISILS 103
           L T  VCI I  LY+ + N+D+I    ++   A++ ++ S+ ++ LS
Sbjct: 11  LSTVAVCIIIFQLYSIYLNYDNI----KEFNSAHSAFEFSKSVNTLS 53


>sp|Q8JTR0|VA28_LSDV Viral replication protein A28-like OS=Lumpy
           skin disease virus GN=LSDV118 PE=3 SV=2
          Length = 140

 Score = 32.0 bits (71), Expect = 0.98
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -1

Query: 243 LGTYLVCIYILYLYNPFCNFDSIPDCPRQLLKAYNTYDISRCISILS 103
           L T  VCI I  LY+ + N+D+I    ++   A++ ++ S+ ++ LS
Sbjct: 11  LSTVAVCIIIFQLYSIYLNYDNI----KEFNSAHSAFEFSKSVNTLS 53


>sp|Q8LB60|CCU31_ARATH Cyclin-U3-1 OS=Arabidopsis thaliana
           GN=CYCU3-1 PE=1 SV=2
          Length = 221

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 227 CVYIYCTFITHFVILTRFLIVPVNSSRPIIPTISLDA 117
           C  I   +I HF+  TR L+ P+N  R II T+ L A
Sbjct: 92  CFVIAHIYIDHFLHKTRALLKPLNVHRLIITTVMLAA 128


>sp|O75473|LGR5_HUMAN Leucine-rich repeat-containing G-protein
           coupled receptor 5 OS=Homo sapiens GN=LGR5 PE=2 SV=1
          Length = 907

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 98  CCPLPLSKCQNLCLLLPHILINQSCYLLMSLA 3
           C PLP  +   +  ++  IL+N  C+L+M++A
Sbjct: 712 CLPLPFGEPSTMGYMVALILLNSLCFLMMTIA 743


>sp|P68502|MTB_SALAL Metallothionein B OS=Salvelinus alpinus GN=mtb
           PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 113 RSCHPCCPLPLSKCQNLCL 57
           +SC PCCP   SKC + C+
Sbjct: 30  KSCCPCCPSDCSKCASGCV 48


>sp|P68501|MTB_ONCMY Metallothionein B OS=Oncorhynchus mykiss GN=mtb
           PE=3 SV=1
          Length = 60

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 113 RSCHPCCPLPLSKCQNLCL 57
           +SC PCCP   SKC + C+
Sbjct: 30  KSCCPCCPSDCSKCASGCV 48


>sp|P77400|YBAT_ECOLI Inner membrane transport protein ybaT
           OS=Escherichia coli (strain K12) GN=ybaT PE=1 SV=1
          Length = 430

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 386 WSNPNYLQIIKS*LMHLLRSSTHIISLFFTILCTFLLSKLCLFITSIRLVH 234
           W    +  II   L+ L+ ++ ++ SL      TFL+  L +F+ +IRL H
Sbjct: 322 WRQSTWGNIIVVVLIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRH 372


>sp|P32739|NAD2_CAEEL Sodium-dependent high-affinity dicarboxylate
           transporter 2 OS=Caenorhabditis elegans GN=nac-2 PE=2
           SV=3
          Length = 551

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 THIISLFFTILCTFLLSKLCLFITSIRL 240
           T +IS+   I+C FLL+  C+ ITS+ +
Sbjct: 495 TKVISMVEMIVCGFLLNIACILITSLNM 522


>sp|O13257|MT_LIZAU Metallothionein OS=Liza aurata GN=mt PE=3 SV=1
          Length = 60

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 113 RSCHPCCPLPLSKCQNLCL 57
           +SC PCCP   SKC + C+
Sbjct: 30  KSCCPCCPSGCSKCASGCV 48


>sp|P52720|MTB_SALSA Metallothionein B OS=Salmo salar GN=mtb PE=3
           SV=1
          Length = 60

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 113 RSCHPCCPLPLSKCQNLCL 57
           +SC PCCP   SKC + C+
Sbjct: 30  KSCCPCCPSGCSKCASGCV 48
tr_hit_id Q4YFK5
Definition tr|Q4YFK5|Q4YFK5_PLABE Putative uncharacterized protein (Fragment) OS=Plasmodium berghei
Align length 85
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917385|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_B08.
         (399 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4YFK5|Q4YFK5_PLABE Putative uncharacterized protein (Fragmen...    35   1.9  
tr|A7RAB9|A7RAB9_MESMA NADH-ubiquinone oxidoreductase chain 4 OS...    34   4.1  
tr|Q4C829|Q4C829_CROWT Pentapeptide repeat OS=Crocosphaera watso...    33   5.4  
tr|B8I6U6|B8I6U6_CLOCE Putative uncharacterized protein OS=Clost...    33   7.0  
tr|A7S9B8|A7S9B8_NEMVE Predicted protein (Fragment) OS=Nematoste...    33   9.2  

>tr|Q4YFK5|Q4YFK5_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB404409.00.0 PE=4 SV=1
          Length = 175

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = -2

Query: 326 STHIISLFFTILCTFLLSKL-CLFITSIRL--VHI*CVYIYCTFITHFVILTRFLIVPVN 156
           S H+ S+ F +      S L CL++  + L  +++ C YI   FI+   I   FL +P N
Sbjct: 11  SAHVYSVLFLLSLYLPCSYLPCLYLPCLYLPCLYLPCFYISLVFISPLFISPLFLYLPTN 70

Query: 155 S------SRPIIPTISLDASRSCHP 99
           S      + P  P +SL  + S HP
Sbjct: 71  SNPLSNNNPPSNPGLSLLYTLSSHP 95


>tr|A7RAB9|A7RAB9_MESMA NADH-ubiquinone oxidoreductase chain 4
           OS=Mesobuthus martensii GN=ND4 PE=3 SV=1
          Length = 438

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 23/76 (30%), Positives = 41/76 (53%)
 Frame = -2

Query: 344 MHLLRSSTHIISLFFTILCTFLLSKLCLFITSIRLVHI*CVYIYCTFITHFVILTRFLIV 165
           M  L  S H+ S FF  L +F L  L +FI+++ ++    +    +F+   +IL  FL++
Sbjct: 34  MLFLPFSQHLSSFFFLDLLSFTLILLSIFISALMILSTSLLENKNSFLNITLILLFFLLL 93

Query: 164 PVNSSRPIIPTISLDA 117
             +SS  ++  IS +A
Sbjct: 94  SFSSSNLMLFYISFEA 109


>tr|Q4C829|Q4C829_CROWT Pentapeptide repeat OS=Crocosphaera watsonii
           GN=CwatDRAFT_5479 PE=4 SV=1
          Length = 229

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 246 PLGTYLVCIYILYLYNPFCNFDSIPDCPRQLLKAYN 139
           P+  Y   + +L   NPFCNFDS+   P +L++ Y+
Sbjct: 3   PIPIYKRLVPLLNQSNPFCNFDSVSMKPSELIERYS 38


>tr|B8I6U6|B8I6U6_CLOCE Putative uncharacterized protein
           OS=Clostridium cellulolyticum H10 GN=Ccel_2610 PE=4 SV=1
          Length = 330

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 214 YIYTH*ICTKRIEVIKRQSLLNKKVHSMVKKRLIMWVELRRRCIS--YDLIICK*FGF 381
           YIY H      I+V+  Q LLNKKVH +   RLI      R+ I   Y+ +I   F +
Sbjct: 130 YIYYHRRFETSIDVLMCQRLLNKKVHEIRIDRLISVTSKERKIIGEMYESVIDSVFNY 187


>tr|A7S9B8|A7S9B8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g109967 PE=4 SV=1
          Length = 120

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
 Frame = -2

Query: 344 MHLLRSSTHIISLFFTILCTFLLSKLCLFITSIRLVHI*CVYIYCT----------FITH 195
           MHLL   T  IS ++ ILCT  L+  C+ +  +  V I   YI C            + H
Sbjct: 10  MHLLLLHTVCISSYY-ILCTSPLTTYCVHLLLLHTVCISSYYILCASPLTTYCIHLLLLH 68

Query: 194 FVILTRFLIV---PVNSSRPIIPTISLDASRSCHPCCPLPLSK-CQNLCLL 54
            V ++ + I+   P+ +    +P +      S +  C  PL+  C +L LL
Sbjct: 69  TVCISSYYILCASPLTTYCVHLPLLHTVCISSYYILCASPLTTYCVHLLLL 119