| BP917394 |
| Clone id |
YMU001_000100_C07 |
| Library |
YMU01 |
| Length |
558 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000100_C07. |
| Accession |
BP917394 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
TGTGCTGGCGACCCAGGTTGGGAAAGACTTTCTATGAGACTTGAGAGCAGAATTTTCCTT
CTTGGGTTGCTCCTTAGTAGTGTTGCCATCGCTTTTGCAAACTGCATAGTAGGCAAACCA
GAAGAAAAAATACTCAAAGGTATCGAGTTGCACCTGTGAAGCGTCCACTTGGAATTGGCT
TCATGCGGTCCGTGAAGAGATTTGGCACATGTAAGGAAGACTGTGCTCTCTTGGGAGAAT
GCGAGGAAGTGGGCATGCCCCTGGAGTACATGCTGCACCCAGCCCGGGAGTCTCTCTGTT
GGAAAAAAGAAGCGCAAAGAGGAGTTTAGCTTGTCCAATTTGAGCAAAGAATTGAAGAGG
ACACCTGAGGGAGAGAGCAGAGAGATAAGGGCGTTGGCAGCGACATCGTTAGGTGACGAC
GAGACAACAGAGAGCCACCCTTGCGACGAAGAGGAAGGTGCAGACGGCAAATGCGTCGAA
GTTTAGGGTAACGAAGAGGGAAGGGCGCCTTCTTGCTCCTGGAAGCCGAAAATCTTCTGC
AAAAGAGTTGGTAGAACA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q66KE9 |
| Definition |
sp|Q66KE9|F161A_XENLA UPF0564 protein FAM161A OS=Xenopus laevis |
| Align length |
40 |
| Score (bit) |
31.6 |
| E-value |
2.6 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917394|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C07.
(540 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q66KE9|F161A_XENLA UPF0564 protein FAM161A OS=Xenopus laevis ... 32 2.6
sp|P48234|NOL10_YEAST Ribosome biogenesis protein ENP2 OS=Saccha... 31 3.4
sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis t... 31 3.4
sp|Q23525|YWIE_CAEEL Uncharacterized protein ZK546.14 OS=Caenorh... 31 4.5
sp|Q60829|PPR1B_MOUSE Protein phosphatase 1 regulatory subunit 1... 31 4.5
sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4 OS=Coccidio... 31 4.5
sp|P36877|2ABB_RAT Serine/threonine-protein phosphatase 2A 55 kD... 30 5.8
sp|Q00006|2ABB_RABIT Serine/threonine-protein phosphatase 2A 55 ... 30 5.8
sp|Q5R4A2|2ABB_PONAB Serine/threonine-protein phosphatase 2A 55 ... 30 5.8
sp|P54614|2ABB_PIG Serine/threonine-protein phosphatase 2A 55 kD... 30 5.8
sp|Q6ZWR4|2ABB_MOUSE Serine/threonine-protein phosphatase 2A 55 ... 30 5.8
sp|Q4R8L3|2ABB_MACFA Serine/threonine-protein phosphatase 2A 55 ... 30 5.8
sp|Q00005|2ABB_HUMAN Serine/threonine-protein phosphatase 2A 55 ... 30 5.8
sp|Q5E9Q7|2ABB_BOVIN Serine/threonine-protein phosphatase 2A 55 ... 30 5.8
sp|O15381|NVL_HUMAN Nuclear valosin-containing protein-like OS=H... 30 7.6
sp|P18444|MYCN_CHICK N-myc proto-oncogene protein OS=Gallus gall... 30 7.6
sp|P36016|LHS1_YEAST Heat shock protein 70 homolog LHS1 OS=Sacch... 30 7.6
>sp|Q66KE9|F161A_XENLA UPF0564 protein FAM161A OS=Xenopus laevis
GN=fam161a PE=2 SV=1
Length = 647
Score = 31.6 bits (70), Expect = 2.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 346 KELKRTPEGESREIRALAATSLGDDETTESHPCDEEEGAD 465
+E K+ P+GES E LA L DDE + + C+ EE +
Sbjct: 594 REEKKIPQGESTE-GTLALEDLLDDEEDDKYDCESEEAEE 632
>sp|P48234|NOL10_YEAST Ribosome biogenesis protein ENP2
OS=Saccharomyces cerevisiae GN=ENP2 PE=1 SV=1
Length = 707
Score = 31.2 bits (69), Expect = 3.4
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Frame = +1
Query: 322 EFSLSNLSKELKRTPEGESREIRALAATSLGDDETT-----------ESHPCDEEEGAD 465
+F N K +K T EG ++ IRAL A D+E E DEEE D
Sbjct: 499 DFKQLNPVKSIKETEEGAAKRIRALTAAEESDEERIAMKDGRGHYDYEDEESDEEESDD 557
>sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis
thaliana GN=BHLH12 PE=1 SV=1
Length = 526
Score = 31.2 bits (69), Expect = 3.4
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 250 WACPWSTCCTQPGSLSVGK-------KKRKEEFSLSNLSKELKRTPEGESREIRALAATS 408
+A WS+ TQPG L G+ KKRK+ + S+ L++ S+E+R L +
Sbjct: 38 YAIFWSSSLTQPGVLEWGEGCYNGDMKKRKKSYE-SHYKYGLQK-----SKELRKLYLSM 91
Query: 409 L-GDDETTESHPCDEEEGADGKC 474
L GD TT S D D C
Sbjct: 92 LEGDSGTTVSTTHDNLNDDDDNC 114
>sp|Q23525|YWIE_CAEEL Uncharacterized protein ZK546.14
OS=Caenorhabditis elegans GN=ZK546.14 PE=2 SV=1
Length = 472
Score = 30.8 bits (68), Expect = 4.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 298 VGKKKRKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDETTESHP 441
V KK++KEE S + E PEG + + A + S ++E T S P
Sbjct: 152 VAKKQKKEESSDDDEDSEDGEEPEGNNGAVEAEDSDSTDEEEETPSKP 199
>sp|Q60829|PPR1B_MOUSE Protein phosphatase 1 regulatory subunit 1B
OS=Mus musculus GN=Ppp1r1b PE=1 SV=2
Length = 194
Score = 30.8 bits (68), Expect = 4.5
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 328 SLSNLSKELKRTPEGESREIRALAATSLGDDETTESHPCDEEEGADGKCVEV*GNEEGRA 507
++SNLS+ E E E+R L DDE E DEEE + + ++ G+
Sbjct: 87 TISNLSENQASEEEDELGELRELGYPQ-EDDEEDEDEEEDEEEDSQAEVLKGSRGTVGQK 145
Query: 508 PSC 516
P+C
Sbjct: 146 PTC 148
>sp|Q1EB31|DBP4_COCIM ATP-dependent RNA helicase DBP4
OS=Coccidioides immitis GN=DBP4 PE=3 SV=1
Length = 806
Score = 30.8 bits (68), Expect = 4.5
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +1
Query: 304 KKKRKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDETTESHPCDEEEGA--DGKCV 477
++ R + ++K+ KR + E R RA A D P +E+EG D
Sbjct: 687 ERTRLADIRDKEIAKQKKREKK-EKRRARARAEREAEDGPVAVLAPYEEDEGLREDDFSA 745
Query: 478 EV*GNEEGRAPSCSWKPKIF 537
E G+E+GRAP + K F
Sbjct: 746 EDRGSEDGRAPPSKKQKKWF 765
>sp|P36877|2ABB_RAT Serine/threonine-protein phosphatase 2A 55 kDa
regulatory subunit B beta isoform OS=Rattus norvegicus
GN=Ppp2r2b PE=2 SV=2
Length = 443
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 280 QPGSLSVGKKKRKEEFSLSNL--SKELKRTPEGESREIRALAATS 408
+P + VG K+RK+E S+ +L SK++ T S I A+AAT+
Sbjct: 389 KPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATN 433
>sp|Q00006|2ABB_RABIT Serine/threonine-protein phosphatase 2A 55 kDa
regulatory subunit B beta isoform (Fragment)
OS=Oryctolagus cuniculus GN=PPP2R2B PE=2 SV=1
Length = 413
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 280 QPGSLSVGKKKRKEEFSLSNL--SKELKRTPEGESREIRALAATS 408
+P + VG K+RK+E S+ +L SK++ T S I A+AAT+
Sbjct: 359 KPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATN 403
>sp|Q5R4A2|2ABB_PONAB Serine/threonine-protein phosphatase 2A 55 kDa
regulatory subunit B beta isoform OS=Pongo abelii
GN=PPP2R2B PE=2 SV=1
Length = 443
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 280 QPGSLSVGKKKRKEEFSLSNL--SKELKRTPEGESREIRALAATS 408
+P + VG K+RK+E S+ +L SK++ T S I A+AAT+
Sbjct: 389 KPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATN 433
>sp|P54614|2ABB_PIG Serine/threonine-protein phosphatase 2A 55 kDa
regulatory subunit B beta isoform OS=Sus scrofa
GN=PPP2R2B PE=2 SV=1
Length = 443
Score = 30.4 bits (67), Expect = 5.8
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 280 QPGSLSVGKKKRKEEFSLSNL--SKELKRTPEGESREIRALAATS 408
+P + VG K+RK+E S+ +L SK++ T S I A+AAT+
Sbjct: 389 KPRKVCVGGKRRKDEISVDSLDFSKKILHTAWHPSENIIAVAATN 433
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9U4C0 |
| Definition |
tr|A9U4C0|A9U4C0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
71 |
| Score (bit) |
36.6 |
| E-value |
0.86 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917394|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C07.
(540 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9U4C0|A9U4C0_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.86
tr|Q4PI38|Q4PI38_USTMA Putative uncharacterized protein OS=Ustil... 36 1.1
tr|A1D534|A1D534_NEOFI Putative uncharacterized protein OS=Neosa... 36 1.5
tr|B2VX70|B2VX70_PYRTR Predicted protein OS=Pyrenophora tritici-... 34 5.7
tr|Q98GN5|Q98GN5_RHILO Mll3244 protein OS=Rhizobium loti GN=mll3... 33 7.4
tr|Q66Z42|Q66Z42_BORBU Putative uncharacterized protein (Fragmen... 33 7.4
tr|Q66Z40|Q66Z40_BORBU Putative uncharacterized protein (Fragmen... 33 7.4
tr|Q66Z38|Q66Z38_BORBU Putative uncharacterized protein (Fragmen... 33 7.4
tr|Q1W5K5|Q1W5K5_BORBU Putative uncharacterized protein (Fragmen... 33 7.4
tr|Q70PK2|Q70PK2_CRAGI Monoamine oxidase A OS=Crassostrea gigas ... 33 7.4
tr|O50774|O50774_BORBU Putative uncharacterized protein OS=Borre... 33 9.7
tr|Q66Z45|Q66Z45_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q66Z43|Q66Z43_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q66Z31|Q66Z31_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q66Z28|Q66Z28_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q66Z26|Q66Z26_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q66Z16|Q66Z16_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q1W5L0|Q1W5L0_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q1W5K9|Q1W5K9_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q1W5K8|Q1W5K8_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q1W5K7|Q1W5K7_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
tr|Q1W5K4|Q1W5K4_BORBU Putative uncharacterized protein (Fragmen... 33 9.7
>tr|A9U4C0|A9U4C0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_156144 PE=4 SV=1
Length = 586
Score = 36.6 bits (83), Expect = 0.86
Identities = 25/71 (35%), Positives = 32/71 (45%)
Frame = -2
Query: 410 NDVAANALISLLSPSGVXXXXXXXXXXXXXXLRFFFPTERLPGWVQHVLQGHAHFLAFSQ 231
N+ ALISLLSP G +R+ FP ERLP WV+++L SQ
Sbjct: 70 NEATTRALISLLSPRG-SLFSSLLAVDKENFVRYVFPMERLPEWVRNLL---------SQ 119
Query: 230 ESTVFLTCAKS 198
E + C S
Sbjct: 120 EKGAHILCQVS 130
>tr|Q4PI38|Q4PI38_USTMA Putative uncharacterized protein OS=Ustilago
maydis GN=UM00225.1 PE=4 SV=1
Length = 1014
Score = 36.2 bits (82), Expect = 1.1
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 247 KWACPWSTCCTQPGSLSVGKKKRKEEFSLSN-LSKELKRTPEGESREIRALAATSLGDDE 423
+W P +T + P L+ K E S SN L+ L+R+P + E + +A+S
Sbjct: 345 RWTAPSATQASPPSKLATPAKVSTSESSGSNPLAASLQRSPSKTNPEETSPSASSRRAAP 404
Query: 424 TTESHPCDEEEGADGKCVEV*GNEEGRAPSCS 519
+ S+ +EE G+ C E R PS +
Sbjct: 405 ASSSYRANEEAGSRSTC-----QERNRRPSAA 431
>tr|A1D534|A1D534_NEOFI Putative uncharacterized protein
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
NRRL 181) GN=NFIA_022380 PE=4 SV=1
Length = 178
Score = 35.8 bits (81), Expect = 1.5
Identities = 25/68 (36%), Positives = 32/68 (47%)
Frame = +1
Query: 304 KKKRKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDETTESHPCDEEEGADGKCVEV 483
K K KE SN S KR P GES ++RA A L + +H E+ + K EV
Sbjct: 92 KSKAKEAGESSNSSSPAKRKPAGESSKVRAKKARVLKESVLESAHRMIEQRLSPVKEEEV 151
Query: 484 *GNEEGRA 507
EE +A
Sbjct: 152 SDAEEEKA 159
>tr|B2VX70|B2VX70_PYRTR Predicted protein OS=Pyrenophora
tritici-repentis (strain Pt-1C-BFP) GN=PTRG_03116 PE=4
SV=1
Length = 140
Score = 33.9 bits (76), Expect = 5.7
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Frame = +1
Query: 238 NARKWACPWSTCCTQPGS--------------LSVGKKKRKEEFSLSNLSKELKRTPEGE 375
N++ + PW CC + GS ++ G+ K+K + K+ + + E
Sbjct: 9 NSKSNSLPWKACCMESGSGRPDSLTEELIPVRVTRGEAKKKA------IKKDAEVEVKKE 62
Query: 376 SREIRALAATSLGDDETTESHPCDEEEGAD 465
+ + L A++ D E TES D E+G +
Sbjct: 63 KKTMEVLIASTREDYEATESQDGDMEDGGE 92
>tr|Q98GN5|Q98GN5_RHILO Mll3244 protein OS=Rhizobium loti GN=mll3244
PE=4 SV=1
Length = 967
Score = 33.5 bits (75), Expect = 7.4
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 172 ELASCGP*RDLAHVRKTVLSWENARKWACPWSTCCTQPGSLSVGKKKRKEEFSLSNLSKE 351
+L++ GP D++ VR L A +W S TQPG + +K R +F ++ L
Sbjct: 413 QLSAGGPVFDISGVRDVSLEEREAERWQAYVSRLETQPGIIVAEQKIRDGQFYVAGLRDP 472
Query: 352 LKRTPE 369
L P+
Sbjct: 473 LGADPQ 478
Score = 33.5 bits (75), Expect = 7.4
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +1
Query: 172 ELASCGP*RDLAHVRKTVLSWENARKWACPWSTCCTQPGSLSVGKKKRKEEFSLSNLSKE 351
+L++ GP D++ VR L A +W S TQPG + +K R +F ++ L
Sbjct: 549 QLSAGGPVFDISGVRDVSLEEREAERWQAYVSRLETQPGIIVAEQKIRDGQFYVAGLRDP 608
Query: 352 LKRTPE 369
L P+
Sbjct: 609 LGADPQ 614
>tr|Q66Z42|Q66Z42_BORBU Putative uncharacterized protein (Fragment)
OS=Borrelia burgdorferi GN=BBJ19 PE=4 SV=1
Length = 324
Score = 33.5 bits (75), Expect = 7.4
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 304 KKKRKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDET 426
KKK K+EF+ +NL K LK PE ++EI ++A + D+T
Sbjct: 187 KKKNKKEFTKNNLEKRLK-LPEEMTKEIISIAKKTKNPDKT 226
>tr|Q66Z40|Q66Z40_BORBU Putative uncharacterized protein (Fragment)
OS=Borrelia burgdorferi GN=BBJ19 PE=4 SV=1
Length = 322
Score = 33.5 bits (75), Expect = 7.4
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 304 KKKRKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDET 426
KKK K+EF+ +NL K LK PE ++EI ++A + D+T
Sbjct: 185 KKKNKKEFTKNNLEKRLK-LPEEMTKEIISIAKKTKNPDKT 224
>tr|Q66Z38|Q66Z38_BORBU Putative uncharacterized protein (Fragment)
OS=Borrelia burgdorferi GN=BBJ19 PE=4 SV=1
Length = 319
Score = 33.5 bits (75), Expect = 7.4
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 304 KKKRKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDET 426
KKK K+EF+ +NL K LK PE ++EI ++A + D+T
Sbjct: 182 KKKNKKEFTKNNLEKRLK-LPEEMTKEIISIAKKTKNPDKT 221
>tr|Q1W5K5|Q1W5K5_BORBU Putative uncharacterized protein (Fragment)
OS=Borrelia burgdorferi GN=BBJ19 PE=4 SV=1
Length = 316
Score = 33.5 bits (75), Expect = 7.4
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 304 KKKRKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDET 426
KKK K+EF+ +NL K LK PE ++EI ++A + D+T
Sbjct: 179 KKKNKKEFTKNNLEKRLK-LPEEMTKEIISIAKKTKNPDKT 218
>tr|Q70PK2|Q70PK2_CRAGI Monoamine oxidase A OS=Crassostrea gigas
GN=maoA PE=2 SV=1
Length = 521
Score = 33.5 bits (75), Expect = 7.4
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +1
Query: 313 RKEEFSLSNLSKELKRTPEGESREIRALAATSLGDDETTESHP-CDEEEGADGKCVEV*G 489
+K FS +N +E K G S++I A LG+D SHP C + DG V V G
Sbjct: 199 QKRIFSTTNGGQERKFV--GGSQQISKRIAEKLGNDRVLLSHPVCHISQTTDGVTVSVTG 256
Query: 490 NEEGRA 507
++ RA
Sbjct: 257 GQQFRA 262
|