| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917397|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C10.
(532 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplast... 158 2e-38
sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplas... 156 5e-38
sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondr... 144 2e-34
sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondri... 144 3e-34
sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondri... 141 2e-33
sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplast... 132 8e-31
sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplast... 130 5e-30
sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplast... 129 7e-30
sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplas... 129 7e-30
sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplas... 125 1e-28
sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial ... 49 2e-05
sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial ... 48 3e-05
sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial ... 44 5e-04
sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial ... 39 0.012
sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial ... 38 0.026
sp|Q8CXK6|DNLJ_OCEIH DNA ligase OS=Oceanobacillus iheyensis GN=l... 32 1.9
sp|Q8XHL9|SYG_CLOPE Glycyl-tRNA synthetase OS=Clostridium perfri... 31 3.2
sp|Q8AXP2|CCD80_CHICK Coiled-coil domain-containing protein 80 O... 31 4.2
sp|Q9ULD9|ZN608_HUMAN Zinc finger protein 608 OS=Homo sapiens GN... 30 9.4
sp|P27570|TOP2_CRIFA DNA topoisomerase 2 OS=Crithidia fasciculat... 30 9.4
sp|Q58635|SYP_METJA Prolyl-tRNA synthetase OS=Methanocaldococcus... 30 9.4
sp|Q10299|YD45_SCHPO Uncharacterized protein C22H10.05c OS=Schiz... 30 9.5
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Nicotiana sylvestris
GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 158 bits (399), Expect = 2e-38
Identities = 80/183 (43%), Positives = 114/183 (62%), Gaps = 7/183 (3%)
Frame = +3
Query: 3 EAVEQETEIFRIMSK-------KGKKRKQGEVAPSPADVALQMNVEKLMKEQNVHRLDKT 161
+A+EQE I + K K K+++ GE + L+ V LMK+Q + + +
Sbjct: 298 DAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQE-KLRKKVTNLMKKQKLRAVGQI 356
Query: 162 VRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITA 341
VRR + KPWG + KVGSRLID+L+ A+I PP +Q D P+IRPA H RT+
Sbjct: 357 VRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAV-DPPDIRPAFVHSVRTVAK 415
Query: 342 KKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMR 521
+ K +R+ G++ CD LV+ LE++A+ + +PYMPMLV PVKWT Y KGG++ L SY+MR
Sbjct: 416 ETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 475
Query: 522 THG 530
THG
Sbjct: 476 THG 478
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial OS=Nicotiana tabacum
GN=RPOT2-TOM PE=2 SV=2
Length = 1021
Score = 156 bits (395), Expect = 5e-38
Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 7/183 (3%)
Frame = +3
Query: 3 EAVEQETEIFRIMSK-------KGKKRKQGEVAPSPADVALQMNVEKLMKEQNVHRLDKT 161
+A+EQE I + K K K+++ GE + L+ V LMK+Q + + +
Sbjct: 299 DAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQE-KLRKKVTNLMKKQKLRAVGQI 357
Query: 162 VRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITA 341
VRR + KPWG + KVGSRLI++L+ A+I PP +Q D P+IRPA H RT+
Sbjct: 358 VRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAV-DPPDIRPAFLHSVRTVAK 416
Query: 342 KKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMR 521
+ K +R+ G++ CD LV+ LE++A+ + +PYMPMLV PVKWT Y KGG++ L SY+MR
Sbjct: 417 ETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMR 476
Query: 522 THG 530
THG
Sbjct: 477 THG 479
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial
OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 144 bits (364), Expect = 2e-34
Identities = 79/182 (43%), Positives = 109/182 (59%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRK-QGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDKTV 164
EA+E E I R + K K G++ +P D+ L+ V+ LMK+Q + ++ K V
Sbjct: 282 EAIEHEARIHRFLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIV 341
Query: 165 RRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAK 344
++ + KPWG VKVG RLI ILM A+I PP Q + P+IRPA H +T+
Sbjct: 342 KQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLD-DGPPDIRPAFVHTLKTVETM 400
Query: 345 KKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRT 524
K +R+ GV+ CDPLV L+K+A+ + +PYMPMLV P W Y KGGY+ L SY+MRT
Sbjct: 401 KG--SRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRT 458
Query: 525 HG 530
HG
Sbjct: 459 HG 460
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial
OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1
Length = 976
Score = 144 bits (362), Expect = 3e-34
Identities = 76/187 (40%), Positives = 107/187 (57%), Gaps = 11/187 (5%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRKQGEVAPSPADVALQMNVEK-----------LMKEQNVHR 149
EAVEQE I + KK KK + + A+ + V K LM++ + +
Sbjct: 249 EAVEQEVRINSFLQKKNKKNATDKTINTEAENVSEEIVAKETEKARKQVTVLMEKNKLRQ 308
Query: 150 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 329
+ VR+ FKPWG QVKVG+RLI +LM A+I PP Q + P+IRPA K R
Sbjct: 309 VKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAEQFD-DGPPDIRPAFKQNFR 367
Query: 330 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 509
T+T + + +R+ G + CDPLV L+KSA+ + +PY+PML+ P WT Y +G + L S
Sbjct: 368 TVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPS 427
Query: 510 YLMRTHG 530
Y+MRTHG
Sbjct: 428 YVMRTHG 434
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial
OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 141 bits (355), Expect = 2e-33
Identities = 77/182 (42%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRK-QGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDKTV 164
EA+E E I R + K K G++ +P D+ ++ V+ LMK+Q + ++ K V
Sbjct: 282 EAIEHEARIHRFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIV 341
Query: 165 RRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAK 344
++ + KPWG VKVG RLI ILM A+I PP Q + P+IRPA H +T+
Sbjct: 342 KQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLD-DCPPDIRPAFVHTLKTVETM 400
Query: 345 KKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRT 524
K +R+ GV+ CDPLV L+K+A+ + +PYMPMLV P W Y KG Y+ L SY+MRT
Sbjct: 401 KG--SRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRT 458
Query: 525 HG 530
HG
Sbjct: 459 HG 460
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic
OS=Arabidopsis thaliana GN=RPOT3 PE=2 SV=1
Length = 993
Score = 132 bits (333), Expect = 8e-31
Identities = 67/176 (38%), Positives = 104/176 (59%), Gaps = 1/176 (0%)
Frame = +3
Query: 6 AVEQETEIFRIMSKKGKKRKQGEVAPSPADVALQMNVEKLMKEQNVHRLDKTVRRAKEFK 185
A+EQE I + + K L+ V L++ + + K V+ ++ K
Sbjct: 278 AIEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRKRVNSLIRRKRIIDALKVVK-SEGTK 336
Query: 186 PWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAKK-KRFTR 362
PWG Q K+GSRL+++L+ A++ PP++QS + +PE RPA +H +T+T + R
Sbjct: 337 PWGRATQAKLGSRLLELLIEAAYVQPPLTQSG-DSIPEFRPAFRHRFKTVTKYPGSKLVR 395
Query: 363 QIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRTHG 530
+ GV+ CD L+ + L+KSAK + +PY+PMLV P +W Y KGGY+ L SY+MRTHG
Sbjct: 396 RYGVIECDSLLLAGLDKSAKHMLIPYVPMLVPPKRWKGYDKGGYLFLPSYIMRTHG 451
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=RPOT2 PE=2 SV=1
Length = 1011
Score = 130 bits (326), Expect = 5e-30
Identities = 70/182 (38%), Positives = 104/182 (57%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA------LQMNVEKLMKEQNVHRLDKTV 164
+A+EQE I + KK K E + + L+ V +L+K+Q + + K +
Sbjct: 290 DAIEQEIRICTFLDKKKKGDDNEESGGVENETSMKEQDKLRKKVNELIKKQKLSAVRKIL 349
Query: 165 RRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAK 344
+ KPW + ++ KVGSRLI++L+ A+I P Q DLP++RPA H + +
Sbjct: 350 QSHDYTKPWIADVRAKVGSRLIELLVRTAYIQSPADQQDN-DLPDVRPAFVHTFK-VAKG 407
Query: 345 KKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRT 524
R+ GV+ CDPLV LEKS ++ +PYMPMLV P+KW+ Y KG Y+ L SY+M+T
Sbjct: 408 SMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIMKT 467
Query: 525 HG 530
HG
Sbjct: 468 HG 469
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic
OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1
Length = 977
Score = 129 bits (325), Expect = 7e-30
Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 6/181 (3%)
Frame = +3
Query: 6 AVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDKTVRR 170
AVE E I + K K +K A S D++ L+ V+ L+K V + K ++
Sbjct: 258 AVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMK- 316
Query: 171 AKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAKK- 347
++E + WG Q K+G RL+++L A++ PPV QS + P+IRPA +H R T
Sbjct: 317 SEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS-ADTPPDIRPAFRHVFRIATRDPG 375
Query: 348 KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRTH 527
K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L SYLMRTH
Sbjct: 376 KSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTH 435
Query: 528 G 530
G
Sbjct: 436 G 436
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 129 bits (325), Expect = 7e-30
Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 6/181 (3%)
Frame = +3
Query: 6 AVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDKTVRR 170
AVE E I + K K +K A S D++ L+ V+ L+K V + K ++
Sbjct: 258 AVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMK- 316
Query: 171 AKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAKK- 347
++E + WG Q K+G RL+++L A++ PPV QS + P+IRPA +H R T
Sbjct: 317 SEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQS-ADTPPDIRPAFRHVFRIATRDPG 375
Query: 348 KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRTH 527
K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L SYLMRTH
Sbjct: 376 KSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTH 435
Query: 528 G 530
G
Sbjct: 436 G 436
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic
OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 125 bits (314), Expect = 1e-28
Identities = 70/181 (38%), Positives = 105/181 (58%), Gaps = 6/181 (3%)
Frame = +3
Query: 6 AVEQETEIFRIMSKKGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDKTVRR 170
AVE E I + K K +K A S D++ L+ V+ L+K V + K ++
Sbjct: 257 AVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMK- 315
Query: 171 AKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAKK- 347
++E + WG Q K+G RL+++L A++ PV QS + P+IRPA +H + T
Sbjct: 316 SEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQS-ADTPPDIRPAFRHVFKIATRDPG 374
Query: 348 KRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRTH 527
K ++ GV+ CDPLV + ++++ K + +PY+PMLV P KW Y KGGY+ L SYLMRTH
Sbjct: 375 KNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTH 434
Query: 528 G 530
G
Sbjct: 435 G 435
|
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917397|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C10.
(532 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia o... 157 4e-37
tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 155 1e-36
tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 155 1e-36
tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 154 3e-36
tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment) OS... 151 2e-35
tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum a... 150 3e-35
tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis vini... 149 7e-35
tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis vini... 148 1e-34
tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brass... 145 2e-33
tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodiu... 144 4e-33
tr|Q9SYW4|Q9SYW4_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 140 3e-32
tr|O82725|O82725_MAIZE DNA-directed RNA polymerase OS=Zea mays G... 140 3e-32
tr|Q8SBD4|Q8SBD4_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 137 4e-31
tr|Q8L6F9|Q8L6F9_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 137 4e-31
tr|A9TL52|A9TL52_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 137 4e-31
tr|Q84LK5|Q84LK5_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 135 1e-30
tr|Q67UP6|Q67UP6_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 135 1e-30
tr|Q0DAH8|Q0DAH8_ORYSJ DNA-directed RNA polymerase (Fragment) OS... 135 1e-30
tr|Q3EBU8|Q3EBU8_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 132 8e-30
tr|Q0WWN0|Q0WWN0_ARATH DNA-directed RNA polymerase (Fragment) OS... 132 8e-30
tr|Q0WN04|Q0WN04_ARATH DNA-directed RNA polymerase OS=Arabidopsi... 132 8e-30
tr|Q70XR1|Q70XR1_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 132 1e-29
tr|Q70XR0|Q70XR0_HORVD DNA-directed RNA polymerase OS=Hordeum vu... 132 1e-29
tr|Q1KUU5|Q1KUU5_9ROSI Putative uncharacterized protein OS=Cleom... 132 1e-29
tr|A7PFM9|A7PFM9_VITVI DNA-directed RNA polymerase OS=Vitis vini... 131 2e-29
tr|A3BE54|A3BE54_ORYSJ DNA-directed RNA polymerase OS=Oryza sati... 130 4e-29
tr|A2YFP7|A2YFP7_ORYSI DNA-directed RNA polymerase OS=Oryza sati... 130 4e-29
tr|Q41524|Q41524_WHEAT DNA-directed RNA polymerase OS=Triticum a... 128 2e-28
tr|A5B3H8|A5B3H8_VITVI Putative uncharacterized protein OS=Vitis... 125 1e-27
tr|Q8SBD3|Q8SBD3_PHYPA DNA-directed RNA polymerase OS=Physcomitr... 125 2e-27
>tr|Q52GZ4|Q52GZ4_SPIOL DNA-directed RNA polymerase OS=Spinacia
oleracea GN=rpoT2 PE=2 SV=1
Length = 1036
Score = 157 bits (396), Expect = 4e-37
Identities = 81/186 (43%), Positives = 115/186 (61%), Gaps = 10/186 (5%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRKQGEVAPSPADVA----------LQMNVEKLMKEQNVHRL 152
EA+EQE I + K K+K+G+ + P D A L+ NV L+K+Q +
Sbjct: 312 EAIEQEVRIHTFLEKA--KKKKGDRSKKPDDAASDAEIQEQQHLRKNVNNLIKKQKRRQA 369
Query: 153 DKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRT 332
K V + KPWGS + KVGSRLI++L+ A+I PP SQS D P++RPA H ++
Sbjct: 370 LKIVDSQGDLKPWGSETRAKVGSRLIELLIQTAYIQPPASQSAC-DPPDLRPAFVHSLKS 428
Query: 333 ITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSY 512
+ + K+ R+ G++ CDPL+ LEK+ + + +PYMPMLV P KWT Y KG Y+VLRS+
Sbjct: 429 VGPENKKTGRRFGMIECDPLIIKGLEKTPRHIVIPYMPMLVPPEKWTGYDKGAYLVLRSF 488
Query: 513 LMRTHG 530
+MRTHG
Sbjct: 489 VMRTHG 494
>tr|Q84LK6|Q84LK6_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=rpoT1 PE=2 SV=1
Length = 1017
Score = 155 bits (392), Expect = 1e-36
Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 EAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDK 158
EA+E E I + + K K K E +D+A L+ V LMK+Q + ++
Sbjct: 293 EAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRN 352
Query: 159 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 338
V++ KPWG KVGSRLI++++ A+I PP SQS + P+IRPA HE RT+
Sbjct: 353 IVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS-ADGPPDIRPAFTHEMRTVA 411
Query: 339 AKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLM 518
++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L SY+M
Sbjct: 412 REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 471
Query: 519 RTHG 530
RTHG
Sbjct: 472 RTHG 475
>tr|Q6K326|Q6K326_ORYSJ DNA-directed RNA polymerase OS=Oryza sativa
subsp. japonica GN=OSJNBa0069P02.30-1 PE=2 SV=1
Length = 951
Score = 155 bits (392), Expect = 1e-36
Identities = 76/184 (41%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 EAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDK 158
EA+E E I + + K K K E +D+A L+ V LMK+Q + ++
Sbjct: 293 EAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRN 352
Query: 159 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 338
V++ KPWG KVGSRLI++++ A+I PP SQS + P+IRPA HE RT+
Sbjct: 353 IVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQS-ADGPPDIRPAFTHEMRTVA 411
Query: 339 AKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLM 518
++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L SY+M
Sbjct: 412 REQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVM 471
Query: 519 RTHG 530
RTHG
Sbjct: 472 RTHG 475
>tr|Q9XF15|Q9XF15_MAIZE DNA-directed RNA polymerase OS=Zea mays
GN=rpoT1 PE=2 SV=1
Length = 975
Score = 154 bits (388), Expect = 3e-36
Identities = 77/184 (41%), Positives = 114/184 (61%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 EAVEQETEIFRIMSK---KGKKRKQGEVAPSPADVA-----LQMNVEKLMKEQNVHRLDK 158
EA+E E I R + K K K + E ++A L+ V LMK+Q + ++
Sbjct: 251 EAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAVEQQRLRKKVTDLMKKQKLRQVRN 310
Query: 159 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 338
V+ + +PWG KVGSRLID+ + A I PP SQS ++ LP+IRPA +HE RT+
Sbjct: 311 IVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQS-SDGLPDIRPAFRHEMRTMV 369
Query: 339 AKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLM 518
++++ +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L SY+M
Sbjct: 370 KEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVM 429
Query: 519 RTHG 530
RTHG
Sbjct: 430 RTHG 433
>tr|Q70BU3|Q70BU3_HORVU DNA-directed RNA polymerase (Fragment)
OS=Hordeum vulgare GN=rpoTm PE=2 SV=1
Length = 862
Score = 151 bits (382), Expect = 2e-35
Identities = 79/184 (42%), Positives = 112/184 (60%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRKQGE---VAPSPADVA-----LQMNVEKLMKEQNVHRLDK 158
EAVE E I + + K KK + V P +D+A L+ V LMK+Q + ++
Sbjct: 140 EAVEHEVRIHKFLEKTKKKNTKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQVRH 199
Query: 159 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 338
V++ +PWG KVGSRLI++ + A I PP SQS + PEIRPA HE RT+
Sbjct: 200 LVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSG-DSTPEIRPAFTHEMRTVA 258
Query: 339 AKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLM 518
++K +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L SY+M
Sbjct: 259 REQK--SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVM 316
Query: 519 RTHG 530
RTHG
Sbjct: 317 RTHG 320
>tr|Q9MQV1|Q9MQV1_WHEAT DNA-directed RNA polymerase OS=Triticum
aestivum PE=2 SV=1
Length = 1005
Score = 150 bits (380), Expect = 3e-35
Identities = 80/184 (43%), Positives = 113/184 (61%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRKQGE---VAPSPADVA-----LQMNVEKLMKEQNVHRLDK 158
EAVE E I + + K KK + V AD+A L+ V LMK+Q + ++
Sbjct: 282 EAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAKEQERLRKKVTDLMKKQKIRQVRH 341
Query: 159 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 338
V++ +PWG KVGSRLI++ + A I PP SQS + PEIRPA HE RT+
Sbjct: 342 LVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSG-DSTPEIRPAFTHEMRTV- 399
Query: 339 AKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLM 518
A+++R +R+ GV+ CDPLV L+++AK + +PYMPML+ P+ WT Y KG ++ L SY+M
Sbjct: 400 AREQRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVM 459
Query: 519 RTHG 530
RTHG
Sbjct: 460 RTHG 463
>tr|A7PNA5|A7PNA5_VITVI DNA-directed RNA polymerase OS=Vitis
vinifera GN=GSVIVT00021161001 PE=3 SV=1
Length = 978
Score = 149 bits (377), Expect = 7e-35
Identities = 78/182 (42%), Positives = 108/182 (59%), Gaps = 6/182 (3%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRKQ------GEVAPSPADVALQMNVEKLMKEQNVHRLDKTV 164
EA+E E I R M K KK G + L+ V LMK+Q + ++ + V
Sbjct: 256 EAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQQVRQIV 315
Query: 165 RRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAK 344
+R + KPWG VKVGSRLI++L+ A+I PP Q + P+IRPA H +T+ +
Sbjct: 316 KRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLG-DGPPDIRPAFVHTLKTVIKE 374
Query: 345 KKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRT 524
++ TR+ GV+ CDPLV LEK+A+ + +PYMPMLV P+ WT Y KG Y+ L SY+MR
Sbjct: 375 TQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRI 434
Query: 525 HG 530
HG
Sbjct: 435 HG 436
>tr|A7PAG7|A7PAG7_VITVI DNA-directed RNA polymerase OS=Vitis
vinifera GN=GSVIVT00038106001 PE=3 SV=1
Length = 1035
Score = 148 bits (374), Expect = 1e-34
Identities = 76/184 (41%), Positives = 108/184 (58%), Gaps = 8/184 (4%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKR--KQGEVAPSPADVA------LQMNVEKLMKEQNVHRLDK 158
+A+EQE I + K +K+ K V D L+ V LMK+Q +H +
Sbjct: 310 DAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQ 369
Query: 159 TVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTIT 338
V+ KPWG + KVGSRLI++LM A+I PPV + P+IRPA H +T+
Sbjct: 370 IVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVM 429
Query: 339 AKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLM 518
+ K+ R+ GV+ CDPLV LE++A+ + +PY+PMLV P+KWT Y KG ++ L SY+M
Sbjct: 430 REAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVM 489
Query: 519 RTHG 530
RTHG
Sbjct: 490 RTHG 493
>tr|B4YPU8|B4YPU8_BRAOA Putative uncharacterized protein OS=Brassica
oleracea var. alboglabra GN=BoB028L01.020 PE=4 SV=1
Length = 951
Score = 145 bits (365), Expect = 2e-33
Identities = 75/187 (40%), Positives = 106/187 (56%), Gaps = 11/187 (5%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKKRK-----------QGEVAPSPADVALQMNVEKLMKEQNVHR 149
EA+EQE I M K KK+ GEV + L+ + L+K+ V +
Sbjct: 241 EAIEQEARITSFMKKAKKKKNVVDDESEAVNASGEVETKET-LKLKKQINTLLKKHKVRQ 299
Query: 150 LDKTVRRAKEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKR 329
+ + V+ FK WG QVKVG+RLI +LM A+I PP Q + PEIRPA K R
Sbjct: 300 VREIVKAHDSFKSWGQEAQVKVGARLIQLLMETAYIQPPAEQFD-DGPPEIRPAFKQSSR 358
Query: 330 TITAKKKRFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRS 509
+T + K+ +R+ G + CDPL+ L+KSA+ + +PY+PML+ P WT Y +G + L S
Sbjct: 359 IVTIENKKLSRKYGCIECDPLIRKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPS 418
Query: 510 YLMRTHG 530
Y+MRTHG
Sbjct: 419 YIMRTHG 425
>tr|P93661|P93661_CHEAL DNA-directed RNA polymerase OS=Chenopodium
album PE=2 SV=1
Length = 988
Score = 144 bits (362), Expect = 4e-33
Identities = 77/180 (42%), Positives = 107/180 (59%), Gaps = 4/180 (2%)
Frame = +3
Query: 3 EAVEQETEIFRIMSKKGKK---RKQGEVAPSPADVALQMNVEKLMKEQNVHRLDKTVRRA 173
EAVEQE +I + + K KK E + A L V LMK+Q + ++ + VR
Sbjct: 267 EAVEQEAKIRKFLEKSKKKPATNNNDEDDSAKAQQRLAKKVTTLMKKQKISQVREIVRGQ 326
Query: 174 KEFKPWGSPLQVKVGSRLIDILMNVAFIHPPVSQSPTEDLPEIRPALKHEKRTITAK-KK 350
+ KPW QVKVG +LI +L A+I PP Q + P+IRPA H ++T+ + +K
Sbjct: 327 DDSKPWSQDNQVKVGCKLIQLLAETAYIQPPADQL-ADGPPDIRPAFIHTQKTVCKESQK 385
Query: 351 RFTRQIGVLACDPLVWSSLEKSAKFLELPYMPMLVEPVKWTSYKKGGYMVLRSYLMRTHG 530
R+ GV+ CDPLV LEK+A+ + +PYMPML+ P+ WT Y KG Y+ L SY+MRTHG
Sbjct: 386 GLRRRYGVIECDPLVRRGLEKTARHMVIPYMPMLIPPLNWTGYDKGAYLYLPSYIMRTHG 445
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