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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917393
Clone id YMU001_000100_C06
Library
Length 451
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_C06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAGCACTTTAACGGCTCCCCCATAGAAGCTTCTCTTCTAACCACTTTCAACCTTCATTTG
CTATGTTAAATGAGGTTGAAGGTCTAGACTAATCATAATTCATCACCATCCTGCCTGCTT
CCAATTAATAACTAGCTAATACATAAGTGTTAGCCTAAACCGGACCATTACTGTTAGGGC
TCGAGTTTCTGAACTGTGCATGAGCTATAGGCCTCACACGGCTCTTCTTAACAACTTAAA
TCCTCCACTTTGCTTGCAATCCCTGCTCGATTGGAGGGCCTGAACATTTGGTCTAAGCCT
TGGCGTTGGACTCTATAATTTCTGTGATGTCTGCACGCATCTCTGGCTATTCGCGGCTAA
GGTCCTAAGTCCTCAAGTCAGCCTATACTTTTTGAAGAATCCCGCTGTACTCACGGGCAT
ATGGCTTGGCAGGCCTTCCGTTTCCGGAGCT
■■Homology search results ■■ -
sp_hit_id P93311
Definition sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana
Align length 26
Score (bit) 39.3
E-value 0.008
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917393|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C06.
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial OS=...    39   0.008
sp|P92812|RM02_ORYSJ 60S ribosomal protein L2, mitochondrial OS=...    35   0.11 
sp|Q2F969|RM02_ORYSI 60S ribosomal protein L2, mitochondrial OS=...    35   0.11 
sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial OS=...    35   0.11 
sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial OS=...    33   0.57 
sp|Q5HT08|ACPS_CAMJR Holo-[acyl-carrier-protein] synthase OS=Cam...    30   6.3  
sp|A1W123|ACPS_CAMJJ Holo-[acyl-carrier-protein] synthase OS=Cam...    30   6.3  
sp|A7H5D0|ACPS_CAMJD Holo-[acyl-carrier-protein] synthase OS=Cam...    30   6.3  
sp|A8FN84|ACPS_CAMJ8 Holo-[acyl-carrier-protein] synthase OS=Cam...    30   6.3  

>sp|P93311|RM02_ARATH 60S ribosomal protein L2, mitochondrial
           OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1
          Length = 349

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY++AS+ LEAG+MVMN D S+PSTS
Sbjct: 307 TYIIASHQLEAGKMVMNCDWSKPSTS 332


>sp|P92812|RM02_ORYSJ 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2
          Length = 502

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY+LAS+ LEAG MV+N D S+PS S
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKS 306


>sp|Q2F969|RM02_ORYSI 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2
          Length = 502

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY+LAS+ LEAG MV+N D S+PS S
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKS 306


>sp|P0C8K6|RM02_ORYSA 60S ribosomal protein L2, mitochondrial
           OS=Oryza sativa GN=RPL2 PE=2 SV=1
          Length = 502

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 17/26 (65%), Positives = 21/26 (80%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY+LAS+ LEAG MV+N D S+PS S
Sbjct: 281 TYILASHQLEAGNMVINCDCSKPSKS 306


>sp|P26859|RM02_MARPO 60S ribosomal protein L2, mitochondrial
           OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2
          Length = 501

 Score = 33.1 bits (74), Expect = 0.57
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTSFN 65
           TY+LAS  LE G  VMN+  S+PST  N
Sbjct: 283 TYILASENLEVGNTVMNFHGSKPSTLLN 310


>sp|Q5HT08|ACPS_CAMJR Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni (strain RM1221) GN=acpS PE=3
           SV=1
          Length = 115

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 350 FAAKVLSPQVSLYFLKNPAVLTGIWLGRPSVSGA 451
           F  K LSP+  +  +KNPA L G+W  + + S A
Sbjct: 24  FLDKFLSPKEQI-LIKNPATLAGLWAAKEAASKA 56


>sp|A1W123|ACPS_CAMJJ Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
           (strain 81-176) GN=acpS PE=3 SV=1
          Length = 115

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 350 FAAKVLSPQVSLYFLKNPAVLTGIWLGRPSVSGA 451
           F  K LSP+  +  +KNPA L G+W  + + S A
Sbjct: 24  FLDKFLSPKEQI-LIKNPATLAGLWAAKEAASKA 56


>sp|A7H5D0|ACPS_CAMJD Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni subsp. doylei (strain ATCC
           BAA-1458 / RM4099 / 269.97) GN=acpS PE=3 SV=1
          Length = 115

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 350 FAAKVLSPQVSLYFLKNPAVLTGIWLGRPSVSGA 451
           F  K LSP+  +  +KNPA L G+W  + + S A
Sbjct: 24  FLDKFLSPKEQI-LIKNPATLAGLWAAKEAASKA 56


>sp|A8FN84|ACPS_CAMJ8 Holo-[acyl-carrier-protein] synthase
           OS=Campylobacter jejuni subsp. jejuni serotype O:6
           (strain 81116 / NCTC 11828) GN=acpS PE=3 SV=1
          Length = 115

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 350 FAAKVLSPQVSLYFLKNPAVLTGIWLGRPSVSGA 451
           F  K LSP+  +  +KNPA L G+W  + + S A
Sbjct: 24  FLDKFLSPKEQI-LIKNPATLAGLWAAKEAASKA 56
tr_hit_id A5BK62
Definition tr|A5BK62|A5BK62_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 48
Score (bit) 42.4
E-value 0.012
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917393|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C06.
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BK62|A5BK62_VITVI Putative uncharacterized protein OS=Vitis...    42   0.012
tr|Q6YSN2|Q6YSN2_BRANA Ribosomal protein L2 OS=Brassica napus GN...    39   0.100
tr|Q5M9S7|Q5M9S7_TOBAC Ribosomal protein L2 OS=Nicotiana tabacum...    39   0.100
tr|Q40600|Q40600_OENBE 70s mitochondrial ribosomal protein L2 OS...    39   0.100
tr|B6VJV4|B6VJV4_VITVI Ribosomal protein L2 OS=Vitis vinifera GN...    39   0.100
tr|Q1XGA1|Q1XGA1_PHYPA Ribosomal protein L2 OS=Physcomitrella pa...    39   0.17 
tr|B0BLF2|B0BLF2_CYCTA Ribosomal protein L2 OS=Cycas taitungensi...    36   1.1  

>tr|A5BK62|A5BK62_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029794 PE=4 SV=1
          Length = 336

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = -1

Query: 214 RPIAHAQFRNSSPNSNGPV*ANTYVLASY*LEAGRMVMNYD*SRPSTS 71
           +PI       +      PV  NTY++AS+ LEAG+MVMN D S+PSTS
Sbjct: 278 KPIGEGPKDGACKVDRAPV-VNTYIIASHQLEAGKMVMNCDWSKPSTS 324


>tr|Q6YSN2|Q6YSN2_BRANA Ribosomal protein L2 OS=Brassica napus
           GN=rpl2 PE=4 SV=1
          Length = 349

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY++AS+ LEAG+MVMN D S+PSTS
Sbjct: 307 TYIIASHQLEAGKMVMNCDWSKPSTS 332


>tr|Q5M9S7|Q5M9S7_TOBAC Ribosomal protein L2 OS=Nicotiana tabacum
           GN=rpl2 PE=4 SV=1
          Length = 331

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY++AS+ LEAG+MVMN D S+PSTS
Sbjct: 294 TYIIASHQLEAGKMVMNCDWSKPSTS 319


>tr|Q40600|Q40600_OENBE 70s mitochondrial ribosomal protein L2
           OS=Oenothera bertiana GN=rp12 PE=4 SV=1
          Length = 332

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY++AS+ LEAG+MVMN D S+PSTS
Sbjct: 295 TYIIASHQLEAGKMVMNCDWSKPSTS 320


>tr|B6VJV4|B6VJV4_VITVI Ribosomal protein L2 OS=Vitis vinifera
           GN=rpl2 PE=4 SV=1
          Length = 334

 Score = 39.3 bits (90), Expect = 0.100
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTS 71
           TY++AS+ LEAG+MVMN D S+PSTS
Sbjct: 297 TYIIASHQLEAGKMVMNCDWSKPSTS 322


>tr|Q1XGA1|Q1XGA1_PHYPA Ribosomal protein L2 OS=Physcomitrella
           patens GN=rpl2 PE=4 SV=1
          Length = 463

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTSFN 65
           TY+LAS  LEAG+ VMN D S+PSTSF+
Sbjct: 226 TYILASDQLEAGKTVMNCDWSKPSTSFD 253


>tr|B0BLF2|B0BLF2_CYCTA Ribosomal protein L2 OS=Cycas taitungensis
           GN=rpl2 PE=4 SV=1
          Length = 477

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/28 (60%), Positives = 21/28 (75%)
 Frame = -1

Query: 148 TYVLASY*LEAGRMVMNYD*SRPSTSFN 65
           TY+ A +   AG+MVMN D S+PSTSFN
Sbjct: 250 TYISAGHQSGAGKMVMNCDWSKPSTSFN 277