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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917398
Clone id YMU001_000100_C11
Library
Length 437
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000100_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCATAGTTTTCTTTCCTGATGTTGATAATAGATCTTGCAGCCTTTTAGTTGTGGTAGAAA
TGTCTAGTAACTGCTGAGGTTGATTGGATTGCCAGGCGATTTTGTTCCTAGACCCCCAGC
GGAAAGTTTCTGGCGAGTCAGGACGGTCATCATGCATGGTTGTCTTTACTGACGGTGATA
ATAGATCTTGAAGCCTTTTAATTGCGGTAGAGATGTTTAGTACATGCTGAGGCTGATTAG
ACTTCCAGGCGATCTTGATGCTAGACCTTGAGGGAAAAGTTGCTGATAAGTCATTTAGGT
GCCATCAAATCATATCTTCCCCTTAGTCCATAATTCTTGGGAGAATACAAGGCAACGAGC
TGATTTGTTGCTGATCAGTCATTAAGGTGCCAATAAACCATTTTTTCCTCACTCCAATTA
ATTCTTGGGACAATACA
■■Homology search results ■■ -
sp_hit_id Q5R4E0
Definition sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii
Align length 44
Score (bit) 31.2
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917398|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C11.
         (437 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit b...    31   2.0  
sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit b...    31   2.0  
sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit b...    31   2.0  
sp|Q3UHF7|ZEP2_MOUSE Transcription factor HIVEP2 OS=Mus musculus...    30   4.4  
sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogast...    30   4.4  
sp|A5WGY0|RECA_PSYWF Protein recA OS=Psychrobacter sp. (strain P...    30   4.4  
sp|P95469|RECA_PARDE Protein recA OS=Paracoccus denitrificans GN...    30   4.4  
sp|Q3BVY2|KATG_XANC5 Catalase-peroxidase OS=Xanthomonas campestr...    30   4.4  
sp|Q8PMX4|KATG_XANAC Catalase-peroxidase OS=Xanthomonas axonopod...    30   4.4  
sp|A8AKP9|Y2957_CITK8 UPF0255 protein CKO_02957 OS=Citrobacter k...    30   5.7  
sp|O94636|TRM11_SCHPO tRNA guanosine-2'-O-methyltransferase trm1...    30   5.7  
sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit bet...    30   5.7  
sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit b...    30   5.7  
sp|P74737|RECA_SYNY3 Protein recA OS=Synechocystis sp. (strain P...    29   7.5  
sp|A4WV48|RECA_RHOS5 Protein recA OS=Rhodobacter sphaeroides (st...    29   7.5  
sp|P32725|RECA_RHOS4 Protein recA OS=Rhodobacter sphaeroides (st...    29   7.5  
sp|A3PLJ2|RECA_RHOS1 Protein recA OS=Rhodobacter sphaeroides (st...    29   7.5  
sp|P42438|RECA_ACIAD Protein recA OS=Acinetobacter sp. (strain A...    29   7.5  
sp|P49293|PSY_CUCME Phytoene synthase, chloroplastic OS=Cucumis ...    29   9.8  

>sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta
           OS=Pongo abelii GN=MAT2B PE=2 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 277 FPSRSSIKIAWKSNQPQHVLNISTAIKRLQD--LLSPSVKTTMH 152
           F ++S+    W+   P HV +++T  ++L +  +L PS+K T H
Sbjct: 206 FSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFH 249


>sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta
           OS=Homo sapiens GN=MAT2B PE=1 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 277 FPSRSSIKIAWKSNQPQHVLNISTAIKRLQD--LLSPSVKTTMH 152
           F ++S+    W+   P HV +++T  ++L +  +L PS+K T H
Sbjct: 206 FSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFH 249


>sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta
           OS=Bos taurus GN=MAT2B PE=2 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 277 FPSRSSIKIAWKSNQPQHVLNISTAIKRLQD--LLSPSVKTTMH 152
           F ++S+    W+   P HV +++T  ++L +  +L PS+K T H
Sbjct: 206 FSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFH 249


>sp|Q3UHF7|ZEP2_MOUSE Transcription factor HIVEP2 OS=Mus musculus
            GN=Hivep2 PE=1 SV=1
          Length = 2430

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
 Frame = -2

Query: 232  PQHVLNISTAIKRLQDLLSPSVKTTMHDDRPDSP------------ETFRWGSRNKIAWQ 89
            PQH  +    + R  ++  P ++ T   D+P+              E F+W  R++    
Sbjct: 862  PQHSYHAQPRLVRQHNIQVPEIRVTEEPDKPEKEKEAPTKEPEKPVEEFQWPQRSETL-- 919

Query: 88   SNQPQQLLDISTTTKRLQDLLSTSGKKT 5
            S  P + L       RL DL  +SG+ +
Sbjct: 920  SQLPAEKLPPKKKRLRLADLEHSSGESS 947


>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster
            GN=spen PE=1 SV=2
          Length = 5560

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -2

Query: 244  KSNQPQHVLNISTAIKRLQDLLSPSVKTTMHDDRPDSPETFRWGSRNKIAWQSNQPQQLL 65
            +  Q QH L  S     +  L SP+ +     + P + +   +  RN+   Q   P+ + 
Sbjct: 3689 QQTQQQHALITSPQSSNISPLASPTTRVLSSSNSPTTSKVNSYQPRNQQVPQQPSPKSVA 3748

Query: 64   DISTT 50
            ++ TT
Sbjct: 3749 EVQTT 3753


>sp|A5WGY0|RECA_PSYWF Protein recA OS=Psychrobacter sp. (strain
           PRwf-1) GN=recA PE=3 SV=1
          Length = 349

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 93  QAILFLDPQRKVSGESGRSSCMVVFTDGDNRS*SLLIAVEMFSTC*G*LDFQAILMLDLE 272
           QA L     RK++G + RS+CMV+F +       ++      +T    L F A + LD+ 
Sbjct: 167 QARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIR 226

Query: 273 GKVADKS 293
              A KS
Sbjct: 227 RIGAVKS 233


>sp|P95469|RECA_PARDE Protein recA OS=Paracoccus denitrificans
           GN=recA PE=3 SV=1
          Length = 356

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 93  QAILFLDPQRKVSGESGRSSCMVVFTDGDNRS*SLLIAVEMFSTC*G*LDFQAILMLDLE 272
           QA L     RK++   GRS+CMV+F +       ++      +T    L F A + LD+ 
Sbjct: 179 QARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIR 238

Query: 273 --GKVADK 290
             G + D+
Sbjct: 239 RAGSIKDR 246


>sp|Q3BVY2|KATG_XANC5 Catalase-peroxidase OS=Xanthomonas campestris
           pv. vesicatoria (strain 85-10) GN=katG PE=3 SV=1
          Length = 748

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
 Frame = -2

Query: 115 GSRNKIA----WQSNQPQQLLDISTTTKRLQ---DLLSTSGKK 8
           G+R ++A    WQ+NQP+QL  +  T +R+Q   +   + GKK
Sbjct: 502 GARIRLAPQKDWQANQPEQLAKVLATLERIQADFNAAQSGGKK 544


>sp|Q8PMX4|KATG_XANAC Catalase-peroxidase OS=Xanthomonas axonopodis
           pv. citri GN=katG PE=3 SV=2
          Length = 748

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
 Frame = -2

Query: 115 GSRNKIA----WQSNQPQQLLDISTTTKRLQ---DLLSTSGKK 8
           G+R ++A    WQ+NQP+QL  +  T +R+Q   +   + GKK
Sbjct: 502 GARIRLAPQKEWQANQPEQLAKVLATLERIQADFNAAQSGGKK 544


>sp|A8AKP9|Y2957_CITK8 UPF0255 protein CKO_02957 OS=Citrobacter
           koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
           GN=CKO_02957 PE=3 SV=1
          Length = 414

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -2

Query: 211 STAIKRLQDLLSPSVKTTMHDDRPDSPETFRWGSRNKIAWQSNQPQQLLDI 59
           ST ++R      PSV++T+  D  + P  +R  +R    W+   P+++LD+
Sbjct: 21  STLVRRFNHGTQPSVQSTL--DGKNVPHWYRMINRLMWIWRGIDPREILDV 69
tr_hit_id A7N3A1
Definition tr|A7N3A1|A7N3A1_VIBHB Putative uncharacterized protein OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
Align length 72
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917398|Adiantum capillus-veneris mRNA, clone:
YMU001_000100_C11.
         (437 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7N3A1|A7N3A1_VIBHB Putative uncharacterized protein OS=Vibri...    36   0.84 
tr|Q2SSH8|Q2SSH8_MYCCT Membrane protein, putative OS=Mycoplasma ...    35   1.9  
tr|A9GE61|A9GE61_SORC5 ECF-family RNA polymerase sigma factor OS...    35   1.9  
tr|Q6D9K8|Q6D9K8_ERWCT Cfa-beta-ketoacylsynthase OS=Erwinia caro...    34   3.2  

>tr|A7N3A1|A7N3A1_VIBHB Putative uncharacterized protein OS=Vibrio
           harveyi (strain ATCC BAA-1116 / BB120) GN=VIBHAR_05027
           PE=4 SV=1
          Length = 336

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = -2

Query: 217 NISTAIKRLQDLLSPSVKTTMHDDRPDSPETFRWGSRNKIAWQSNQPQQLLDISTTTKRL 38
           N   A K L  L++  + TT+H+   D P+      RN +A + ++  +  ++ T  K  
Sbjct: 192 NTDGAYKNLDSLVNDLINTTIHEVHQDDPDLVVLIGRNLVAAEQHRLLESAEVPTEHKAA 251

Query: 37  QDLLSTSGKKTM 2
           Q L  T   KT+
Sbjct: 252 QSLAKTVAGKTV 263


>tr|Q2SSH8|Q2SSH8_MYCCT Membrane protein, putative OS=Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC 27343 / NCTC 10154) GN=MCAP_0299 PE=4 SV=1
          Length = 1646

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = -2

Query: 343 LPRIMD*GEDMI*WHLNDLSATFPSRSSIKIAWKSNQPQHVLNISTAIKRLQDLLSPSVK 164
           LP+I   G +   + LN    T+   S +K+ W+SN P  +L ++  IK       PS  
Sbjct: 608 LPKIDSDGNNTNEFELNSKVRTYIYHSDVKLKWQSNDPTDILLVNGEIK------EPSGN 661

Query: 163 TTMHDDRPDSPETFRWGSRNKIAW 92
            T  ++  + P   RW    +  W
Sbjct: 662 NTF-EETFNIPLANRWNDETQKEW 684


>tr|A9GE61|A9GE61_SORC5 ECF-family RNA polymerase sigma factor
           OS=Sorangium cellulosum (strain So ce56) GN=sce9274 PE=4
           SV=1
          Length = 361

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -2

Query: 256 KIAWKSNQPQ-HVLNISTAIKRLQDLLSPSVKTTMHDDRPDSPETFRWGSRNKIAWQ 89
           ++A  +NQ + HV     + +R +++L+PS    +HD+ P   E  RW  R  + W+
Sbjct: 56  RVAIAANQARDHV----RSARRRREVLTPSGDPELHDEHPTPEELLRWREREAVLWE 108


>tr|Q6D9K8|Q6D9K8_ERWCT Cfa-beta-ketoacylsynthase OS=Erwinia
           carotovora subsp. atroseptica GN=cfa3 PE=3 SV=1
          Length = 381

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
 Frame = -2

Query: 298 LNDLSATFPSRSS-------IKIAWKSNQPQHVLNISTAIKRLQDLLSP-------SVKT 161
           + DL +T   RS+       I + W+  + QHVL + T  K L+D   P       +V  
Sbjct: 37  ITDLESTLSLRSNLAAPIPDIPLEWEGARRQHVLTVKTLRKALEDASIPADDPDILAVLG 96

Query: 160 TMHDDRPDSPETF 122
           T +    DSP+TF
Sbjct: 97  TSYGHHLDSPDTF 109