NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917395
Clone id YMU001_000100_C08
Library
Length 189
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTTCTCGTTCAAGTAGATGGTGATGAATCCGGCAAAGAGGCCCACAATGGAGGCTTCAA
TGGTGCCCCAAGCCATTTCCAAGGGGACCGCAATCTCGGGTATGAAAGACCAAAACAGAA
GAAAGAAGATCAGGGTAGCAGAGTACCTGAGGAGCTTGATTTTGTAGCGTACCAAGCGCA
TGGAAGGGG
■■Homology search results ■■ -
sp_hit_id A4TSG5
Definition sp|A4TSG5|Y3884_YERPP UPF0241 protein YPDSF_3884 OS=Yersinia pestis (strain Pestoides F)
Align length 45
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917395|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C08.
         (189 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4TSG5|Y3884_YERPP UPF0241 protein YPDSF_3884 OS=Yersinia pes...    30   2.9  
sp|Q1C238|Y3522_YERPA UPF0241 protein YPA_3522 OS=Yersinia pesti...    30   2.9  
sp|Q1CN50|Y247_YERPN UPF0241 protein YPN_0247 OS=Yersinia pestis...    30   2.9  
sp|A7FCP6|Y023_YERP3 UPF0241 protein YpsIP31758_0023 OS=Yersinia...    30   2.9  
sp|Q66GG2|Y020_YERPS UPF0241 protein YPTB0020 OS=Yersinia pseudo...    30   2.9  
sp|Q8ZJR9|Y020_YERPE UPF0241 protein YPO0020/y3808/YP_0021 OS=Ye...    30   2.9  
sp|Q4L970|COPA_STAHJ Copper-exporting P-type ATPase A OS=Staphyl...    30   2.9  
sp|P15711|104K_THEPA 104 kDa microneme/rhoptry antigen OS=Theile...    30   2.9  
sp|Q6AYU3|DNJB6_RAT DnaJ homolog subfamily B member 6 OS=Rattus ...    29   6.5  
sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel...    29   8.5  

>sp|A4TSG5|Y3884_YERPP UPF0241 protein YPDSF_3884 OS=Yersinia pestis
           (strain Pestoides F) GN=YPDSF_3884 PE=3 SV=1
          Length = 188

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 23  DESGKEAHNGGFNGAPSHFQGDRNLGYERPKQKKEDQGSRVPEEL 157
           D   ++ H+G  +GA ++ +G    G+ + ++K    GS+VP  L
Sbjct: 37  DRKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPL 81


>sp|Q1C238|Y3522_YERPA UPF0241 protein YPA_3522 OS=Yersinia pestis
           bv. Antiqua (strain Antiqua) GN=YPA_3522 PE=3 SV=1
          Length = 188

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 23  DESGKEAHNGGFNGAPSHFQGDRNLGYERPKQKKEDQGSRVPEEL 157
           D   ++ H+G  +GA ++ +G    G+ + ++K    GS+VP  L
Sbjct: 37  DRKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPL 81


>sp|Q1CN50|Y247_YERPN UPF0241 protein YPN_0247 OS=Yersinia pestis
           bv. Antiqua (strain Nepal516) GN=YPN_0247 PE=3 SV=1
          Length = 188

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 23  DESGKEAHNGGFNGAPSHFQGDRNLGYERPKQKKEDQGSRVPEEL 157
           D   ++ H+G  +GA ++ +G    G+ + ++K    GS+VP  L
Sbjct: 37  DRKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPL 81


>sp|A7FCP6|Y023_YERP3 UPF0241 protein YpsIP31758_0023 OS=Yersinia
           pseudotuberculosis serotype O:1b (strain IP 31758)
           GN=YpsIP31758_0023 PE=3 SV=1
          Length = 188

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 23  DESGKEAHNGGFNGAPSHFQGDRNLGYERPKQKKEDQGSRVPEEL 157
           D   ++ H+G  +GA ++ +G    G+ + ++K    GS+VP  L
Sbjct: 37  DRKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPL 81


>sp|Q66GG2|Y020_YERPS UPF0241 protein YPTB0020 OS=Yersinia
           pseudotuberculosis GN=YPTB0020 PE=3 SV=1
          Length = 188

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 23  DESGKEAHNGGFNGAPSHFQGDRNLGYERPKQKKEDQGSRVPEEL 157
           D   ++ H+G  +GA ++ +G    G+ + ++K    GS+VP  L
Sbjct: 37  DRKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPL 81


>sp|Q8ZJR9|Y020_YERPE UPF0241 protein YPO0020/y3808/YP_0021
           OS=Yersinia pestis GN=YPO0020 PE=3 SV=1
          Length = 188

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 23  DESGKEAHNGGFNGAPSHFQGDRNLGYERPKQKKEDQGSRVPEEL 157
           D   ++ H+G  +GA ++ +G    G+ + ++K    GS+VP  L
Sbjct: 37  DRKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPL 81


>sp|Q4L970|COPA_STAHJ Copper-exporting P-type ATPase A
           OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copA
           PE=3 SV=1
          Length = 795

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query: 89  RNLGYE-RPKQKKEDQGSRVPEEL 157
           RNLGY+ +PKQ +EDQ +R  +EL
Sbjct: 131 RNLGYDAQPKQSEEDQATRKQQEL 154


>sp|P15711|104K_THEPA 104 kDa microneme/rhoptry antigen OS=Theileria
           parva GN=TP04_0437 PE=2 SV=1
          Length = 924

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 20  GDESGKEAHNGGFNGAPSHFQGDRNLGYERPKQKKEDQGSRVP 148
           GD+ G E H G   G+ S  +G +    ++P   +E + S++P
Sbjct: 523 GDKEGSEGHKGPSKGSDSSKEGKKPGSGKKPGPAREHKPSKIP 565


>sp|Q6AYU3|DNJB6_RAT DnaJ homolog subfamily B member 6 OS=Rattus
           norvegicus GN=Dnajb6 PE=2 SV=1
          Length = 357

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 23  DESGKEAHNGGFNGAPSHFQGDRNLG--YERPKQK-KEDQGSRVPEELDF 163
           D+ GKE  NGG  G  SHF      G  +  P    +E  G R P   DF
Sbjct: 66  DKYGKEGLNGGGGGGGSHFDSPFEFGFTFRNPDDVFREFFGGRDPFSFDF 115


>sp|O00555|CAC1A_HUMAN Voltage-dependent P/Q-type calcium channel
            subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2
          Length = 2505

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +2

Query: 20   GDESGKEAHNGGF------NGAPSHFQGD--RNLGYERPKQKKEDQGSRVP 148
            G E   E  +GG       +GAP+ ++GD  R     R +++KE+QGS VP
Sbjct: 989  GGEGEGEGPDGGERRRRHRHGAPATYEGDARREDKERRHRRRKENQGSGVP 1039
tr_hit_id A9TS26
Definition tr|A9TS26|A9TS26_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 62
Score (bit) 68.9
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917395|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C08.
         (189 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TS26|A9TS26_PHYPA Predicted protein OS=Physcomitrella paten...    69   1e-10
tr|A8NEM4|A8NEM4_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   1.4  
tr|B0SQI6|B0SQI6_LEPBP Putative ribonuclease BN; putative membra...    33   7.2  
tr|B0SHD6|B0SHD6_LEPBA Ribonuclease BN OS=Leptospira biflexa ser...    33   7.2  

>tr|A9TS26|A9TS26_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171612 PE=4 SV=1
          Length = 284

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 32/62 (51%), Positives = 44/62 (70%)
 Frame = -3

Query: 187 PSMRLVRYKIKLLRYSATLIFFLLFWSFIPEIAVPLEMAWGTIEASIVGLFAGFITIYLN 8
           P MR  RYKIKLLRY+AT ++ L F+ FIPE+     + + ++E  IVG+ +G IT+YLN
Sbjct: 84  PIMRKARYKIKLLRYAATSVYILFFYRFIPELNEAYPVNFFSLECLIVGILSGLITVYLN 143

Query: 7   EN 2
           EN
Sbjct: 144 EN 145


>tr|A8NEM4|A8NEM4_COPC7 Predicted protein OS=Coprinopsis cinerea
           (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_01135 PE=4
           SV=1
          Length = 843

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 20  GDESGKEAHNGGFNGAPSHFQGDRNLGYER-PKQKKEDQGSRVPEELDFVAYQAHGR 187
           GD  G E   GGF G  +   GD   G ++ P + +E  GSR P+     A    GR
Sbjct: 242 GDRGGDEDGTGGFEGGQAENDGDNGFGDDQPPPEDEEGNGSRSPQTRRDDAQSGGGR 298


>tr|B0SQI6|B0SQI6_LEPBP Putative ribonuclease BN; putative membrane
           protein OS=Leptospira biflexa serovar Patoc (strain
           Patoc 1 / ATCC 23582 / Paris) GN=LEPBI_I1537 PE=4 SV=1
          Length = 794

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = -3

Query: 154 LLRYSATLIFFLLFWSFIPEIAVPLEMAWGTIEASIVGL-----FAGFITIYL 11
           LL   +  +FFLL ++ IP   VP++ +  +I A++ GL     F GFI IYL
Sbjct: 561 LLPLLSLWLFFLLIFNIIPNTKVPIKAS--SIGAAVTGLILILFFWGFINIYL 611


>tr|B0SHD6|B0SHD6_LEPBA Ribonuclease BN OS=Leptospira biflexa
           serovar Patoc (strain Patoc 1 / Ames) GN=LBF_1484 PE=4
           SV=1
          Length = 794

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = -3

Query: 154 LLRYSATLIFFLLFWSFIPEIAVPLEMAWGTIEASIVGL-----FAGFITIYL 11
           LL   +  +FFLL ++ IP   VP++ +  +I A++ GL     F GFI IYL
Sbjct: 561 LLPLLSLWLFFLLIFNIIPNTKVPIKAS--SIGAAVTGLILILFFWGFINIYL 611