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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917389
Clone id YMU001_000100_C02
Library
Length 490
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_C02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTGTATATACATCCTGATCACATACAATTCATCTGGCTAATTCCTATCTAATGGAAAGA
ACCTACAACATGACGACCAAATGGGGCATCAACGAAGTGGCCCGTTGAAACGCCTCTTCA
TGCTCCAACATCGCTGTCACTCGATGAGCTCTCAGAATCCGAATCACTTGACGAGCCAGA
GTCGCTACTTGAACTGCCTGAACTACTTGGCCTGTTCCCACCACTGGCTGCATCATTTTG
AGCCGTTACAACCGGTGACACTGCCTTGGGTACGTCTCCGATGATGTCTATGTCTTCTTC
TTGAACTGGATCATCTGGTCTTTATAAGCCATCTTCAACTCCAACATTGTCAATTGATGG
CTGATCCTGCTCTCCAACAGCACTCTTACTTGTCTCCATACTTTTAAGGCCATTTTTGAC
ACAAGCATCAAGCTCCCAGAGCGTTTCATTATCAAAAGAATCTATGTCTACCTCAATCTC
ATCGTCCTTT
■■Homology search results ■■ -
sp_hit_id Q8BJQ4
Definition sp|Q8BJQ4|TCAM2_MOUSE TIR domain-containing adapter molecule 2 OS=Mus musculus
Align length 53
Score (bit) 35.4
E-value 0.14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917389|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C02.
         (490 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BJQ4|TCAM2_MOUSE TIR domain-containing adapter molecule 2 O...    35   0.14 
sp|Q09314|YQT2_CAEEL Uncharacterized protein F25B5.2 OS=Caenorha...    32   2.0  
sp|Q9M4U4|HDT3_MAIZE Histone deacetylase HDT3 OS=Zea mays GN=HDT...    30   5.9  
sp|Q9KAH8|ALLB_BACHD Allantoinase OS=Bacillus halodurans GN=allB...    30   7.8  

>sp|Q8BJQ4|TCAM2_MOUSE TIR domain-containing adapter molecule 2
           OS=Mus musculus GN=Ticam2 PE=2 SV=1
          Length = 232

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 489 KDDEIEVDIDSFDNETLWELDACVKNGLKSMETSKSAVGEQDQPSIDNVGVED 331
           K D ++ D D  ++++    +AC++  ++    S+   GEQDQP     G E+
Sbjct: 17  KKDSVDADQDGHESDSKNSEEACLRGFVEQSSGSEPPTGEQDQPEAKGAGPEE 69


>sp|Q09314|YQT2_CAEEL Uncharacterized protein F25B5.2
           OS=Caenorhabditis elegans GN=F25B5.2 PE=2 SV=1
          Length = 757

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 384 SAVGEQDQPSIDNVGVEDGL*RPDDPVQEEDIDIIGDVPKAVSPVVTAQNDAASGG 217
           S+   +D P  + + V +   R D P+ EED ++ G   +     VT+ ND+A  G
Sbjct: 246 SSKNMEDVPEEEALTVSNSSIRVDAPIAEEDEEVFGAAKEYFDNNVTSHNDSADEG 301


>sp|Q9M4U4|HDT3_MAIZE Histone deacetylase HDT3 OS=Zea mays GN=HDT3
           PE=2 SV=1
          Length = 300

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = -2

Query: 483 DEIEVDIDSFDNETLWELDACVKNGL---KSMETSKSAVGEQDQPSIDNVGVEDGL*RPD 313
           +E E+D+DS D +    + A  +NG    K  ++ + AV    + S D+   +D     +
Sbjct: 97  EEDEMDLDSEDEDEELNVPAVKENGKADEKKQKSQEKAVAAPSKSSPDSKKSKDDDDSDE 156

Query: 312 DPVQEEDIDIIGDVPKAVSP 253
           D   + D D   D  + +SP
Sbjct: 157 DETDDSDEDETDDSDEGLSP 176


>sp|Q9KAH8|ALLB_BACHD Allantoinase OS=Bacillus halodurans GN=allB
           PE=3 SV=1
          Length = 438

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 444 TLWELDACVKNGLKSMETSKSAVGEQDQPSIDNVGV 337
           T +  D  ++NG+ S  T   ++   D P+ID  G+
Sbjct: 18  TTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGL 53
tr_hit_id Q9LXA7
Definition tr|Q9LXA7|Q9LXA7_ARATH Bromodomain protein-like OS=Arabidopsis thaliana
Align length 101
Score (bit) 56.2
E-value 8.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917389|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C02.
         (490 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LXA7|Q9LXA7_ARATH Bromodomain protein-like OS=Arabidopsis t...    56   8e-07
tr|Q5K543|Q5K543_NICBE Bromodomain-containing RNA-binding protei...    50   4e-05
tr|A7QS98|A7QS98_VITVI Chromosome chr3 scaffold_157, whole genom...    50   6e-05
tr|Q0JPM7|Q0JPM7_ORYSJ Os01g0214300 protein (Fragment) OS=Oryza ...    50   7e-05
tr|B8AAI9|B8AAI9_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|A2ZQM4|A2ZQM4_ORYSJ Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|Q9LSL2|Q9LSL2_ARATH Similarity to RING3 protein OS=Arabidopsi...    49   1e-04
tr|Q7Y214|Q7Y214_ARATH Putative uncharacterized protein At5g6563...    49   1e-04
tr|A9SEB7|A9SEB7_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   1e-04
tr|A9RJI5|A9RJI5_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|B4G138|B4G138_MAIZE Putative uncharacterized protein OS=Zea m...    49   2e-04
tr|Q5K544|Q5K544_NICBE Bromodomain-containing RNA-binding protei...    48   2e-04
tr|A7P1X3|A7P1X3_VITVI Chromosome chr19 scaffold_4, whole genome...    47   4e-04
tr|A1XX44|A1XX44_9MAGN Chloroplast bromodomain-containing protei...    47   5e-04
tr|Q5K545|Q5K545_SOLTU Bromodomain-containing RNA-binding protei...    47   6e-04
tr|Q5K542|Q5K542_TOBAC Bromodomain-containing RNA-binding protei...    47   6e-04
tr|Q5K541|Q5K541_TOBAC Bromodomain-containing RNA-binding protei...    47   6e-04
tr|Q9AR00|Q9AR00_SOLLC PSTVd RNA-biding protein, Virp1 (PSTVd RN...    46   0.001
tr|Q8RVV3|Q8RVV3_SOLLC Viroid RNA-binding protein (Fragment) OS=...    46   0.001
tr|A7R202|A7R202_VITVI Chromosome undetermined scaffold_388, who...    46   0.001
tr|Q0E2D1|Q0E2D1_ORYSJ Os02g0250300 protein OS=Oryza sativa subs...    45   0.001
tr|B8AEZ6|B8AEZ6_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.001
tr|B6TY40|B6TY40_MAIZE Bromodomain containing protein OS=Zea may...    45   0.001
tr|A7PJE3|A7PJE3_VITVI Chromosome chr12 scaffold_18, whole genom...    45   0.002
tr|A5B3F0|A5B3F0_VITVI Putative uncharacterized protein (Fragmen...    45   0.002
tr|Q9LNC4|Q9LNC4_ARATH F9P14.9 protein OS=Arabidopsis thaliana G...    44   0.003
tr|Q39379|Q39379_BRAOL Non intermediate filament IFA binding pro...    42   0.012
tr|Q9LMU8|Q9LMU8_ARATH F2H15.2 protein OS=Arabidopsis thaliana G...    42   0.015
tr|Q93ZU2|Q93ZU2_ARATH Putative uncharacterized protein At1g1779...    42   0.015
tr|Q8H1D7|Q8H1D7_ARATH Putative uncharacterized protein At1g1779...    42   0.015

>tr|Q9LXA7|Q9LXA7_ARATH Bromodomain protein-like OS=Arabidopsis
           thaliana GN=F12B17_100 PE=4 SV=1
          Length = 678

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
 Frame = -2

Query: 483 DEIEVDIDSFDNETLWELDACVKNGLKSMETSKS-------AVGEQDQPSIDNVGVEDGL 325
           DEIE+DI++ DNETLWELD  V N  K     K        +   ++ P +  +G  +  
Sbjct: 513 DEIELDIEALDNETLWELDRFVTNYRKMASKIKRQGFIQNVSTPPRNMPPVTEMGSAEKR 572

Query: 324 *RPDDPVQEEDIDIIGDVPKAVSPVVTAQND----AASGGN 214
            R      EED+DI  D+P    P V  + D    AASGG+
Sbjct: 573 GRKGGEAGEEDVDIGEDIPVEDYPSVEIERDGTAAAASGGS 613


>tr|Q5K543|Q5K543_NICBE Bromodomain-containing RNA-binding protein 2
           OS=Nicotiana benthamiana GN=brp2 PE=2 SV=1
          Length = 613

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 37/116 (31%), Positives = 48/116 (41%), Gaps = 25/116 (21%)
 Frame = -2

Query: 483 DEIEVDIDSFDNETLWELDACVKNGLKSMETSK----------------------SAVGE 370
           DEIE+DI++ D ETLWELD  V N  K +  +K                      ++V E
Sbjct: 457 DEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTSVAE 516

Query: 369 QDQPSIDNVGVEDGL*RP---DDPVQEEDIDIIGDVPKAVSPVVTAQNDAASGGNR 211
            D PS       D   +P    D   E+D++I  D P    P V    D   GG R
Sbjct: 517 ADGPSTSE--KNDSFKKPKKGGDAGDEDDVEIEDDEPATQFPPVEIDKDEGGGGGR 570


>tr|A7QS98|A7QS98_VITVI Chromosome chr3 scaffold_157, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00005742001
           PE=4 SV=1
          Length = 537

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 17/103 (16%)
 Frame = -2

Query: 483 DEIEVDIDSFDNETLWELDACVKNGLK-----------------SMETSKSAVGEQDQPS 355
           DEIE+DI++ D ETLWELD  V N  K                 + E ++S++ E+ +PS
Sbjct: 397 DEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMVNNNTAATEVNRSSMNERTEPS 456

Query: 354 IDNVGVEDGL*RPDDPVQEEDIDIIGDVPKAVSPVVTAQNDAA 226
           +     +           EED+DI  ++P A  P V  + D A
Sbjct: 457 LAPAMAKK---PKKGEAGEEDVDIGDEIPTATFPPVEIEKDDA 496


>tr|Q0JPM7|Q0JPM7_ORYSJ Os01g0214300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0214300 PE=4 SV=1
          Length = 166

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
 Frame = -2

Query: 486 DDEIEVDIDSFDNETLWELDACVKNGLKSMETSK----SAVGEQDQPSID 349
           DDEIEVDIDSFD ETLWELD  V N  KS+  +K    + V  QD+ + D
Sbjct: 9   DDEIEVDIDSFDVETLWELDRFVTNYKKSISKNKRKAENPVAGQDEMNHD 58


>tr|B8AAI9|B8AAI9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00884 PE=4 SV=1
          Length = 512

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
 Frame = -2

Query: 486 DDEIEVDIDSFDNETLWELDACVKNGLKSMETSK----SAVGEQDQPSID 349
           DDEIEVDIDSFD ETLWELD  V N  KS+  +K    + V  QD+ + D
Sbjct: 301 DDEIEVDIDSFDVETLWELDRFVTNYKKSISKNKRKAENPVAGQDEMNHD 350


>tr|A2ZQM4|A2ZQM4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_000846 PE=4 SV=1
          Length = 563

 Score = 49.7 bits (117), Expect = 7e-05
 Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
 Frame = -2

Query: 486 DDEIEVDIDSFDNETLWELDACVKNGLKSMETSK----SAVGEQDQPSID 349
           DDEIEVDIDSFD ETLWELD  V N  KS+  +K    + V  QD+ + D
Sbjct: 351 DDEIEVDIDSFDVETLWELDRFVTNYKKSISKNKRKAENPVAGQDEMNHD 400


>tr|Q9LSL2|Q9LSL2_ARATH Similarity to RING3 protein OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 643

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
 Frame = -2

Query: 483 DEIEVDIDSFDNETLWELDACVKNGLKSMETSKS-------AVGEQDQPSIDNVGVEDGL 325
           DEIE+DI++ DNETLWELD  V N  K     K        +   ++  S+  +G  +  
Sbjct: 498 DEIELDIEAVDNETLWELDRFVTNYKKMASKIKRQGFIRNVSTPPRNMASVAEMGSAEKR 557

Query: 324 *RPDDPVQEEDIDIIGDVPKAVSPVVTAQND------AASGGN 214
            R  D   EED+DI  D+P    P V  + D      AAS G+
Sbjct: 558 TRRGD-AGEEDVDIGEDIPIEDYPSVEIERDGTAVAAAASSGS 599


>tr|Q7Y214|Q7Y214_ARATH Putative uncharacterized protein At5g65630
           (At5g65630) OS=Arabidopsis thaliana GN=At5g65630 PE=2
           SV=1
          Length = 590

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
 Frame = -2

Query: 483 DEIEVDIDSFDNETLWELDACVKNGLKSMETSKS-------AVGEQDQPSIDNVGVEDGL 325
           DEIE+DI++ DNETLWELD  V N  K     K        +   ++  S+  +G  +  
Sbjct: 443 DEIELDIEAVDNETLWELDRFVTNYKKMASKIKRQGFIRNVSTPPRNMASVAEMGSAEKR 502

Query: 324 *RPDDPVQEEDIDIIGDVPKAVSPVVTAQND------AASGGN 214
            R  D   EED+DI  D+P    P V  + D      AAS G+
Sbjct: 503 TRRGD-AGEEDVDIGEDIPIEDYPSVEIERDGTAVAAAASSGS 544


>tr|A9SEB7|A9SEB7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_128382 PE=4 SV=1
          Length = 317

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/29 (75%), Positives = 25/29 (86%)
 Frame = -2

Query: 486 DDEIEVDIDSFDNETLWELDACVKNGLKS 400
           +DEIEVDIDSFDN+TLWELD  V N +KS
Sbjct: 282 EDEIEVDIDSFDNDTLWELDRFVTNYMKS 310


>tr|A9RJI5|A9RJI5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66961 PE=4 SV=1
          Length = 694

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 22/29 (75%), Positives = 25/29 (86%)
 Frame = -2

Query: 486 DDEIEVDIDSFDNETLWELDACVKNGLKS 400
           +DEIEVDIDSFDN+TLWELD  V N +KS
Sbjct: 456 EDEIEVDIDSFDNDTLWELDRFVTNYMKS 484