BP917386 |
Clone id |
YMU001_000100_B09 |
Library |
YMU01 |
Length |
546 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000100_B09. |
Accession |
BP917386 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TGCTCGTGAGCAGATTCTAGATGTCATGGAACAAGAAATTCGAGAACCAAAGACCGAACA GAAGGCTAATGCCCCACGTAAAGGCAATTTCTCTGTTCAGCGAGAAATGGTGGGTCGATT AATCGGACCTCATGGAAGTACTGTGAAGAACATTGAACGAACTACAGGTGTCCGTTTGAG CATCTCTGAGGATGGGAGAGTTTGCGTTATAGCAAAAGACCAATCCAGCTATGATCAAGC AAAAGACATGGTTGACTCTGTAATAGGCAAGGAAATTGAGATTGGAAACATCTATAGTGG GTGTGTTACTCAAATAAGAGACTTTGGGGCCTTTGTTGAGATAGAAGGAGGGCATCAGGG GCTTCTCCATATATCTGAACTTTCGCATCAAAGGGTGGCCCAGGTAACAGATGCTGTAAT GTTAGGGCAGAAATTGAGTGTCATGTGCATAGGAAGAGATACAAAGGGAAACATAAAGCT GTCCTTGAAGGCAACAATGCCTCTGTCAACAGCGTGACAGAACAGAGAAATCAGGCCGCT CGAGCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q822C1 |
Definition |
sp|Q822C1|PNP_CHLCV Polyribonucleotide nucleotidyltransferase OS=Chlamydophila caviae |
Align length |
165 |
Score (bit) |
125.0 |
E-value |
1.0e-28 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TVK9 |
Definition |
tr|A9TVK9|A9TVK9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
168 |
Score (bit) |
193.0 |
E-value |
6.0e-48 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917386|Adiantum capillus-veneris mRNA, clone: YMU001_000100_B09. (546 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TVK9|A9TVK9_PHYPA Predicted protein OS=Physcomitrella paten... 193 6e-48 tr|A7PM62|A7PM62_VITVI Chromosome chr14 scaffold_21, whole genom... 184 3e-45 tr|B7ZZV8|B7ZZV8_MAIZE Putative uncharacterized protein OS=Zea m... 159 9e-38 tr|Q6KAI0|Q6KAI0_ORYSJ Putative polyribonucleotide nucleotidyltr... 156 8e-37 tr|B8AFG8|B8AFG8_ORYSI Putative uncharacterized protein OS=Oryza... 156 8e-37 tr|A3A938|A3A938_ORYSJ Putative uncharacterized protein OS=Oryza... 156 8e-37 tr|Q9S7G6|Q9S7G6_ARATH Polynucleotide phosphorylase (Polynucleot... 153 7e-36 tr|A4RT74|A4RT74_OSTLU Predicted protein OS=Ostreococcus lucimar... 134 2e-30 tr|B4D3R8|B4D3R8_9BACT Polyribonucleotide nucleotidyltransferase... 133 7e-30 tr|B3DZ86|B3DZ86_METI4 Polyribonucleotide nucleotidyltransferase... 132 9e-30 tr|Q01E21|Q01E21_OSTTA Putative polyribonucleotide nucleotidyltr... 129 1e-28 tr|A6DU91|A6DU91_9BACT Polynucleotide phosphorylase/polyadenylas... 126 9e-28 tr|A9BNB8|A9BNB8_DELAS Polyribonucleotide nucleotidyltransferase... 124 4e-27 tr|Q2B0B2|Q2B0B2_9BACI PnpA OS=Bacillus sp. NRRL B-14911 GN=B149... 123 6e-27 tr|Q1PVN2|Q1PVN2_9BACT Stronly similar to polynucleotide phospho... 123 6e-27 tr|Q0DZI0|Q0DZI0_ORYSJ Os02g0617700 protein (Fragment) OS=Oryza ... 123 6e-27 tr|B0BAV0|B0BAV0_CHLTB Polyribonucleotide nucleotidyltransferase... 123 7e-27 tr|B0B971|B0B971_CHLT2 Polyribonucleotide nucleotidyltransferase... 123 7e-27 tr|B7R8T1|B7R8T1_9THEO 3' exoribonuclease family, domain 2, prot... 123 7e-27 tr|A8SN93|A8SN93_9FIRM Putative uncharacterized protein OS=Parvi... 122 1e-26 tr|B0K9P4|B0K9P4_THEP3 Polyribonucleotide nucleotidyltransferase... 122 2e-26 tr|B0K1D0|B0K1D0_THEPX Polyribonucleotide nucleotidyltransferase... 122 2e-26 tr|B1ZS98|B1ZS98_OPITP Polyribonucleotide nucleotidyltransferase... 121 2e-26 tr|B8FR00|B8FR00_DESHD Polyribonucleotide nucleotidyltransferase... 121 2e-26 tr|B7YTR5|B7YTR5_VARPD Polyribonucleotide nucleotidyltransferase... 121 2e-26 tr|B2UNA9|B2UNA9_AKKM8 Polyribonucleotide nucleotidyltransferase... 121 3e-26 tr|B0THS2|B0THS2_HELMI Polyribonucleotide nucleotidyltransferase... 121 3e-26 tr|A8CNM3|A8CNM3_9CHLR Polyribonucleotide nucleotidyltransferase... 121 3e-26 tr|B7D1V3|B7D1V3_9BURK Polyribonucleotide nucleotidyltransferase... 120 4e-26 tr|B1SQQ0|B1SQQ0_9BACI 3' exoribonuclease OS=Geobacillus sp. WCH... 120 4e-26
>tr|A9TVK9|A9TVK9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_151398 PE=4 SV=1 Length = 817
Score = 193 bits (490), Expect = 6e-48 Identities = 89/168 (52%), Positives = 129/168 (76%), Gaps = 1/168 (0%) Frame = +2
Query: 5 REQILDVMEQEIREPK-TEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 R QILD MEQ I P+ + + N PR G ++Q++ +GRLIGP GS +KNI++ + R++ Sbjct: 619 RTQILDFMEQVISSPRDSTARENLPRSGTMNIQQDSIGRLIGPQGSNIKNIQKVSDARIN 678
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 IS DG V + A+DQ+S+D AK MV++ +GKE+E+G YS V I+DFGAF+E+ GG+QG Sbjct: 679 ISGDGVVTIFARDQASFDLAKQMVEASVGKEVEVGGTYSARVVAIKDFGAFMELNGGYQG 738
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMPL 505 LLHISE++H+R+ +V+D + +GQ+LSV+CIGRD +GN+KLS K T+PL Sbjct: 739 LLHISEIAHERIERVSDYLSIGQELSVVCIGRDLRGNLKLSRKMTLPL 786
>tr|A7PM62|A7PM62_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020698001 PE=4 SV=1 Length = 857
Score = 184 bits (466), Expect = 3e-45 Identities = 88/166 (53%), Positives = 122/166 (73%) Frame = +2
Query: 5 REQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLSI 184 R QILD MEQEI P+T+ N+PR + + RL+GP G+ + IE TG R+S+ Sbjct: 462 RLQILDRMEQEINAPRTQHYRNSPRLATLKFSNDSLRRLLGPMGALKRKIEEETGARISV 521
Query: 185 SEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQGL 364 S DG + V+AK+QS D+ ++ VD ++G+EIEIG IY G VT ++++GAFVE GG QGL Sbjct: 522 S-DGTLTVVAKNQSVMDKVQEKVDFIVGREIEIGGIYKGVVTSVKEYGAFVEFNGGQQGL 580
Query: 365 LHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMP 502 LHISELSH+ V +V+D V +GQ++S+MCIG+D +GNIKLSLK+T+P Sbjct: 581 LHISELSHEPVVRVSDVVSIGQQISLMCIGQDVRGNIKLSLKSTLP 626
Score = 37.4 bits (85), Expect = 0.52 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Frame = +2
Query: 176 LSISEDGRV---CVIAKDQSSYDQAKDMVDSVIG-KEIEIGNIYSGCVTQIRDFGAFVEI 343 LS+ EDG A Q+ + K++ ++ G K +++G + V QIR G +++ Sbjct: 752 LSMGEDGDKHGSAFNANSQNDLNDTKEVPETCTGAKNLKLGMKLNAKVYQIRTHGLVLDL 811
Query: 344 EGGHQGLLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSL 487 GG +G+ + +R +V G +L VMC TKG +SL Sbjct: 812 GGGIRGMYRFEGDNDKRDFKV------GDELHVMCSSFSTKGIPVMSL 853
>tr|B7ZZV8|B7ZZV8_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 733
Score = 159 bits (402), Expect = 9e-38 Identities = 85/167 (50%), Positives = 113/167 (67%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR QILD M+QEI + ++PR S E + +L+ K IE+ TG R+S Sbjct: 351 ARNQILDRMDQEISTARGINDGSSPRLATLSFSNESLRKLLFHR----KKIEQETGARVS 406
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 IS DG V ++AK Q D+A + V+ ++G+EIE+G Y G V+ I+++GAFVE GG QG Sbjct: 407 IS-DGTVTIVAKTQEIMDKAIEKVEFLVGREIEVGRTYKGIVSSIKEYGAFVEFNGGQQG 465
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMP 502 LLHISELSHQ V +V+D V LGQ LS+ CIG+D +GNIKLSLKAT+P Sbjct: 466 LLHISELSHQPVTKVSDVVTLGQSLSLRCIGQDMRGNIKLSLKATLP 512
>tr|Q6KAI0|Q6KAI0_ORYSJ Putative polyribonucleotide nucleotidyltransferase OS=Oryza sativa subsp. japonica GN=OJ1014_H03.14 PE=4 SV=1 Length = 982
Score = 156 bits (394), Expect = 8e-37 Identities = 81/167 (48%), Positives = 114/167 (68%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR QILD M+QEI + ++PR S + + +L+ K IE+ TG R+S Sbjct: 600 ARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLLFHR----KKIEQETGARVS 655
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 +S DG V ++AK Q D+A + V+ ++G+EIE+G Y G V+ I+++GAFVE GG QG Sbjct: 656 VS-DGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQG 714
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMP 502 LLHISELSH +V++V+D V +GQ LS+ CIG+D +GNIKLSLKAT+P Sbjct: 715 LLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLP 761
>tr|B8AFG8|B8AFG8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08089 PE=4 SV=1 Length = 1030
Score = 156 bits (394), Expect = 8e-37 Identities = 81/167 (48%), Positives = 114/167 (68%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR QILD M+QEI + ++PR S + + +L+ K IE+ TG R+S Sbjct: 648 ARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLLFHR----KKIEQETGARVS 703
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 +S DG V ++AK Q D+A + V+ ++G+EIE+G Y G V+ I+++GAFVE GG QG Sbjct: 704 VS-DGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGKTYKGVVSSIKEYGAFVEFNGGQQG 762
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMP 502 LLHISELSH +V++V+D V +GQ LS+ CIG+D +GNIKLSLKAT+P Sbjct: 763 LLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLP 809
>tr|A3A938|A3A938_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_007310 PE=4 SV=1 Length = 1448
Score = 156 bits (394), Expect = 8e-37 Identities = 81/167 (48%), Positives = 114/167 (68%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR QILD M+QEI + ++PR S + + +L+ K IE+ TG R+S Sbjct: 559 ARNQILDRMDQEISSARAFNDGSSPRLATLSFSSDSLRKLLFHR----KKIEQETGARVS 614
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 +S DG V ++AK Q D+A + V+ ++G+EIE+G Y G V+ I+++GAFVE GG QG Sbjct: 615 VS-DGTVTIVAKTQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQG 673
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMP 502 LLHISELSH +V++V+D V +GQ LS+ CIG+D +GNIKLSLKAT+P Sbjct: 674 LLHISELSHDKVSKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLP 720
>tr|Q9S7G6|Q9S7G6_ARATH Polynucleotide phosphorylase (Polynucleotide phosphorylase) OS=Arabidopsis thaliana GN=Pnp PE=2 SV=1 Length = 991
Score = 153 bits (386), Expect = 7e-36 Identities = 76/167 (45%), Positives = 113/167 (67%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR QILD ME+ I P+ + A +PR + + LIGP G + IE TG RLS Sbjct: 585 ARLQILDHMERNINSPRGQDGAYSPRLATLKYSNDSLRTLIGPMGVLKRKIEVETGARLS 644
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 I ++G + ++AK+Q ++A++ VD +IG+E+ +G +Y G V+ I+++GAFVE GG QG Sbjct: 645 I-DNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQG 703
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMP 502 LLH+SELSH+ V++V+D + +GQ ++ MCI D +GNIKLS KA +P Sbjct: 704 LLHMSELSHEPVSKVSDVLDIGQCITTMCIETDVRGNIKLSRKALLP 750
>tr|A4RT74|A4RT74_OSTLU Predicted protein OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_12216 PE=4 SV=1 Length = 679
Score = 134 bits (338), Expect = 2e-30 Identities = 60/168 (35%), Positives = 109/168 (64%), Gaps = 1/168 (0%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR++++DVME+ + EPK+ K +APR G ++ ++G+LIGP GS +K +E+ TG ++S Sbjct: 487 ARQKVIDVMERAVSEPKSVMKDSAPRYGRATLPPALIGKLIGPQGSNIKALEKETGAKVS 546
Query: 182 I-SEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQ 358 + ++DG + V ++++SYD A ++++ +E+G Y+ V ++ FG + G Sbjct: 547 VVNDDGDLAVFGQNKASYDAAIAHIENLKNSIVEVGKTYATTVKEVLPFGCVLTTASGDD 606
Query: 359 GLLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATMP 502 GLLH+SE++H+ V+D +G ++ V C+ +D +G+IK S KA +P Sbjct: 607 GLLHVSEIAHEHTENVSDVYSVGDQVEVKCVKKDARGSIKWSRKALLP 654
>tr|B4D3R8|B4D3R8_9BACT Polyribonucleotide nucleotidyltransferase OS=Chthoniobacter flavus Ellin428 GN=CfE428DRAFT_3556 PE=4 SV=1 Length = 716
Score = 133 bits (334), Expect = 7e-30 Identities = 68/166 (40%), Positives = 102/166 (61%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR ++LDVM+ + +P+TE APR + + +G +IGP G T+K I TG ++ Sbjct: 535 ARMRVLDVMDSALSQPRTELSKYAPRIETIRINPDKIGLIIGPGGKTIKGIVAETGAEIN 594
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 I +DG V + + + S +AK +++ + KEI +G +Y G V I++FG FVE+ G G Sbjct: 595 IEDDGSVHIYSNNGDSLLRAKQIIEGMT-KEISVGEMYQGRVVTIKEFGCFVEVLPGKDG 653
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATM 499 ++HISEL+ RV +V D V +G + V CIG D KG +KLS KA M Sbjct: 654 MVHISELADFRVNRVEDVVKMGDVIWVKCIGVDEKGRVKLSRKAAM 699
>tr|B3DZ86|B3DZ86_METI4 Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) OS=Methylacidiphilum infernorum (isolate V4) GN=pnp PE=4 SV=1 Length = 669
Score = 132 bits (333), Expect = 9e-30 Identities = 66/166 (39%), Positives = 100/166 (60%) Frame = +2
Query: 2 AREQILDVMEQEIREPKTEQKANAPRKGNFSVQREMVGRLIGPHGSTVKNIERTTGVRLS 181 AR ILD M++ I P+ E +APR + + +G LIGP G T+K I +G ++ Sbjct: 496 ARMVILDCMDKVINAPRAEISKHAPRIEKIKIHPDKIGLLIGPGGKTIKKISAESGAEIT 555
Query: 182 ISEDGRVCVIAKDQSSYDQAKDMVDSVIGKEIEIGNIYSGCVTQIRDFGAFVEIEGGHQG 361 I +DG V + + S + A++M++ ++G E+ +G IY V ++DFG F+EI+G +G Sbjct: 556 IEDDGTVMIYSSSADSLEAAREMIEDMVG-EVTVGGIYRSKVVSVKDFGCFIEIKGKGEG 614
Query: 362 LLHISELSHQRVAQVTDAVMLGQKLSVMCIGRDTKGNIKLSLKATM 499 L+HISELS V +V V +G+++ V CIG D KG K S KA M Sbjct: 615 LVHISELSDTPVRRVDQVVRVGEEIWVKCIGVDEKGRYKFSRKAAM 660
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